Wall clock time and date at job start Tue Mar 31 2020 22:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46962 * 2 1 4 4 H 1.08992 * 109.47682 * 305.00310 * 3 2 1 5 5 C 1.53009 * 109.46951 * 65.00606 * 3 2 1 6 6 C 1.50704 * 109.46918 * 185.00283 * 3 2 1 7 7 O 1.21274 * 120.00066 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99809 * 180.02562 * 6 3 2 9 9 C 1.46505 * 120.00049 * 179.97438 * 8 6 3 10 10 C 1.52998 * 109.47159 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.51936 * 59.87900 * 10 9 8 12 12 C 1.53114 * 109.52472 * 299.68770 * 10 9 8 13 13 C 1.53040 * 109.27746 * 182.43938 * 12 10 9 14 14 N 1.46847 * 109.52143 * 59.17799 * 13 12 10 15 15 C 1.46902 * 110.99751 * 174.15746 * 14 13 12 16 16 C 1.50706 * 109.47054 * 190.59792 * 15 14 13 17 17 O 1.21291 * 119.99887 * 6.27345 * 16 15 14 18 18 N 1.34773 * 119.99956 * 186.26832 * 16 15 14 19 19 C 1.37091 * 120.00169 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99957 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00662 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99432 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00461 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47160 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46998 * 119.99996 * 23 21 19 26 26 H 1.48493 * 109.47387 * 239.99995 * 23 21 19 27 27 C 1.46845 * 111.19903 * 298.25726 * 14 13 12 28 28 C 1.53036 * 109.52148 * 61.74317 * 27 14 13 29 29 H 1.08995 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46788 * 299.99442 * 1 2 3 31 31 H 1.08991 * 109.47670 * 59.99363 * 1 2 3 32 32 H 1.09005 * 109.46788 * 240.00558 * 2 1 3 33 33 H 1.09003 * 109.47273 * 120.00702 * 2 1 3 34 34 H 1.09000 * 109.46784 * 59.99886 * 5 3 2 35 35 H 1.08992 * 109.46871 * 300.00023 * 5 3 2 36 36 H 1.08999 * 109.47182 * 179.97438 * 5 3 2 37 37 H 0.97003 * 120.00009 * 0.02562 * 8 6 3 38 38 H 1.08992 * 109.46949 * 300.00229 * 9 8 6 39 39 H 1.09000 * 109.46490 * 60.00105 * 9 8 6 40 40 H 1.08997 * 109.47490 * 59.99693 * 11 10 9 41 41 H 1.09000 * 109.46934 * 180.02562 * 11 10 9 42 42 H 1.09001 * 109.47155 * 299.99629 * 11 10 9 43 43 H 1.09004 * 109.50511 * 302.37706 * 12 10 9 44 44 H 1.08998 * 109.51005 * 62.50118 * 12 10 9 45 45 H 1.08998 * 109.46627 * 299.16365 * 13 12 10 46 46 H 1.09001 * 109.46143 * 179.19292 * 13 12 10 47 47 H 1.08991 * 109.47419 * 310.60154 * 15 14 13 48 48 H 1.09004 * 109.46883 * 70.60397 * 15 14 13 49 49 H 0.97007 * 119.99911 * 0.02562 * 18 16 15 50 50 H 0.96997 * 119.99906 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.46038 * 301.72552 * 27 14 13 52 52 H 1.09006 * 109.46272 * 181.75791 * 27 14 13 53 53 H 1.09000 * 109.50218 * 180.88052 * 28 27 14 54 54 H 1.09003 * 109.53834 * 60.78297 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1265 1.3075 6 6 3.5419 1.4443 -0.1239 7 8 4.1449 0.3952 -0.2048 8 7 4.2149 2.6118 -0.1449 9 6 5.6750 2.6136 -0.2648 10 6 6.1850 4.0561 -0.2649 11 6 5.7777 4.7424 1.0405 12 6 5.5816 4.8120 -1.4518 13 6 6.1423 6.2357 -1.4819 14 7 7.6048 6.1847 -1.6033 15 6 8.1662 7.5314 -1.7743 16 6 9.6209 7.4249 -2.1534 17 8 10.1103 6.3387 -2.3808 18 7 10.3779 8.5366 -2.2397 19 6 11.7010 8.4398 -2.5851 20 1 12.1368 7.4727 -2.7883 21 6 12.4817 9.5858 -2.6736 22 7 11.9517 10.7626 -2.4258 23 14 14.2848 9.4538 -3.1434 24 1 14.6345 8.0283 -3.3689 25 1 14.5298 10.2259 -4.3881 26 1 15.1234 10.0024 -2.0476 27 6 8.2099 5.5048 -0.4510 28 6 7.7110 4.0593 -0.3902 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0700 1.5874 2.1492 35 1 0.5490 2.1251 1.3971 36 1 1.9989 3.1540 1.3077 37 1 3.7326 3.4509 -0.0798 38 1 6.1093 2.0744 0.5770 39 1 5.9636 2.1265 -1.1962 40 1 6.2103 4.2046 1.8841 41 1 6.1410 5.7701 1.0394 42 1 4.6912 4.7416 1.1278 43 1 5.8397 4.2997 -2.3788 44 1 4.4975 4.8501 -1.3461 45 1 5.8722 6.7520 -0.5607 46 1 5.7256 6.7722 -2.3343 47 1 7.6229 8.0542 -2.5614 48 1 8.0738 8.0849 -0.8398 49 1 9.9865 9.4053 -2.0575 50 1 12.4965 11.5627 -2.4879 51 1 7.9301 6.0245 0.4654 52 1 9.2950 5.5104 -0.5546 53 1 8.1481 3.5595 0.4742 54 1 8.0025 3.5345 -1.3000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500413194.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:57 Heat of formation + Delta-G solvation = -117.066902 kcal Electronic energy + Delta-G solvation = -30216.965770 eV Core-core repulsion = 26186.645771 eV Total energy + Delta-G solvation = -4030.319998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43992 -40.63771 -39.65779 -36.94723 -36.29255 -35.84507 -34.30601 -33.23822 -31.80099 -30.83052 -29.82049 -28.04578 -27.45375 -26.17115 -25.53782 -24.25773 -22.97951 -22.20731 -20.98688 -20.75046 -19.86764 -19.30222 -18.22776 -17.70610 -17.07291 -16.71325 -16.61837 -16.48093 -16.27244 -15.83888 -15.60337 -15.50287 -15.30280 -15.16714 -14.90021 -14.51844 -14.33108 -14.19937 -13.90573 -13.64006 -13.48266 -13.26289 -13.08815 -12.94475 -12.92886 -12.84335 -12.55335 -12.52462 -12.48027 -12.45671 -12.39029 -12.12443 -12.04723 -11.71410 -11.59819 -11.55691 -11.53686 -11.32276 -11.16342 -10.71255 -10.24076 -10.06382 -9.98146 -9.07139 -8.45999 -5.94167 1.36159 1.41311 1.55266 1.67587 2.08040 2.22924 2.28939 2.81262 3.21159 3.40496 3.62050 3.70648 3.74458 3.81146 3.89814 4.01865 4.22050 4.26394 4.32616 4.34592 4.42984 4.44437 4.50871 4.54894 4.57444 4.62487 4.66091 4.69720 4.75397 4.77663 4.79203 4.85146 4.98134 5.01177 5.04619 5.06052 5.12753 5.14460 5.15730 5.23164 5.28987 5.32586 5.39136 5.41872 5.47361 5.50677 5.52816 5.93724 6.14532 6.33492 6.58263 6.62756 7.14913 7.29024 7.58917 8.15514 8.71666 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036648 B = 0.001776 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.835201 B =15763.082069 C =16046.899598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.105 4.105 4 H 0.119 0.881 5 C -0.143 4.143 6 C 0.508 3.492 7 O -0.592 6.592 8 N -0.711 5.711 9 C 0.138 3.862 10 C -0.061 4.061 11 C -0.141 4.141 12 C -0.098 4.098 13 C 0.053 3.947 14 N -0.536 5.536 15 C 0.059 3.941 16 C 0.440 3.560 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.062 3.938 28 C -0.096 4.096 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.065 0.935 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.041 0.959 52 H 0.049 0.951 53 H 0.072 0.928 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.300 -10.431 8.931 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.126 4.126 4 H 0.137 0.863 5 C -0.200 4.200 6 C 0.296 3.704 7 O -0.472 6.472 8 N -0.364 5.364 9 C 0.014 3.986 10 C -0.061 4.061 11 C -0.198 4.198 12 C -0.136 4.136 13 C -0.073 4.073 14 N -0.261 5.261 15 C -0.072 4.072 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.214 5.214 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.066 4.066 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.252 0.748 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.128 0.872 48 H 0.083 0.917 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.059 0.941 52 H 0.067 0.933 53 H 0.091 0.909 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.353 -11.963 8.306 29.239 hybrid contribution 1.126 1.172 0.306 1.654 sum -24.227 -10.791 8.612 27.885 Atomic orbital electron populations 1.21810 0.93500 1.02316 1.02915 1.21322 0.96959 0.94460 1.01740 1.21405 0.89185 0.99489 1.02548 0.86299 1.21849 1.03535 1.00512 0.94090 1.21380 0.91393 0.83027 0.74554 1.90689 1.71632 1.33328 1.51567 1.45956 1.07288 1.09090 1.74083 1.21199 0.80314 0.96166 1.00917 1.20720 0.94651 0.93627 0.97110 1.21950 1.02254 1.00514 0.95125 1.21618 1.00326 0.94315 0.97334 1.22254 0.85564 0.97916 1.01609 1.61437 1.05748 1.16500 1.42452 1.21709 0.91794 0.91508 1.02180 1.20870 0.89507 0.84085 0.82756 1.90486 1.75277 1.28615 1.55681 1.41950 1.09635 1.08255 1.61545 1.19672 0.86541 0.94621 1.45254 0.90535 1.25992 1.04219 0.94061 0.96925 1.69676 1.38646 0.98363 1.49489 0.84897 0.77184 0.78154 0.78252 1.20008 1.19609 1.19595 1.22019 0.99035 0.94958 0.90577 1.21468 0.94782 0.95436 1.01727 0.92560 0.91132 0.91751 0.93267 0.92958 0.93221 0.89349 0.90619 0.74773 0.92415 0.93235 0.92483 0.92263 0.90414 0.92522 0.88572 0.92997 0.89849 0.87206 0.91689 0.77066 0.91365 0.94081 0.93279 0.90894 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 71.98 0.70 -0.54 16 2 C -0.11 -1.48 4.75 30.59 0.15 -1.33 16 3 C -0.11 -1.18 2.73 -11.54 -0.03 -1.21 16 4 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 5 C -0.14 -0.96 8.85 71.99 0.64 -0.33 16 6 C 0.51 9.62 7.15 87.66 0.63 10.25 16 7 O -0.59 -17.30 15.92 -3.01 -0.05 -17.35 16 8 N -0.71 -10.41 4.87 -463.06 -2.26 -12.67 16 9 C 0.14 2.68 4.57 86.38 0.39 3.07 16 10 C -0.06 -1.10 0.53 -52.11 -0.03 -1.12 16 11 C -0.14 -1.99 7.73 71.98 0.56 -1.43 16 12 C -0.10 -1.71 4.68 30.65 0.14 -1.57 16 13 C 0.05 1.11 5.21 86.33 0.45 1.56 16 14 N -0.54 -16.66 4.35 -900.91 -3.92 -20.57 16 15 C 0.06 2.02 5.45 85.56 0.47 2.48 16 16 C 0.44 21.04 7.31 87.66 0.64 21.68 16 17 O -0.61 -34.37 14.29 -3.06 -0.04 -34.42 16 18 N -0.58 -29.67 5.29 -306.98 -1.62 -31.30 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 23 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C 0.06 1.93 4.87 86.33 0.42 2.35 16 28 C -0.10 -2.47 4.88 30.64 0.15 -2.32 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.41 6.57 -2.38 -0.02 0.40 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.88 7.95 -2.38 -0.02 0.86 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.32 6.56 -2.39 -0.02 0.31 16 36 H 0.07 0.28 7.56 -2.39 -0.02 0.26 16 37 H 0.41 3.43 5.61 -92.71 -0.52 2.91 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.93 4.93 -2.39 -0.01 0.92 16 42 H 0.08 0.69 6.86 -2.39 -0.02 0.67 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.10 1.02 6.96 -2.39 -0.02 1.01 16 45 H 0.05 0.91 6.52 -2.39 -0.02 0.89 16 46 H 0.08 1.59 8.01 -2.39 -0.02 1.57 16 47 H 0.11 3.27 7.97 -2.39 -0.02 3.25 16 48 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 49 H 0.40 19.28 7.90 -92.70 -0.73 18.55 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 51 H 0.04 1.13 6.51 -2.39 -0.02 1.11 16 52 H 0.05 2.01 6.06 -2.38 -0.01 2.00 16 53 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 54 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.30 411.30 0.62 -74.68 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.35 Total: 32.49 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.55 Total: 13.18 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -7.51 Total: -113.96 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.76 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -75.30 0.62 -74.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500413194.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.383 kcal (2) G-P(sol) polarization free energy of solvation -75.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds