Wall clock time and date at job start Tue Mar 31 2020 23:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47412 * 2 1 4 4 H 1.08998 * 109.47203 * 54.37997 * 3 2 1 5 5 N 1.46505 * 109.46637 * 294.38255 * 3 2 1 6 6 C 1.34768 * 120.00072 * 85.00235 * 5 3 2 7 7 C 1.50696 * 120.00258 * 179.97438 * 6 5 3 8 8 O 1.21287 * 120.00310 * 359.97438 * 6 5 3 9 9 C 1.50696 * 109.47283 * 174.38243 * 3 2 1 10 10 O 1.21287 * 120.00266 * 96.61295 * 9 3 2 11 11 N 1.34780 * 120.00220 * 276.61128 * 9 3 2 12 12 C 1.46920 * 120.62794 * 4.83501 * 11 9 3 13 13 C 1.52761 * 109.00791 * 233.58447 * 12 11 9 14 14 C 1.53044 * 109.38297 * 305.58622 * 13 12 11 15 15 C 1.52995 * 109.45043 * 181.25219 * 14 13 12 16 16 C 1.53008 * 109.46949 * 64.94084 * 15 14 13 17 17 N 1.46501 * 109.47168 * 180.02562 * 16 15 14 18 18 C 1.46503 * 119.99573 * 270.00090 * 17 16 15 19 19 C 1.36938 * 120.00017 * 89.99626 * 17 16 15 20 20 H 1.07996 * 119.99678 * 23.96402 * 19 17 16 21 21 C 1.38815 * 119.99896 * 203.96701 * 19 17 16 22 22 N 1.31622 * 119.99970 * 10.21228 * 21 19 17 23 23 Si 1.86793 * 119.99748 * 190.21626 * 21 19 17 24 24 H 1.48506 * 109.47422 * 59.99953 * 23 21 19 25 25 H 1.48505 * 109.46927 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47458 * 299.99708 * 23 21 19 27 27 C 1.53042 * 109.53399 * 61.23671 * 14 13 12 28 28 C 1.46921 * 120.63151 * 185.11095 * 11 9 3 29 29 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46889 * 300.00420 * 1 2 3 31 31 H 1.08998 * 109.47107 * 59.99601 * 1 2 3 32 32 H 1.09004 * 109.47667 * 120.00023 * 2 1 3 33 33 H 1.09008 * 109.47268 * 239.99932 * 2 1 3 34 34 H 0.97001 * 119.99786 * 264.98892 * 5 3 2 35 35 H 1.09005 * 109.47161 * 60.00150 * 7 6 5 36 36 H 1.09003 * 109.47687 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47574 * 300.00433 * 7 6 5 38 38 H 1.09005 * 109.59069 * 353.41593 * 12 11 9 39 39 H 1.09000 * 109.58928 * 113.84277 * 12 11 9 40 40 H 1.09003 * 109.56809 * 185.55244 * 13 12 11 41 41 H 1.09002 * 109.36050 * 65.50100 * 13 12 11 42 42 H 1.09003 * 109.45700 * 301.22029 * 14 13 12 43 43 H 1.08995 * 109.47267 * 184.93467 * 15 14 13 44 44 H 1.08992 * 109.47175 * 304.94387 * 15 14 13 45 45 H 1.09003 * 109.46916 * 299.99975 * 16 15 14 46 46 H 1.09003 * 109.47023 * 59.99682 * 16 15 14 47 47 H 1.08998 * 109.46770 * 95.08291 * 18 17 16 48 48 H 1.08998 * 109.46458 * 215.08064 * 18 17 16 49 49 H 1.08995 * 109.47034 * 335.07843 * 18 17 16 50 50 H 0.96997 * 119.99800 * 179.97438 * 22 21 19 51 51 H 1.09007 * 109.49258 * 178.68020 * 27 14 13 52 52 H 1.09004 * 109.52334 * 58.60758 * 27 14 13 53 53 H 1.09000 * 109.58870 * 246.15549 * 28 11 9 54 54 H 1.08998 * 109.58640 * 6.44101 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9846 0.8354 5 7 1.6652 2.0929 -1.2581 6 6 0.4492 2.6594 -1.3876 7 6 0.0638 3.3289 -2.6815 8 8 -0.3350 2.6304 -0.4629 9 6 3.5405 1.4447 0.1391 10 8 4.2409 1.5325 -0.8472 11 7 4.1044 1.3493 1.3595 12 6 3.2744 1.1364 2.5530 13 6 3.5974 2.2173 3.5830 14 6 5.1031 2.2239 3.8571 15 6 5.4242 3.2848 4.9116 16 6 4.7710 2.8977 6.2400 17 7 5.0781 3.9139 7.2497 18 6 6.2767 3.7811 8.0815 19 6 4.2447 4.9878 7.4157 20 1 3.2089 4.9185 7.1181 21 6 4.7315 6.1653 7.9664 22 7 6.0262 6.3235 8.1428 23 14 3.5490 7.5254 8.4573 24 1 2.6039 7.0138 9.4823 25 1 4.3142 8.6685 9.0170 26 1 2.7887 7.9752 7.2636 27 6 5.8572 2.5449 2.5646 28 6 5.5602 1.4621 1.5225 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.2923 2.1160 -1.9978 35 1 0.1033 2.6019 -3.4927 36 1 -0.9482 3.7252 -2.5983 37 1 0.7574 4.1436 -2.8898 38 1 2.2206 1.1964 2.2807 39 1 3.4890 0.1555 2.9771 40 1 3.0600 2.0116 4.5087 41 1 3.2941 3.1893 3.1940 42 1 5.4099 1.2439 4.2227 43 1 6.5042 3.3508 5.0435 44 1 5.0384 4.2503 4.5849 45 1 3.6910 2.8316 6.1082 46 1 5.1569 1.9320 6.5668 47 1 7.0922 4.3517 7.6372 48 1 6.0689 4.1624 9.0813 49 1 6.5604 2.7307 8.1450 50 1 6.3663 7.1465 8.5273 51 1 6.9282 2.5725 2.7657 52 1 5.5332 3.5139 2.1850 53 1 5.9651 0.5084 1.8609 54 1 6.0144 1.7346 0.5699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496509126.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:51 Heat of formation + Delta-G solvation = -86.203299 kcal Electronic energy + Delta-G solvation = -30875.719389 eV Core-core repulsion = 26846.737737 eV Total energy + Delta-G solvation = -4028.981652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.86963 -40.49837 -39.08354 -37.49735 -36.48643 -35.23461 -33.69931 -33.09918 -32.18464 -30.65629 -30.24865 -28.20834 -27.87773 -26.29130 -24.32965 -24.07118 -22.98906 -22.10431 -21.55953 -21.17279 -20.19479 -18.73916 -18.65326 -17.89563 -17.25293 -16.91824 -16.82565 -16.35040 -16.15644 -15.76071 -15.50571 -15.28266 -15.14570 -14.97503 -14.81942 -14.61190 -14.35608 -14.13227 -14.01514 -13.71927 -13.55098 -13.35888 -13.10496 -13.04518 -12.94275 -12.86571 -12.76320 -12.61052 -12.50386 -12.46942 -12.20205 -12.08925 -12.03852 -11.90144 -11.72766 -11.57259 -11.32363 -11.15279 -10.95366 -10.85655 -10.62362 -10.16164 -9.73393 -8.72882 -7.81494 -5.30187 1.31542 1.45022 1.46789 1.53213 1.62422 1.74766 2.34187 2.51216 3.22399 3.31751 3.66868 3.73232 3.83137 3.88703 3.90805 3.98609 4.01469 4.11478 4.29587 4.34365 4.40888 4.46392 4.49473 4.54126 4.58789 4.64416 4.71948 4.78882 4.80168 4.81980 4.87477 4.90955 4.97922 4.98640 5.03969 5.08710 5.10835 5.11097 5.21428 5.28151 5.33230 5.35326 5.42035 5.45293 5.56481 5.60821 5.67836 5.76614 6.25141 6.36393 6.48901 6.92626 7.17847 7.20167 7.91703 8.34613 9.21708 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.002528 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.108801 B =11073.896108 C =12209.935352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.126 3.874 4 H 0.103 0.897 5 N -0.713 5.713 6 C 0.507 3.493 7 C -0.168 4.168 8 O -0.579 6.579 9 C 0.514 3.486 10 O -0.571 6.571 11 N -0.601 5.601 12 C 0.104 3.896 13 C -0.129 4.129 14 C -0.073 4.073 15 C -0.116 4.116 16 C 0.149 3.851 17 N -0.624 5.624 18 C 0.177 3.823 19 C -0.258 4.258 20 H 0.069 0.931 21 C -0.056 4.056 22 N -0.941 5.941 23 Si 0.965 3.035 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.278 1.278 27 C -0.123 4.123 28 C 0.117 3.883 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.037 0.963 44 H 0.025 0.975 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.001 0.999 48 H 0.012 0.988 49 H 0.032 0.968 50 H 0.246 0.754 51 H 0.081 0.919 52 H 0.043 0.957 53 H 0.092 0.908 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -15.812 -21.166 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.018 3.982 4 H 0.120 0.880 5 N -0.367 5.367 6 C 0.296 3.704 7 C -0.227 4.227 8 O -0.459 6.459 9 C 0.302 3.698 10 O -0.451 6.451 11 N -0.333 5.333 12 C -0.018 4.018 13 C -0.168 4.168 14 C -0.092 4.092 15 C -0.157 4.157 16 C 0.024 3.976 17 N -0.347 5.347 18 C 0.032 3.968 19 C -0.388 4.388 20 H 0.087 0.913 21 C -0.251 4.251 22 N -0.588 5.588 23 Si 0.793 3.207 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.204 1.204 27 C -0.162 4.162 28 C -0.005 4.005 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.020 0.980 48 H 0.031 0.969 49 H 0.050 0.950 50 H 0.055 0.945 51 H 0.099 0.901 52 H 0.062 0.938 53 H 0.110 0.890 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.736 -15.665 -20.931 27.264 hybrid contribution 0.215 1.581 0.302 1.624 sum -7.521 -14.083 -20.629 26.085 Atomic orbital electron populations 1.21727 0.94098 1.01559 1.02100 1.21867 0.97313 0.92719 1.04095 1.20923 0.90487 0.97051 0.89775 0.87972 1.45897 1.17268 1.57649 1.15908 1.21483 0.80534 0.77197 0.91162 1.21938 1.04667 1.02564 0.93493 1.90734 1.51517 1.60272 1.43334 1.20769 0.90539 0.75478 0.83011 1.90656 1.64618 1.51850 1.37941 1.48180 1.08358 1.70145 1.06602 1.22005 0.95411 1.00067 0.84292 1.21916 0.96497 0.98679 0.99665 1.21059 0.94971 0.99415 0.93785 1.22018 0.99457 0.97668 0.96516 1.21093 0.98232 0.90875 0.87423 1.44260 1.26729 1.24735 1.39022 1.20526 0.88331 0.94603 0.93316 1.19487 0.91635 0.90909 1.36805 0.91300 1.25811 0.97063 0.99500 1.02723 1.70218 1.12351 1.26393 1.49856 0.85372 0.78231 0.78789 0.78260 1.20258 1.22139 1.20369 1.21914 1.01180 0.98040 0.95046 1.21647 0.79360 0.99787 0.99672 0.91529 0.93135 0.93567 0.88953 0.90733 0.74728 0.86977 0.88877 0.87820 0.88558 0.87948 0.89340 0.93650 0.89084 0.94387 0.95622 0.93057 0.92365 0.98043 0.96895 0.95002 0.94453 0.90085 0.93833 0.89027 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.53 71.98 0.61 -1.65 16 2 C -0.12 -1.79 5.33 30.59 0.16 -1.63 16 3 C 0.13 2.35 1.79 44.24 0.08 2.43 16 4 H 0.10 2.15 6.01 -2.39 -0.01 2.13 16 5 N -0.71 -12.39 5.01 -446.10 -2.23 -14.62 16 6 C 0.51 9.37 6.54 87.66 0.57 9.95 16 7 C -0.17 -1.66 10.32 71.23 0.74 -0.93 16 8 O -0.58 -15.18 14.23 -3.05 -0.04 -15.22 16 9 C 0.51 11.08 6.91 87.66 0.61 11.69 16 10 O -0.57 -15.21 15.41 -3.05 -0.05 -15.26 16 11 N -0.60 -11.66 2.98 -819.76 -2.44 -14.10 16 12 C 0.10 1.67 5.68 86.22 0.49 2.16 16 13 C -0.13 -2.83 5.13 30.53 0.16 -2.67 16 14 C -0.07 -1.75 2.15 -10.77 -0.02 -1.78 16 15 C -0.12 -4.07 5.01 30.60 0.15 -3.92 16 16 C 0.15 5.68 5.46 86.38 0.47 6.15 16 17 N -0.62 -31.37 2.92 -726.91 -2.12 -33.50 16 18 C 0.18 8.88 9.01 127.77 1.15 10.03 16 19 C -0.26 -14.30 9.66 84.03 0.81 -13.49 16 20 H 0.07 3.70 7.84 -2.91 -0.02 3.67 16 21 C -0.06 -3.22 5.16 84.86 0.44 -2.78 16 22 N -0.94 -56.78 10.62 21.65 0.23 -56.55 16 23 Si 0.97 45.91 29.57 68.60 2.03 47.93 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 C -0.12 -2.83 5.36 30.67 0.16 -2.66 16 28 C 0.12 2.29 6.42 86.36 0.55 2.84 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.97 7.88 -2.38 -0.02 0.95 16 31 H 0.05 0.88 5.63 -2.39 -0.01 0.86 16 32 H 0.09 1.09 7.25 -2.38 -0.02 1.07 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.42 6.36 7.77 -92.71 -0.72 5.64 16 35 H 0.11 0.58 8.14 -2.38 -0.02 0.57 16 36 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.39 5.10 -2.38 -0.01 1.37 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.90 6.50 -2.39 -0.02 1.88 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.87 6.43 -2.39 -0.02 1.85 16 46 H 0.06 1.94 7.86 -2.39 -0.02 1.92 16 47 H 0.00 0.07 7.33 -2.39 -0.02 0.05 16 48 H 0.01 0.68 7.33 -2.39 -0.02 0.66 16 49 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 50 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 51 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 52 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 53 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 54 H 0.08 1.76 7.04 -2.39 -0.02 1.74 16 Total: -1.00 -73.83 412.44 2.67 -71.17 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.16 Total: 16.41 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 7.14 Total: 13.73 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -6.57 Total: -118.76 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.09 Total: -30.48 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.83 2.67 -71.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496509126.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.034 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds