Wall clock time and date at job start Tue Mar 31 2020 23:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.09007 * 109.46832 * 305.61724 * 3 2 1 5 5 C 1.52998 * 109.47360 * 65.61956 * 3 2 1 6 6 N 1.46503 * 109.46907 * 174.99857 * 5 3 2 7 7 C 1.34773 * 119.99581 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00254 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99887 * 180.02562 * 7 6 5 10 10 H 1.09005 * 110.42930 * 300.69812 * 9 7 6 11 11 C 1.54885 * 110.48869 * 63.24122 * 9 7 6 12 12 C 1.55023 * 102.68534 * 156.51862 * 11 9 7 13 13 C 1.54267 * 104.28049 * 322.23617 * 12 11 9 14 14 C 1.53004 * 110.02978 * 264.23083 * 13 12 11 15 15 C 1.53005 * 110.07371 * 142.82527 * 13 12 11 16 16 C 1.53871 * 106.59862 * 23.51645 * 13 12 11 17 17 N 1.46901 * 109.47115 * 185.62458 * 3 2 1 18 18 C 1.46895 * 111.00270 * 86.25750 * 17 3 2 19 19 C 1.50702 * 109.46964 * 174.55744 * 18 17 3 20 20 O 1.21291 * 120.00233 * 0.02562 * 19 18 17 21 21 N 1.34785 * 119.99732 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99538 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00640 * 0.02562 * 22 21 19 24 24 C 1.38958 * 119.99833 * 179.73011 * 22 21 19 25 25 N 1.31417 * 119.99730 * 0.27110 * 24 22 21 26 26 Si 1.86798 * 120.00070 * 180.27633 * 24 22 21 27 27 H 1.48500 * 109.47217 * 60.00016 * 26 24 22 28 28 H 1.48501 * 109.46755 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46978 * 299.99608 * 26 24 22 30 30 H 1.08997 * 109.47434 * 294.38772 * 1 2 3 31 31 H 1.09007 * 109.47049 * 54.38275 * 1 2 3 32 32 H 1.08995 * 109.47326 * 174.37898 * 1 2 3 33 33 H 1.08995 * 109.47319 * 239.99721 * 2 1 3 34 34 H 1.09001 * 109.46594 * 119.99620 * 2 1 3 35 35 H 1.08996 * 109.47194 * 294.99784 * 5 3 2 36 36 H 1.08997 * 109.46622 * 55.00071 * 5 3 2 37 37 H 0.96996 * 120.00274 * 0.02562 * 6 5 3 38 38 H 1.09004 * 110.75370 * 274.93769 * 11 9 7 39 39 H 1.08997 * 110.75550 * 38.30470 * 11 9 7 40 40 H 1.08994 * 110.52512 * 203.48801 * 12 11 9 41 41 H 1.09008 * 110.47854 * 80.95883 * 12 11 9 42 42 H 1.08996 * 109.46811 * 177.16469 * 14 13 12 43 43 H 1.09001 * 109.46921 * 297.16666 * 14 13 12 44 44 H 1.08999 * 109.46777 * 57.16696 * 14 13 12 45 45 H 1.08998 * 109.46670 * 302.80370 * 15 13 12 46 46 H 1.08997 * 109.47098 * 62.80653 * 15 13 12 47 47 H 1.08992 * 109.46919 * 182.80673 * 15 13 12 48 48 H 1.09001 * 110.03023 * 240.71848 * 16 13 12 49 49 H 1.08995 * 110.07303 * 119.30736 * 16 13 12 50 50 H 1.00903 * 110.99488 * 322.30141 * 17 3 2 51 51 H 1.08994 * 109.47278 * 54.56000 * 18 17 3 52 52 H 1.09000 * 109.47363 * 294.55852 * 18 17 3 53 53 H 0.96998 * 119.99771 * 0.02562 * 21 19 18 54 54 H 0.96999 * 119.99599 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8355 5 6 1.6486 2.1219 1.3138 6 7 2.2381 3.4621 1.3650 7 6 2.0260 4.2509 2.4370 8 8 1.3477 3.8511 3.3595 9 6 2.6319 5.6299 2.4895 10 1 3.7181 5.5712 2.4189 11 6 2.0619 6.5160 1.3543 12 6 2.2785 7.9505 1.9008 13 6 1.9888 7.8299 3.4112 14 6 0.5404 8.2294 3.7006 15 6 2.9464 8.7232 4.2025 16 6 2.2135 6.3545 3.7855 17 7 3.5027 1.4448 -0.1357 18 6 3.9004 1.4008 -1.5492 19 6 5.3974 1.5390 -1.6543 20 8 6.0671 1.6616 -0.6506 21 7 5.9920 1.5254 -2.8638 22 6 7.3539 1.6506 -2.9594 23 1 7.9503 1.7597 -2.0657 24 6 7.9676 1.6309 -4.2060 25 7 7.2419 1.4977 -5.2935 26 14 9.8239 1.7938 -4.3359 27 1 10.4714 0.6784 -3.5996 28 1 10.2264 1.7430 -5.7644 29 1 10.2496 3.0888 -3.7469 30 1 -0.3634 0.4243 0.9359 31 1 -0.3633 0.5985 -0.8355 32 1 -0.3634 -1.0227 -0.1007 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 0.5631 2.1999 1.3732 36 1 2.0169 1.5307 2.1522 37 1 2.7803 3.7820 0.6271 38 1 2.6187 6.3645 0.4295 39 1 1.0008 6.3168 1.2045 40 1 1.5823 8.6467 1.4332 41 1 3.3069 8.2709 1.7339 42 1 0.3310 8.0929 4.7615 43 1 0.3915 9.2753 3.4323 44 1 -0.1329 7.6043 3.1140 45 1 3.9752 8.4474 3.9710 46 1 2.7795 9.7654 3.9305 47 1 2.7666 8.5929 5.2696 48 1 1.2907 5.9229 4.1733 49 1 3.0050 6.2739 4.5305 50 1 3.9148 0.6815 0.3798 51 1 3.4213 2.2189 -2.0870 52 1 3.5918 0.4501 -1.9841 53 1 5.4564 1.4270 -3.6665 54 1 7.6704 1.4836 -6.1637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495055986.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:23 Heat of formation + Delta-G solvation = -130.737488 kcal Electronic energy + Delta-G solvation = -30082.841441 eV Core-core repulsion = 26051.928641 eV Total energy + Delta-G solvation = -4030.912799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24873 -40.20804 -39.27509 -38.31006 -35.95661 -35.05223 -33.67243 -33.22127 -33.13361 -29.98258 -29.44043 -28.13268 -27.76771 -26.14148 -25.23767 -24.29428 -22.77776 -21.81022 -21.07282 -20.63185 -19.88459 -19.55848 -18.24272 -17.77639 -17.26428 -16.72627 -16.57853 -16.33948 -16.20175 -15.78061 -15.64923 -15.35701 -15.01183 -14.91942 -14.62416 -14.42249 -14.24420 -14.12415 -13.88426 -13.72590 -13.56730 -13.43185 -13.28834 -12.97895 -12.91182 -12.61395 -12.58120 -12.50641 -12.40790 -12.35856 -12.13406 -12.11734 -12.00660 -11.62540 -11.58824 -11.47394 -11.41862 -11.40309 -11.30981 -10.72552 -10.31656 -9.98529 -9.94984 -9.31148 -8.44749 -5.92780 1.40553 1.42743 1.52953 1.69905 2.09656 2.29326 2.33583 2.89194 3.23024 3.52622 3.53937 3.59663 3.78591 3.81872 3.96269 4.15767 4.21305 4.31300 4.33675 4.35245 4.38327 4.46003 4.51287 4.54664 4.57555 4.61734 4.64629 4.68882 4.76617 4.84106 4.85167 4.93506 4.94776 4.98378 5.05845 5.13791 5.14441 5.16109 5.21050 5.21675 5.34577 5.37688 5.41604 5.42932 5.47105 5.58203 5.60620 5.89997 6.10916 6.35415 6.63174 6.66187 7.15713 7.32256 7.60352 8.16096 8.72296 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009194 B = 0.002568 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.613150 B =10900.746741 C =13262.038007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.098 0.902 5 C 0.135 3.865 6 N -0.706 5.706 7 C 0.515 3.485 8 O -0.590 6.590 9 C -0.114 4.114 10 H 0.103 0.897 11 C -0.108 4.108 12 C -0.111 4.111 13 C -0.070 4.070 14 C -0.135 4.135 15 C -0.138 4.138 16 C -0.100 4.100 17 N -0.673 5.673 18 C 0.067 3.933 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.412 0.588 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.345 0.655 51 H 0.109 0.891 52 H 0.067 0.933 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.173 8.920 9.765 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.027 4.027 4 H 0.117 0.883 5 C 0.011 3.989 6 N -0.356 5.356 7 C 0.302 3.698 8 O -0.471 6.471 9 C -0.136 4.136 10 H 0.121 0.879 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.070 4.070 14 C -0.192 4.192 15 C -0.195 4.195 16 C -0.138 4.138 17 N -0.304 5.304 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.248 0.752 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.164 0.836 51 H 0.127 0.873 52 H 0.085 0.915 53 H 0.230 0.770 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.088 9.383 10.900 21.580 hybrid contribution 0.925 -1.208 -0.989 1.815 sum -15.163 8.175 9.911 19.874 Atomic orbital electron populations 1.21746 0.94029 1.02443 1.02326 1.22165 0.97913 0.96013 1.02630 1.21926 0.86963 0.96210 0.97612 0.88347 1.21356 0.97661 0.82721 0.97172 1.45856 1.52697 1.15744 1.21281 1.20958 0.79786 0.87682 0.81344 1.90627 1.42045 1.76135 1.38302 1.22188 1.01586 0.90808 0.98968 0.87915 1.22472 1.00955 0.94532 0.96586 1.22510 1.02470 0.95951 0.93902 1.21190 0.96255 0.93788 0.95726 1.21879 0.94672 1.01432 1.01260 1.21904 0.98536 0.99453 0.99600 1.22182 1.01793 0.94398 0.95470 1.60068 1.08032 1.52755 1.09518 1.21566 0.91029 1.02904 0.91077 1.20924 0.91158 0.82153 0.83084 1.90508 1.67112 1.56059 1.37095 1.41930 1.07319 1.64574 1.07388 1.19591 0.83687 1.49024 0.93812 0.90449 1.25979 1.04521 0.96496 0.94188 1.69660 1.37847 1.50142 0.98479 0.85048 0.77279 0.78904 0.77488 1.19900 1.19606 1.19690 0.92451 0.91820 0.92020 0.91334 0.91716 0.90548 0.93341 0.75173 0.89939 0.91412 0.90185 0.90699 0.92928 0.91503 0.93332 0.92644 0.91672 0.92742 0.91759 0.91850 0.83622 0.87282 0.91546 0.76998 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.54 71.98 0.69 -1.45 16 2 C -0.15 -2.58 5.38 30.60 0.16 -2.41 16 3 C 0.08 1.66 2.21 44.92 0.10 1.76 16 4 H 0.10 1.74 7.69 -2.38 -0.02 1.73 16 5 C 0.14 3.07 5.02 86.38 0.43 3.50 16 6 N -0.71 -17.10 5.35 -463.06 -2.48 -19.57 16 7 C 0.51 13.90 7.14 87.66 0.63 14.53 16 8 O -0.59 -19.95 15.44 -3.03 -0.05 -20.00 16 9 C -0.11 -2.48 3.25 -10.47 -0.03 -2.51 16 10 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 11 C -0.11 -1.86 6.31 31.93 0.20 -1.66 16 12 C -0.11 -1.66 5.90 31.72 0.19 -1.47 16 13 C -0.07 -1.13 0.94 -51.46 -0.05 -1.18 16 14 C -0.14 -2.04 8.14 71.98 0.59 -1.46 16 15 C -0.14 -1.96 8.16 71.98 0.59 -1.37 16 16 C -0.10 -2.13 5.48 31.32 0.17 -1.96 16 17 N -0.67 -18.40 5.23 -495.58 -2.59 -20.99 16 18 C 0.07 2.00 5.99 85.56 0.51 2.51 16 19 C 0.44 19.60 7.83 87.66 0.69 20.29 16 20 O -0.62 -32.94 15.90 -3.06 -0.05 -32.99 16 21 N -0.57 -28.20 5.29 -306.97 -1.62 -29.82 16 22 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 23 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.58 13.05 21.67 0.28 -48.30 16 26 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H 0.06 0.84 6.98 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 1.22 7.52 -2.39 -0.02 1.21 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.63 6.96 -2.39 -0.02 1.61 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.41 9.62 8.14 -92.71 -0.75 8.87 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.20 8.05 -2.39 -0.02 1.19 16 40 H 0.08 1.03 7.84 -2.39 -0.02 1.01 16 41 H 0.07 1.08 7.84 -2.38 -0.02 1.06 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 1.63 6.40 -2.39 -0.02 1.61 16 49 H 0.06 1.35 7.67 -2.39 -0.02 1.33 16 50 H 0.34 10.38 8.36 -89.69 -0.75 9.63 16 51 H 0.11 2.82 7.92 -2.39 -0.02 2.80 16 52 H 0.07 1.76 7.56 -2.39 -0.02 1.74 16 53 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 54 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -68.19 427.60 0.33 -67.86 By element: Atomic # 1 Polarization: 51.49 SS G_CDS: -1.34 Total: 50.15 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.14 Total: 9.43 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.41 Total: -118.68 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.10 Total: -52.99 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.19 0.33 -67.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495055986.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.876 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds