Wall clock time and date at job start Tue Mar 31 2020 23:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46958 * 2 1 4 4 H 1.09004 * 109.47205 * 55.00474 * 3 2 1 5 5 C 1.53001 * 109.47453 * 295.00335 * 3 2 1 6 6 C 1.50702 * 109.47341 * 175.00325 * 3 2 1 7 7 O 1.21279 * 119.99664 * 0.02562 * 6 3 2 8 8 N 1.34774 * 120.00149 * 180.02562 * 6 3 2 9 9 C 1.46494 * 120.00036 * 179.97438 * 8 6 3 10 10 H 1.08999 * 112.85103 * 336.19957 * 9 8 6 11 11 C 1.53781 * 113.61337 * 107.50418 * 9 8 6 12 12 C 1.53776 * 87.08446 * 89.11767 * 11 9 8 13 13 H 1.09002 * 113.68937 * 270.87761 * 12 11 9 14 14 N 1.46891 * 113.61907 * 139.98186 * 12 11 9 15 15 C 1.46904 * 111.00545 * 107.50238 * 14 12 11 16 16 C 1.50692 * 109.47570 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99969 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00104 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99868 * 359.97438 * 18 16 15 20 20 C 1.52997 * 109.47289 * 269.99911 * 19 18 16 21 21 C 1.46498 * 120.00377 * 180.02562 * 18 16 15 22 22 C 1.50694 * 109.47360 * 270.00513 * 21 18 16 23 23 H 1.08009 * 119.99986 * 359.97438 * 22 21 18 24 24 C 1.37876 * 120.00318 * 179.97438 * 22 21 18 25 25 N 1.31523 * 119.99946 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00075 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46921 * 90.00009 * 26 24 22 28 28 H 1.48501 * 109.47040 * 210.00015 * 26 24 22 29 29 H 1.48495 * 109.46957 * 330.00132 * 26 24 22 30 30 C 1.53782 * 87.08116 * 25.43040 * 12 11 9 31 31 H 1.08999 * 109.47350 * 59.99770 * 1 2 3 32 32 H 1.09000 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46977 * 299.99087 * 1 2 3 34 34 H 1.09004 * 109.46977 * 240.00913 * 2 1 3 35 35 H 1.08999 * 109.47350 * 120.00230 * 2 1 3 36 36 H 1.09008 * 109.46972 * 59.99796 * 5 3 2 37 37 H 1.09000 * 109.47559 * 179.97438 * 5 3 2 38 38 H 1.08994 * 109.46946 * 300.00368 * 5 3 2 39 39 H 0.97005 * 120.00102 * 0.02562 * 8 6 3 40 40 H 1.09005 * 113.61332 * 334.56698 * 11 9 8 41 41 H 1.08996 * 113.61746 * 203.66518 * 11 9 8 42 42 H 1.00907 * 111.00360 * 343.55120 * 14 12 11 43 43 H 1.09005 * 109.46815 * 60.00027 * 15 14 12 44 44 H 1.09000 * 109.46728 * 300.00872 * 15 14 12 45 45 H 1.08998 * 109.46566 * 149.99645 * 19 18 16 46 46 H 1.08996 * 109.46660 * 30.00626 * 19 18 16 47 47 H 1.09002 * 109.47153 * 179.97438 * 20 19 18 48 48 H 1.09001 * 109.46832 * 60.00146 * 20 19 18 49 49 H 1.09004 * 109.47261 * 300.00128 * 20 19 18 50 50 H 1.09003 * 109.46949 * 30.00144 * 21 18 16 51 51 H 1.08997 * 109.47570 * 149.99964 * 21 18 16 52 52 H 0.96998 * 119.99865 * 180.02562 * 25 24 22 53 53 H 1.09008 * 113.60937 * 89.11568 * 30 12 11 54 54 H 1.08996 * 113.61874 * 220.01670 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5419 1.4444 0.1238 7 8 4.1450 0.3953 0.2036 8 7 4.2148 2.6119 0.1457 9 6 5.6747 2.6138 0.2666 10 1 6.0621 1.7074 0.7318 11 6 6.4000 2.9995 -1.0335 12 6 6.3058 4.4596 -0.5603 13 1 5.3925 4.9641 -0.8757 14 7 7.5157 5.2462 -0.8342 15 6 7.2853 6.2045 -1.9235 16 6 8.5458 6.9910 -2.1758 17 8 9.5385 6.7742 -1.5136 18 7 8.5703 7.9345 -3.1378 19 6 7.3715 8.1952 -3.9388 20 6 7.3802 7.2966 -5.1771 21 6 9.7958 8.6987 -3.3835 22 6 9.7978 9.9353 -2.5223 23 1 8.9688 10.1326 -1.8587 24 6 10.8578 10.8150 -2.5816 25 7 10.8593 11.8946 -1.8304 26 14 12.2919 10.4735 -3.7288 27 1 12.0257 11.0931 -5.0519 28 1 13.5340 11.0492 -3.1535 29 1 12.4560 9.0068 -3.8931 30 6 6.2410 3.9082 0.8738 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 0.5487 2.1253 -1.3968 37 1 1.9980 3.1545 -1.3071 38 1 2.0697 1.5876 -2.1491 39 1 3.7323 3.4511 0.0822 40 1 5.8210 2.7940 -1.9339 41 1 7.4217 2.6243 -1.0913 42 1 8.2989 4.6447 -1.0415 43 1 6.4814 6.8857 -1.6442 44 1 7.0065 5.6653 -2.8288 45 1 7.3616 9.2403 -4.2482 46 1 6.4836 7.9843 -3.3429 47 1 6.4881 7.4903 -5.7727 48 1 7.3901 6.2516 -4.8675 49 1 8.2682 7.5076 -5.7729 50 1 10.6622 8.0842 -3.1388 51 1 9.8398 8.9871 -4.4337 52 1 11.6048 12.5136 -1.8723 53 1 7.2194 3.7815 1.3374 54 1 5.5337 4.4364 1.5132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490866088.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:03 Heat of formation + Delta-G solvation = -87.256391 kcal Electronic energy + Delta-G solvation = -29647.659452 eV Core-core repulsion = 25618.632135 eV Total energy + Delta-G solvation = -4029.027318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46495 -40.74545 -39.65226 -37.00563 -36.35294 -35.65542 -34.82267 -33.54100 -31.84924 -30.51406 -29.89743 -27.57885 -26.65539 -26.23982 -24.64654 -24.28097 -23.50613 -22.88851 -20.78917 -20.64752 -19.74704 -19.09751 -18.26763 -17.91192 -17.44532 -17.08719 -16.64928 -16.44556 -16.08155 -16.03322 -15.81487 -15.35958 -15.22796 -14.70060 -14.67668 -14.48331 -14.38468 -14.21075 -13.80387 -13.68474 -13.61781 -13.40302 -13.38145 -13.21489 -13.02443 -12.95593 -12.69254 -12.57718 -12.52586 -12.46733 -12.34830 -12.05033 -11.89017 -11.75135 -11.73041 -11.69830 -11.58176 -11.38129 -10.81871 -10.74999 -10.57328 -10.06887 -9.42008 -9.24782 -8.33681 -6.38314 1.30725 1.35821 1.46280 1.62277 1.84003 2.15339 2.26722 2.31209 3.00288 3.20503 3.55233 3.64161 3.69511 3.75427 3.87423 3.95787 4.02064 4.04558 4.12549 4.33607 4.40742 4.44905 4.47332 4.53332 4.57122 4.63198 4.64574 4.74761 4.78192 4.80005 4.85931 4.92287 4.96509 4.99264 5.01155 5.02675 5.02972 5.05611 5.12497 5.14210 5.23423 5.39081 5.39499 5.48148 5.50708 5.57522 5.67562 6.06307 6.25955 6.33838 6.56332 6.63188 6.77050 7.22837 7.26783 7.48153 8.83314 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.001839 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.639727 B =15220.980764 C =15707.896224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.105 4.105 4 H 0.120 0.880 5 C -0.143 4.143 6 C 0.514 3.486 7 O -0.588 6.588 8 N -0.699 5.699 9 C 0.122 3.878 10 H 0.083 0.917 11 C -0.172 4.172 12 C 0.074 3.926 13 H 0.119 0.881 14 N -0.681 5.681 15 C 0.059 3.941 16 C 0.493 3.507 17 O -0.586 6.586 18 N -0.602 5.602 19 C 0.098 3.902 20 C -0.160 4.160 21 C 0.227 3.773 22 C -0.535 4.535 23 H 0.029 0.971 24 C 0.010 3.990 25 N -0.945 5.945 26 Si 0.948 3.052 27 H -0.251 1.251 28 H -0.282 1.282 29 H -0.258 1.258 30 C -0.128 4.128 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.416 0.584 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.347 0.653 43 H 0.114 0.886 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.060 0.940 49 H 0.044 0.956 50 H 0.016 0.984 51 H 0.045 0.955 52 H 0.268 0.732 53 H 0.089 0.911 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.190 -20.681 -2.638 31.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.126 4.126 4 H 0.137 0.863 5 C -0.201 4.201 6 C 0.302 3.698 7 O -0.468 6.468 8 N -0.350 5.350 9 C 0.016 3.984 10 H 0.101 0.899 11 C -0.213 4.213 12 C -0.036 4.036 13 H 0.137 0.863 14 N -0.313 5.313 15 C -0.073 4.073 16 C 0.282 3.718 17 O -0.466 6.466 18 N -0.334 5.334 19 C -0.024 4.024 20 C -0.218 4.218 21 C 0.104 3.896 22 C -0.574 4.574 23 H 0.047 0.953 24 C -0.188 4.188 25 N -0.585 5.585 26 Si 0.770 3.230 27 H -0.175 1.175 28 H -0.208 1.208 29 H -0.182 1.182 30 C -0.167 4.167 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.253 0.747 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.167 0.833 43 H 0.132 0.868 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.063 0.937 52 H 0.077 0.923 53 H 0.107 0.893 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.275 -20.881 -1.726 31.316 hybrid contribution 1.166 0.191 -0.706 1.376 sum -22.110 -20.689 -2.431 30.378 Atomic orbital electron populations 1.21816 0.93593 1.02323 1.02888 1.21324 0.96902 0.94418 1.01815 1.21408 0.89181 0.99512 1.02523 0.86255 1.21851 1.03528 1.00543 0.94135 1.21365 0.91296 0.83024 0.74129 1.90687 1.71533 1.33197 1.51347 1.45629 1.06312 1.09189 1.73888 1.21580 0.80542 0.99066 0.97245 0.89907 1.24103 1.01381 0.97459 0.98334 1.23207 0.93113 0.90682 0.96550 0.86345 1.60036 1.07054 1.20972 1.43191 1.21851 0.94263 0.95737 0.95422 1.21382 0.90857 0.80603 0.78971 1.90641 1.38411 1.68932 1.48592 1.48070 1.13868 1.36104 1.35342 1.21776 0.86601 1.00869 0.93173 1.22156 1.03034 0.99527 0.97076 1.19239 0.84565 0.89906 0.95893 1.21585 1.05762 1.06146 1.23888 0.95304 1.25855 1.01072 0.94380 0.97462 1.70056 1.33289 1.13414 1.41770 0.85715 0.78263 0.79472 0.79524 1.17471 1.20786 1.18172 1.23408 1.02023 0.94303 0.97013 0.91229 0.92537 0.91752 0.92948 0.93082 0.89459 0.90594 0.93214 0.74666 0.90719 0.89520 0.83285 0.86790 0.89475 0.91111 0.88349 0.88705 0.92078 0.93675 0.96563 0.93716 0.92318 0.89284 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 71.98 0.70 -0.42 16 2 C -0.11 -1.34 4.75 30.59 0.15 -1.19 16 3 C -0.11 -1.04 2.72 -11.54 -0.03 -1.07 16 4 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 5 C -0.14 -0.86 8.84 71.98 0.64 -0.22 16 6 C 0.51 8.69 7.15 87.66 0.63 9.32 16 7 O -0.59 -15.73 15.52 -3.03 -0.05 -15.78 16 8 N -0.70 -8.79 5.15 -440.05 -2.27 -11.06 16 9 C 0.12 1.98 4.32 45.52 0.20 2.18 16 10 H 0.08 1.74 7.46 -2.39 -0.02 1.72 16 11 C -0.17 -2.74 7.49 31.12 0.23 -2.51 16 12 C 0.07 1.21 4.06 45.44 0.18 1.39 16 13 H 0.12 1.38 7.87 -2.39 -0.02 1.37 16 14 N -0.68 -16.98 6.24 -492.88 -3.08 -20.06 16 15 C 0.06 1.48 4.56 85.55 0.39 1.87 16 16 C 0.49 19.34 7.71 87.66 0.68 20.01 16 17 O -0.59 -29.37 15.78 -3.04 -0.05 -29.41 16 18 N -0.60 -23.67 2.46 -826.18 -2.03 -25.70 16 19 C 0.10 2.67 5.93 86.38 0.51 3.18 16 20 C -0.16 -3.22 10.24 71.98 0.74 -2.48 16 21 C 0.23 11.06 4.23 85.63 0.36 11.42 16 22 C -0.54 -31.73 9.94 25.60 0.25 -31.47 16 23 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 24 C 0.01 0.61 5.47 84.65 0.46 1.07 16 25 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 26 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 27 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 H -0.26 -11.82 6.54 99.48 0.65 -11.17 16 30 C -0.13 -2.07 7.63 31.12 0.24 -1.83 16 31 H 0.07 0.37 6.56 -2.39 -0.02 0.35 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.05 0.83 7.96 -2.39 -0.02 0.81 16 36 H 0.09 0.29 6.57 -2.38 -0.02 0.27 16 37 H 0.08 0.23 7.57 -2.39 -0.02 0.22 16 38 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.42 2.71 8.12 -92.70 -0.75 1.96 16 40 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.09 1.52 7.82 -2.39 -0.02 1.50 16 42 H 0.35 9.38 7.89 -89.69 -0.71 8.67 16 43 H 0.11 2.47 7.39 -2.38 -0.02 2.45 16 44 H 0.09 1.62 7.19 -2.39 -0.02 1.60 16 45 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 46 H 0.10 2.04 6.44 -2.39 -0.02 2.02 16 47 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 1.11 7.22 -2.39 -0.02 1.09 16 49 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.02 0.87 6.48 -2.39 -0.02 0.86 16 51 H 0.04 1.99 7.50 -2.39 -0.02 1.97 16 52 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 53 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 54 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -85.18 427.96 0.41 -84.77 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.63 Total: 21.12 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 6.32 Total: 9.24 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -7.08 Total: -116.63 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.09 Total: -45.19 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -85.18 0.41 -84.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490866088.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.486 kcal (2) G-P(sol) polarization free energy of solvation -85.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds