Wall clock time and date at job start Wed Apr 1 2020 00:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47447 * 2 1 4 4 N 1.46492 * 109.47360 * 180.02562 * 3 2 1 5 5 C 1.46765 * 124.35239 * 90.00276 * 4 3 2 6 6 C 1.54480 * 105.47228 * 197.01510 * 5 4 3 7 7 H 1.09006 * 110.97052 * 92.70071 * 6 5 4 8 8 C 1.50693 * 110.97095 * 216.42335 * 6 5 4 9 9 O 1.21289 * 119.99755 * 23.65077 * 8 6 5 10 10 N 1.34777 * 120.00459 * 203.65442 * 8 6 5 11 11 C 1.46499 * 119.99672 * 5.46223 * 10 8 6 12 12 C 1.46504 * 120.00261 * 185.47654 * 10 8 6 13 13 C 1.53000 * 109.47360 * 89.99259 * 12 10 8 14 14 C 1.52996 * 109.46969 * 299.99952 * 13 12 10 15 15 C 1.52992 * 109.47124 * 60.00279 * 13 12 10 16 16 C 1.53002 * 109.46833 * 180.02562 * 13 12 10 17 17 N 1.46498 * 109.46795 * 179.97438 * 16 13 12 18 18 C 1.36945 * 119.99733 * 179.97438 * 17 16 13 19 19 H 1.08002 * 120.00062 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99542 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99691 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00498 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47219 * 89.99728 * 22 20 18 24 24 H 1.48494 * 109.47244 * 209.99902 * 22 20 18 25 25 H 1.48499 * 109.46815 * 330.00217 * 22 20 18 26 26 C 1.54625 * 101.76729 * 334.58299 * 6 5 4 27 27 C 1.34421 * 124.34916 * 269.69811 * 4 3 2 28 28 O 1.21283 * 124.94002 * 359.57171 * 27 4 3 29 29 H 1.09005 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46746 * 299.99744 * 1 2 3 31 31 H 1.09000 * 109.47204 * 60.00205 * 1 2 3 32 32 H 1.08996 * 109.47002 * 239.99833 * 2 1 3 33 33 H 1.09000 * 109.46820 * 120.00174 * 2 1 3 34 34 H 1.09000 * 109.46901 * 300.00604 * 3 2 1 35 35 H 1.09004 * 109.47159 * 59.99664 * 3 2 1 36 36 H 1.09004 * 110.24199 * 316.01092 * 5 4 3 37 37 H 1.08992 * 110.24800 * 77.92822 * 5 4 3 38 38 H 1.09000 * 109.46428 * 84.56565 * 11 10 8 39 39 H 1.08996 * 109.47246 * 204.55622 * 11 10 8 40 40 H 1.08998 * 109.47727 * 324.56426 * 11 10 8 41 41 H 1.08999 * 109.46546 * 209.99556 * 12 10 8 42 42 H 1.09000 * 109.46642 * 329.99450 * 12 10 8 43 43 H 1.08998 * 109.47256 * 60.00397 * 14 13 12 44 44 H 1.09009 * 109.46831 * 180.02562 * 14 13 12 45 45 H 1.09000 * 109.47634 * 300.00177 * 14 13 12 46 46 H 1.08999 * 109.47394 * 59.99329 * 15 13 12 47 47 H 1.09001 * 109.47369 * 180.02562 * 15 13 12 48 48 H 1.09006 * 109.47033 * 299.99898 * 15 13 12 49 49 H 1.08998 * 109.47184 * 299.99852 * 16 13 12 50 50 H 1.09000 * 109.47015 * 60.00286 * 16 13 12 51 51 H 0.96995 * 120.00401 * 0.02562 * 17 16 13 52 52 H 0.96996 * 120.00233 * 179.97438 * 21 20 18 53 53 H 1.09000 * 110.49104 * 143.47717 * 26 6 5 54 54 H 1.08999 * 110.48582 * 266.11853 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3326 1.4426 -1.2126 6 6 5.7407 1.0069 -0.7502 7 1 5.8666 -0.0716 -0.8465 8 6 6.8111 1.7422 -1.5147 9 8 6.5632 2.8133 -2.0268 10 7 8.0438 1.2096 -1.6296 11 6 8.3111 -0.1360 -1.1156 12 6 9.1165 1.9763 -2.2681 13 6 9.8510 2.8035 -1.2112 14 6 8.8669 3.7642 -0.5409 15 6 10.4495 1.8693 -0.1577 16 6 10.9709 3.6047 -1.8782 17 7 11.6738 4.3972 -0.8663 18 6 12.7222 5.1991 -1.2313 19 1 13.0305 5.2476 -2.2652 20 6 13.3885 5.9495 -0.2723 21 7 14.3965 6.7199 -0.6230 22 14 12.8548 5.8663 1.5159 23 1 13.5999 4.7821 2.2048 24 1 13.1423 7.1633 2.1792 25 1 11.3980 5.5870 1.5850 26 6 5.7301 1.4322 0.7364 27 6 4.2639 1.4481 1.1088 28 8 3.8355 1.4613 2.2434 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9377 0.7325 -1.9392 37 1 4.3688 2.4427 -1.6445 38 1 8.0286 -0.8742 -1.8661 39 1 9.3730 -0.2347 -0.8907 40 1 7.7306 -0.3002 -0.2078 41 1 9.8176 1.2918 -2.7457 42 1 8.6901 2.6419 -3.0186 43 1 8.0688 3.1938 -0.0657 44 1 9.3903 4.3538 0.2119 45 1 8.4405 4.4298 -1.2914 46 1 11.1506 1.1848 -0.6353 47 1 10.9724 2.4586 0.5955 48 1 9.6514 1.2988 0.3174 49 1 11.6721 2.9206 -2.3561 50 1 10.5441 4.2703 -2.6285 51 1 11.3972 4.3534 0.0624 52 1 14.8619 7.2446 0.0469 53 1 6.2732 0.7085 1.3442 54 1 6.1598 2.4272 0.8515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505837168.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:29 Heat of formation + Delta-G solvation = -82.141080 kcal Electronic energy + Delta-G solvation = -31154.095691 eV Core-core repulsion = 27125.290190 eV Total energy + Delta-G solvation = -4028.805501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.08016 -40.79467 -38.87147 -37.50264 -36.48746 -35.78010 -34.84660 -32.86126 -32.34447 -29.06080 -28.72909 -28.31281 -27.61894 -27.30092 -26.48875 -24.44802 -23.26997 -22.73064 -20.60578 -20.44010 -20.00731 -19.30056 -18.57895 -17.90275 -17.13448 -17.03273 -16.83496 -16.47529 -16.08295 -15.68416 -15.58049 -15.51629 -15.17566 -14.77861 -14.70248 -14.68722 -14.44498 -14.24803 -14.02073 -13.92717 -13.75885 -13.64652 -13.27153 -13.13339 -13.10576 -12.87531 -12.82895 -12.57618 -12.52077 -12.42916 -12.37301 -12.25206 -12.17701 -12.06144 -11.73091 -11.66841 -11.65219 -11.50640 -11.12921 -10.98655 -10.67569 -9.78219 -9.54774 -9.27567 -8.03599 -5.35264 1.33736 1.36868 1.39679 1.43885 1.54769 1.84018 2.10996 2.45860 3.12785 3.27710 3.37413 3.55640 3.68551 3.83184 3.88968 3.93943 3.98689 4.02711 4.06003 4.08605 4.32638 4.39437 4.45633 4.47370 4.52233 4.56296 4.59085 4.65495 4.69425 4.74371 4.80129 4.84835 4.86742 4.92311 4.93107 4.95688 5.05250 5.13451 5.13954 5.16792 5.17369 5.18405 5.32259 5.40131 5.51340 5.53546 5.59003 5.75817 6.00163 6.21042 6.43935 7.02789 7.07884 7.18563 7.85449 8.03931 9.18171 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.002421 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.878762 B =11563.863723 C =12175.976803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.118 3.882 4 N -0.613 5.613 5 C 0.115 3.885 6 C -0.111 4.111 7 H 0.150 0.850 8 C 0.522 3.478 9 O -0.567 6.567 10 N -0.602 5.602 11 C 0.059 3.941 12 C 0.135 3.865 13 C -0.081 4.081 14 C -0.119 4.119 15 C -0.135 4.135 16 C 0.165 3.835 17 N -0.753 5.753 18 C -0.229 4.229 19 H 0.057 0.943 20 C -0.064 4.064 21 N -0.983 5.983 22 Si 0.949 3.051 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.259 1.259 26 C -0.136 4.136 27 C 0.513 3.487 28 O -0.577 6.577 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.030 0.970 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.032 0.968 48 H 0.080 0.920 49 H 0.035 0.965 50 H 0.014 0.986 51 H 0.365 0.635 52 H 0.257 0.743 53 H 0.132 0.868 54 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.386 -23.524 -1.846 35.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.003 4.003 4 N -0.346 5.346 5 C -0.008 4.008 6 C -0.132 4.132 7 H 0.168 0.832 8 C 0.310 3.690 9 O -0.446 6.446 10 N -0.333 5.333 11 C -0.083 4.083 12 C 0.011 3.989 13 C -0.082 4.082 14 C -0.177 4.177 15 C -0.192 4.192 16 C 0.038 3.962 17 N -0.399 5.399 18 C -0.361 4.361 19 H 0.075 0.925 20 C -0.255 4.255 21 N -0.634 5.634 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.223 1.223 25 H -0.184 1.184 26 C -0.177 4.177 27 C 0.302 3.698 28 O -0.457 6.457 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.032 0.968 51 H 0.200 0.800 52 H 0.066 0.934 53 H 0.150 0.850 54 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.685 -22.894 -1.712 35.202 hybrid contribution 0.383 1.030 1.096 1.552 sum -26.302 -21.864 -0.616 34.208 Atomic orbital electron populations 1.21690 0.93981 1.02618 1.02330 1.21826 0.97090 0.95829 1.02335 1.21625 0.76898 0.98207 1.03543 1.48437 1.06988 1.72047 1.07095 1.22124 0.87923 1.03840 0.86899 1.22257 0.93304 1.03813 0.93846 0.83185 1.20403 0.83452 0.85247 0.79878 1.90746 1.81308 1.23690 1.48822 1.47776 1.08775 1.17902 1.58833 1.22324 1.04329 0.80999 1.00611 1.21344 0.88832 0.95136 0.93586 1.21067 0.94496 0.95631 0.97011 1.21674 0.97911 0.98484 0.99586 1.21897 1.00802 0.98678 0.97810 1.20744 0.92199 0.92431 0.90819 1.42734 1.37518 1.53000 1.06680 1.19064 1.05729 1.16876 0.94393 0.92452 1.25449 0.98439 0.99443 1.02197 1.69874 1.25617 1.33451 1.34470 0.85499 0.78782 0.77061 0.80990 1.19847 1.22329 1.18402 1.22282 0.94042 1.05549 0.95793 1.21157 0.90036 0.74479 0.84166 1.90711 1.79420 1.52701 1.22875 0.91690 0.93119 0.91334 0.90259 0.93443 0.88168 0.91712 0.86871 0.90579 0.89972 0.89431 0.89274 0.87762 0.91267 0.92409 0.95098 0.94213 0.91205 0.94911 0.90161 0.94686 0.96842 0.80031 0.93400 0.84984 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.13 -1.39 6.26 30.59 0.19 -1.19 16 3 C 0.12 1.57 5.94 86.38 0.51 2.08 16 4 N -0.61 -9.68 2.93 -818.00 -2.40 -12.08 16 5 C 0.11 1.38 6.85 86.83 0.59 1.98 16 6 C -0.11 -1.21 2.56 -10.49 -0.03 -1.24 16 7 H 0.15 0.54 6.74 -2.38 -0.02 0.52 16 8 C 0.52 9.20 5.01 87.65 0.44 9.64 16 9 O -0.57 -15.15 13.87 -3.06 -0.04 -15.19 16 10 N -0.60 -8.92 2.40 -846.76 -2.03 -10.95 16 11 C 0.06 0.37 8.57 127.77 1.10 1.46 16 12 C 0.13 2.77 4.59 86.38 0.40 3.17 16 13 C -0.08 -2.21 0.60 -52.19 -0.03 -2.24 16 14 C -0.12 -3.73 7.06 71.98 0.51 -3.22 16 15 C -0.13 -3.18 7.07 71.98 0.51 -2.67 16 16 C 0.16 6.15 5.15 86.38 0.44 6.59 16 17 N -0.75 -35.48 4.81 -343.45 -1.65 -37.14 16 18 C -0.23 -13.31 10.47 84.03 0.88 -12.43 16 19 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 20 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 21 N -0.98 -63.99 13.97 21.65 0.30 -63.68 16 22 Si 0.95 46.62 27.74 68.60 1.90 48.52 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.26 -11.77 6.52 99.48 0.65 -11.12 16 26 C -0.14 -2.03 6.28 30.59 0.19 -1.84 16 27 C 0.51 10.78 8.02 87.90 0.71 11.48 16 28 O -0.58 -17.24 17.59 -3.04 -0.05 -17.29 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.11 7.92 -2.38 -0.02 1.09 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.28 6.89 -2.39 -0.02 1.26 16 38 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.09 0.56 6.30 -2.39 -0.02 0.54 16 40 H 0.09 0.24 6.40 -2.39 -0.02 0.22 16 41 H 0.10 1.67 8.07 -2.39 -0.02 1.65 16 42 H 0.07 1.73 7.35 -2.39 -0.02 1.72 16 43 H 0.06 1.56 5.66 -2.39 -0.01 1.55 16 44 H 0.03 1.09 6.86 -2.38 -0.02 1.08 16 45 H 0.04 1.39 7.86 -2.39 -0.02 1.37 16 46 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16 47 H 0.03 0.96 6.86 -2.39 -0.02 0.94 16 48 H 0.08 1.39 6.07 -2.38 -0.01 1.37 16 49 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.37 16.66 3.22 -92.71 -0.30 16.36 16 52 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 53 H 0.13 1.36 7.99 -2.39 -0.02 1.34 16 54 H 0.09 1.79 7.33 -2.39 -0.02 1.77 16 Total: -1.00 -82.42 411.26 4.14 -78.29 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.52 Total: 21.83 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 7.59 Total: 7.70 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -5.78 Total: -123.85 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.10 Total: -32.48 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.52 kcal Total: -82.42 4.14 -78.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505837168.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.856 kcal (2) G-P(sol) polarization free energy of solvation -82.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds