Wall clock time and date at job start Tue Mar 31 2020 23:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 H 1.09002 * 109.47061 * 304.99165 * 3 2 1 5 5 C 1.53005 * 109.46874 * 184.99848 * 3 2 1 6 6 N 1.46501 * 109.46949 * 184.99865 * 5 3 2 7 7 C 1.34775 * 119.99467 * 179.72330 * 6 5 3 8 8 O 1.21282 * 120.00341 * 0.27563 * 7 6 5 9 9 C 1.50708 * 119.99649 * 180.27498 * 7 6 5 10 10 C 1.53039 * 109.45790 * 300.02596 * 9 7 6 11 11 C 1.53198 * 109.31015 * 178.60077 * 10 9 7 12 12 N 1.46924 * 108.76496 * 54.65879 * 11 10 9 13 13 C 1.34774 * 120.63566 * 126.36168 * 12 11 10 14 14 O 1.21275 * 120.00511 * 175.33177 * 13 12 11 15 15 C 1.50703 * 119.99566 * 355.33008 * 13 12 11 16 16 C 1.53001 * 109.47205 * 155.34071 * 15 13 12 17 17 C 1.52998 * 109.47461 * 275.34602 * 15 13 12 18 18 C 1.46928 * 118.73808 * 306.38130 * 12 11 10 19 19 C 1.53042 * 109.45851 * 179.97438 * 9 7 6 20 20 N 1.46497 * 109.47527 * 64.99962 * 3 2 1 21 21 C 1.36939 * 119.99515 * 274.99810 * 20 3 2 22 22 H 1.07992 * 120.00367 * 0.02562 * 21 20 3 23 23 C 1.38818 * 119.99613 * 179.97438 * 21 20 3 24 24 N 1.31617 * 120.00316 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99574 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46727 * 90.00902 * 25 23 21 27 27 H 1.48505 * 109.46799 * 210.00187 * 25 23 21 28 28 H 1.48495 * 109.47525 * 330.00088 * 25 23 21 29 29 H 1.09000 * 109.47464 * 300.00586 * 1 2 3 30 30 H 1.09001 * 109.46622 * 60.00621 * 1 2 3 31 31 H 1.08996 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47464 * 239.99414 * 2 1 3 33 33 H 1.09001 * 109.46622 * 119.99379 * 2 1 3 34 34 H 1.08995 * 109.47183 * 64.99513 * 5 3 2 35 35 H 1.09008 * 109.46776 * 304.99961 * 5 3 2 36 36 H 0.96992 * 120.00383 * 0.02562 * 6 5 3 37 37 H 1.08993 * 109.46017 * 60.00136 * 9 7 6 38 38 H 1.08998 * 109.49684 * 298.56556 * 10 9 7 39 39 H 1.09003 * 109.49750 * 58.66508 * 10 9 7 40 40 H 1.08998 * 109.59765 * 294.87264 * 11 10 9 41 41 H 1.08993 * 109.69820 * 174.50789 * 11 10 9 42 42 H 1.09008 * 109.46931 * 35.34447 * 15 13 12 43 43 H 1.09006 * 109.46752 * 59.99812 * 16 15 13 44 44 H 1.08996 * 109.47395 * 180.02562 * 16 15 13 45 45 H 1.09004 * 109.47246 * 300.00356 * 16 15 13 46 46 H 1.09000 * 109.46494 * 304.98402 * 17 15 13 47 47 H 1.08998 * 109.47387 * 64.98063 * 17 15 13 48 48 H 1.08993 * 109.47404 * 184.98697 * 17 15 13 49 49 H 1.08999 * 109.58611 * 293.82593 * 18 12 11 50 50 H 1.09004 * 109.70465 * 173.46440 * 18 12 11 51 51 H 1.09002 * 109.49631 * 301.33824 * 19 9 7 52 52 H 1.09001 * 109.49434 * 61.43569 * 19 9 7 53 53 H 0.96996 * 120.00262 * 94.99372 * 20 3 2 54 54 H 0.96997 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0060 7 6 5.3862 3.0622 -0.0807 8 8 6.1639 2.1475 -0.2521 9 6 5.8992 4.4734 0.0486 10 6 5.2987 5.3380 -1.0622 11 6 5.7948 6.7790 -0.9067 12 7 7.2637 6.7724 -0.8750 13 6 7.9724 7.5465 -1.7206 14 8 9.1806 7.5967 -1.6287 15 6 7.2633 8.3498 -2.7803 16 6 8.1270 9.5499 -3.1738 17 6 7.0205 7.4713 -4.0091 18 6 7.9455 5.9053 0.0956 19 6 7.4250 4.4741 -0.0709 20 7 1.6525 2.0975 1.2517 21 6 0.4156 2.6735 1.3686 22 1 -0.2742 2.6446 0.5382 23 6 0.0482 3.2938 2.5549 24 7 0.8887 3.3287 3.5671 25 14 -1.6388 4.0802 2.7141 26 1 -2.6057 3.0774 3.2286 27 1 -1.5642 5.2251 3.6569 28 1 -2.0874 4.5632 1.3834 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8499 1.0376 -1.0959 35 1 3.9954 0.8310 0.6660 36 1 3.4411 3.5482 0.1315 37 1 5.6108 4.8770 1.0191 38 1 5.6073 4.9494 -2.0326 39 1 4.2112 5.3182 -0.9909 40 1 5.4112 7.1995 0.0229 41 1 5.4502 7.3791 -1.7487 42 1 6.3080 8.7019 -2.3909 43 1 9.0823 9.1978 -3.5631 44 1 7.6140 10.1312 -3.9399 45 1 8.3000 10.1758 -2.2983 46 1 7.9668 7.0478 -4.3456 47 1 6.3336 6.6657 -3.7499 48 1 6.5882 8.0746 -4.8074 49 1 7.7372 6.2545 1.1069 50 1 9.0204 5.9264 -0.0842 51 1 7.8510 3.8393 0.7060 52 1 7.7132 4.0938 -1.0509 53 1 2.2719 2.1232 1.9977 54 1 0.6321 3.7624 4.3959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567970493.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:18 Heat of formation + Delta-G solvation = -106.344407 kcal Electronic energy + Delta-G solvation = -30783.392597 eV Core-core repulsion = 26753.537561 eV Total energy + Delta-G solvation = -4029.855036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.64648 -40.70460 -38.54711 -37.92929 -35.57369 -35.23273 -34.22425 -33.76649 -32.08125 -31.46019 -29.56720 -28.06434 -27.32665 -25.58716 -24.82180 -24.00219 -23.60215 -22.02469 -21.56131 -20.81288 -19.65033 -19.20291 -18.63411 -17.83633 -17.11014 -16.90114 -16.72723 -16.42783 -16.14487 -15.75523 -15.52702 -15.30055 -15.10359 -14.83452 -14.64810 -14.59100 -14.31812 -14.20957 -13.99186 -13.63093 -13.55099 -13.34944 -13.11789 -12.99247 -12.94410 -12.79185 -12.77094 -12.73440 -12.33318 -12.28346 -12.06865 -12.05750 -11.98917 -11.86858 -11.75067 -11.66311 -11.56337 -11.31080 -10.92780 -10.76544 -10.62041 -9.97030 -9.70304 -8.94144 -7.84116 -5.10933 1.52664 1.55360 1.58226 1.61393 1.68373 1.98028 2.32456 2.63079 3.43612 3.49770 3.64366 3.69484 3.78680 3.92691 3.94540 3.99774 4.03021 4.09440 4.22662 4.29234 4.38408 4.41500 4.47530 4.50963 4.58101 4.65283 4.69095 4.74152 4.76536 4.79934 4.82315 4.87430 4.90135 4.91723 4.97418 5.07235 5.08761 5.12254 5.15905 5.22175 5.23944 5.31764 5.33555 5.51415 5.52298 5.61133 5.65666 5.73583 6.35903 6.38508 6.65819 7.14389 7.30607 7.44299 8.15688 8.40879 9.38669 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.002619 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.986505 B =10689.842865 C =11652.553419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.062 0.938 5 C 0.122 3.878 6 N -0.707 5.707 7 C 0.513 3.487 8 O -0.591 6.591 9 C -0.101 4.101 10 C -0.120 4.120 11 C 0.104 3.896 12 N -0.610 5.610 13 C 0.512 3.488 14 O -0.589 6.589 15 C -0.113 4.113 16 C -0.134 4.134 17 C -0.139 4.139 18 C 0.114 3.886 19 C -0.101 4.101 20 N -0.726 5.726 21 C -0.213 4.213 22 H 0.081 0.919 23 C -0.071 4.071 24 N -0.967 5.967 25 Si 0.956 3.044 26 H -0.299 1.299 27 H -0.303 1.303 28 H -0.267 1.267 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.412 0.588 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.372 0.628 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 9.009 -14.247 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.358 5.358 7 C 0.300 3.700 8 O -0.472 6.472 9 C -0.123 4.123 10 C -0.158 4.158 11 C -0.017 4.017 12 N -0.343 5.343 13 C 0.302 3.698 14 O -0.470 6.470 15 C -0.134 4.134 16 C -0.191 4.191 17 C -0.197 4.197 18 C -0.009 4.009 19 C -0.140 4.140 20 N -0.367 5.367 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.263 4.263 24 N -0.619 5.619 25 Si 0.787 3.213 26 H -0.227 1.227 27 H -0.230 1.230 28 H -0.191 1.191 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.110 0.890 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.092 0.908 52 H 0.074 0.926 53 H 0.204 0.796 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.856 8.451 -14.386 18.889 hybrid contribution -0.813 0.151 1.238 1.489 sum 8.043 8.602 -13.148 17.651 Atomic orbital electron populations 1.21698 0.95910 1.00530 1.01879 1.22011 0.96690 0.97665 1.00856 1.20688 0.90827 0.93066 0.89633 0.91995 1.21527 0.94412 0.83277 1.01073 1.45970 1.07314 1.10376 1.72105 1.21061 0.81992 0.91764 0.75161 1.90651 1.56923 1.47998 1.51600 1.21318 0.96678 0.91450 1.02819 1.21908 1.01840 0.94566 0.97507 1.22066 0.77611 0.96733 1.05323 1.48294 1.07982 1.42254 1.35733 1.21403 0.87231 0.79334 0.81844 1.90651 1.16454 1.66721 1.73134 1.21434 1.01024 0.96386 0.94585 1.21655 0.99472 0.96045 1.01944 1.21758 1.01893 0.99766 0.96287 1.21558 0.97830 0.88665 0.92821 1.21580 0.93510 0.96191 1.02722 1.42569 1.15777 1.66019 1.12304 1.19478 0.92433 1.25111 0.97444 0.90164 1.25326 1.00699 1.03595 0.96677 1.69796 1.36707 1.51069 1.04298 0.85389 0.81043 0.77373 0.77448 1.22719 1.23013 1.19142 0.93235 0.92993 0.93082 0.90855 0.93877 0.90579 0.93635 0.75085 0.87131 0.91177 0.88352 0.89202 0.86347 0.86120 0.93527 0.89390 0.93119 0.93787 0.91479 0.89000 0.89928 0.90377 0.90822 0.92570 0.79606 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.18 71.98 0.66 -3.92 16 2 C -0.13 -4.09 5.61 30.60 0.17 -3.92 16 3 C 0.17 5.52 2.59 44.99 0.12 5.63 16 4 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 5 C 0.12 3.77 5.23 86.38 0.45 4.22 16 6 N -0.71 -20.63 5.27 -463.04 -2.44 -23.08 16 7 C 0.51 15.17 7.15 87.66 0.63 15.79 16 8 O -0.59 -21.88 15.98 -3.04 -0.05 -21.93 16 9 C -0.10 -2.22 2.49 -11.51 -0.03 -2.25 16 10 C -0.12 -1.92 5.27 30.67 0.16 -1.76 16 11 C 0.10 1.35 6.25 86.36 0.54 1.89 16 12 N -0.61 -11.47 2.97 -818.90 -2.43 -13.90 16 13 C 0.51 11.12 6.81 87.66 0.60 11.71 16 14 O -0.59 -17.96 15.53 -3.02 -0.05 -18.00 16 15 C -0.11 -1.57 2.42 -11.54 -0.03 -1.60 16 16 C -0.13 -1.90 8.72 71.98 0.63 -1.28 16 17 C -0.14 -1.66 9.09 71.98 0.65 -1.01 16 18 C 0.11 2.38 6.41 86.36 0.55 2.93 16 19 C -0.10 -2.33 4.65 30.67 0.14 -2.19 16 20 N -0.73 -30.80 4.51 -322.94 -1.46 -32.26 16 21 C -0.21 -10.06 7.75 84.03 0.65 -9.40 16 22 H 0.08 3.64 7.32 -2.91 -0.02 3.62 16 23 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 24 N -0.97 -54.34 13.06 21.65 0.28 -54.05 16 25 Si 0.96 42.38 29.55 68.60 2.03 44.41 16 26 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 29 H 0.05 1.94 5.99 -2.39 -0.01 1.93 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.41 11.77 7.54 -92.71 -0.70 11.07 16 37 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.40 7.53 -2.39 -0.02 1.39 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 0.93 5.14 -2.39 -0.01 0.92 16 42 H 0.12 1.02 6.29 -2.38 -0.01 1.00 16 43 H 0.05 0.85 7.87 -2.38 -0.02 0.83 16 44 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.74 7.84 -2.39 -0.02 0.72 16 48 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.08 1.90 7.04 -2.38 -0.02 1.89 16 51 H 0.07 1.83 8.07 -2.39 -0.02 1.81 16 52 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 53 H 0.37 17.82 7.80 -92.71 -0.72 17.09 16 54 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -67.69 420.25 1.71 -65.97 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.54 Total: 41.15 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.37 Total: 11.69 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.05 Total: -123.29 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.10 Total: -39.93 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -67.69 1.71 -65.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567970493.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.370 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds