Wall clock time and date at job start Wed Apr 1 2020 00:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47111 * 2 1 4 4 N 1.46903 * 109.47589 * 119.99932 * 2 1 3 5 5 C 1.47849 * 110.99972 * 50.96189 * 4 2 1 6 6 C 1.54906 * 104.79428 * 146.36405 * 5 4 2 7 7 C 1.55390 * 101.74524 * 323.02098 * 6 5 4 8 8 C 1.47444 * 111.00512 * 171.80800 * 4 2 1 9 9 H 1.08994 * 109.89106 * 117.17213 * 8 4 2 10 10 C 1.50707 * 109.88619 * 356.14764 * 8 4 2 11 11 O 1.21283 * 119.99840 * 298.81078 * 10 8 4 12 12 N 1.34775 * 119.99832 * 118.80519 * 10 8 4 13 13 C 1.46921 * 120.63310 * 354.73311 * 12 10 8 14 14 C 1.53192 * 108.78188 * 126.40854 * 13 12 10 15 15 C 1.53043 * 109.30701 * 54.63143 * 14 13 12 16 16 C 1.53040 * 109.54229 * 298.63533 * 15 14 13 17 17 C 1.52995 * 109.49972 * 181.35073 * 16 15 14 18 18 O 1.42900 * 109.46885 * 65.06396 * 17 16 15 19 19 N 1.46500 * 109.49863 * 301.41890 * 16 15 14 20 20 C 1.36936 * 119.99900 * 300.20700 * 19 16 15 21 21 H 1.08004 * 119.99834 * 359.73223 * 20 19 16 22 22 C 1.38807 * 120.00121 * 179.72145 * 20 19 16 23 23 N 1.31626 * 120.00188 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00181 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46850 * 90.00371 * 24 22 20 26 26 H 1.48496 * 109.46950 * 210.00298 * 24 22 20 27 27 H 1.48502 * 109.47131 * 330.00372 * 24 22 20 28 28 C 1.47000 * 120.61033 * 174.74724 * 12 10 8 29 29 H 1.09004 * 109.46911 * 299.99777 * 1 2 3 30 30 H 1.08989 * 109.47296 * 60.00187 * 1 2 3 31 31 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47700 * 239.99980 * 2 1 3 33 33 H 1.09003 * 109.46973 * 53.40392 * 3 2 1 34 34 H 1.08997 * 109.46900 * 173.40376 * 3 2 1 35 35 H 1.08997 * 109.46838 * 293.40262 * 3 2 1 36 36 H 1.08996 * 110.37373 * 265.19865 * 5 4 2 37 37 H 1.09000 * 110.36635 * 27.42561 * 5 4 2 38 38 H 1.09006 * 110.98843 * 81.02810 * 6 5 4 39 39 H 1.09000 * 110.98767 * 204.79996 * 6 5 4 40 40 H 1.08996 * 110.68150 * 277.18004 * 7 6 5 41 41 H 1.09003 * 110.84554 * 153.86122 * 7 6 5 42 42 H 1.09007 * 109.58577 * 6.61488 * 13 12 10 43 43 H 1.09003 * 109.69975 * 246.26996 * 13 12 10 44 44 H 1.09003 * 109.49604 * 294.68347 * 14 13 12 45 45 H 1.08989 * 109.49913 * 174.58327 * 14 13 12 46 46 H 1.09005 * 109.45507 * 178.61617 * 15 14 13 47 47 H 1.08997 * 109.44643 * 58.65548 * 15 14 13 48 48 H 1.08997 * 109.47263 * 185.06803 * 17 16 15 49 49 H 1.08998 * 109.47412 * 305.06935 * 17 16 15 50 50 H 0.96708 * 113.99791 * 179.97438 * 18 17 16 51 51 H 0.96995 * 119.99827 * 119.93020 * 19 16 15 52 52 H 0.97001 * 120.00266 * 179.97438 * 23 22 20 53 53 H 1.08994 * 109.57552 * 113.81465 * 28 12 10 54 54 H 1.08996 * 109.63032 * 353.36403 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3768 -2.0156 1.3470 6 6 2.4657 -2.9160 1.9819 7 6 3.7527 -2.3965 1.2830 8 6 3.4804 -0.8843 1.1395 9 1 3.9594 -0.3423 1.9548 10 6 4.0083 -0.3916 -0.1833 11 8 3.6268 -0.9005 -1.2160 12 7 4.9043 0.6146 -0.2186 13 6 5.2892 1.3178 1.0126 14 6 6.8157 1.2918 1.1388 15 6 7.4386 1.8677 -0.1350 16 6 7.0384 1.0065 -1.3352 17 6 7.6889 1.5635 -2.6030 18 8 9.1088 1.4361 -2.5051 19 7 7.4874 -0.3712 -1.1199 20 6 8.8194 -0.6381 -0.9468 21 1 9.5392 0.1667 -0.9733 22 6 9.2443 -1.9428 -0.7370 23 7 8.3671 -2.9236 -0.7050 24 14 11.0613 -2.3069 -0.5016 25 1 11.3988 -2.2282 0.9423 26 1 11.3624 -3.6705 -1.0068 27 1 11.8671 -1.3114 -1.2533 28 6 5.5144 1.0292 -1.4901 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.5834 1.9893 0.8251 34 1 3.1235 1.4448 0.1180 35 1 1.7762 1.9211 -0.9431 36 1 0.5110 -1.9455 2.0054 37 1 1.0811 -2.4045 0.3726 38 1 2.5200 -2.7620 3.0597 39 1 2.2895 -3.9659 1.7480 40 1 3.8734 -2.8609 0.3043 41 1 4.6301 -2.5728 1.9052 42 1 4.8428 0.8191 1.8730 43 1 4.9437 2.3507 0.9692 44 1 7.1520 0.2640 1.2756 45 1 7.1202 1.8919 1.9961 46 1 8.5243 1.8730 -0.0379 47 1 7.0824 2.8869 -0.2844 48 1 7.3329 1.0057 -3.4691 49 1 7.4254 2.6152 -2.7147 50 1 9.5877 1.7697 -3.2762 51 1 6.8409 -1.0939 -1.0959 52 1 8.6640 -3.8353 -0.5588 53 1 5.1876 2.0385 -1.7400 54 1 5.2172 0.3404 -2.2807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570283455.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:57 Heat of formation + Delta-G solvation = -55.942990 kcal Electronic energy + Delta-G solvation = -33659.174162 eV Core-core repulsion = 29631.504695 eV Total energy + Delta-G solvation = -4027.669467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.33708 -40.18875 -38.46991 -37.16424 -35.57629 -35.39539 -33.85327 -32.71501 -31.20151 -30.25828 -30.06772 -27.81377 -26.80190 -26.50718 -25.54725 -23.52320 -23.09899 -22.21197 -21.59999 -20.19984 -19.48706 -19.16753 -18.46366 -17.90819 -17.51253 -17.07396 -16.63453 -16.24276 -16.04057 -15.79457 -15.40785 -15.32329 -15.05396 -14.78249 -14.70780 -14.58847 -14.08430 -13.95134 -13.67062 -13.45988 -13.38681 -13.26776 -13.07630 -13.01708 -12.84985 -12.75992 -12.62229 -12.54064 -12.17789 -12.11145 -12.00622 -11.92394 -11.85362 -11.71007 -11.62298 -11.52152 -11.46611 -11.23946 -10.96756 -10.71378 -10.54560 -9.59772 -9.10510 -8.85063 -7.76379 -5.00866 1.46764 1.47848 1.51152 1.56493 2.01604 2.65887 2.93922 3.36081 3.44012 3.63871 3.68609 3.70860 3.82868 3.91221 4.09577 4.11304 4.16520 4.17784 4.26625 4.29756 4.42839 4.48274 4.49428 4.55776 4.57376 4.62530 4.66320 4.74793 4.79446 4.80894 4.87310 4.91000 4.92852 4.94966 5.00610 5.01120 5.04863 5.07421 5.10066 5.22498 5.30455 5.33300 5.41000 5.55939 5.58531 5.70163 5.88159 5.94274 6.04696 6.42421 6.46173 7.13270 7.16876 7.52157 8.22911 8.46696 9.47810 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.004360 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.084726 B = 6420.044549 C = 7574.822008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.028 3.972 3 C -0.158 4.158 4 N -0.491 5.491 5 C 0.040 3.960 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.051 3.949 9 H 0.121 0.879 10 C 0.516 3.484 11 O -0.579 6.579 12 N -0.594 5.594 13 C 0.106 3.894 14 C -0.124 4.124 15 C -0.109 4.109 16 C 0.176 3.824 17 C 0.075 3.925 18 O -0.563 6.563 19 N -0.713 5.713 20 C -0.172 4.172 21 H 0.094 0.906 22 C -0.095 4.095 23 N -0.982 5.982 24 Si 0.957 3.043 25 H -0.295 1.295 26 H -0.309 1.309 27 H -0.274 1.274 28 C 0.121 3.879 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.022 0.978 49 H 0.067 0.933 50 H 0.373 0.627 51 H 0.363 0.637 52 H 0.238 0.762 53 H 0.102 0.898 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 12.773 5.404 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 C -0.215 4.215 4 N -0.217 5.217 5 C -0.087 4.087 6 C -0.154 4.154 7 C -0.170 4.170 8 C -0.059 4.059 9 H 0.138 0.862 10 C 0.305 3.695 11 O -0.459 6.459 12 N -0.325 5.325 13 C -0.015 4.015 14 C -0.162 4.162 15 C -0.149 4.149 16 C 0.085 3.915 17 C -0.005 4.005 18 O -0.369 6.369 19 N -0.351 5.351 20 C -0.304 4.304 21 H 0.112 0.888 22 C -0.285 4.285 23 N -0.636 5.636 24 Si 0.789 3.211 25 H -0.223 1.223 26 H -0.237 1.237 27 H -0.199 1.199 28 C -0.002 4.002 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.040 0.960 49 H 0.085 0.915 50 H 0.221 0.779 51 H 0.194 0.806 52 H 0.047 0.953 53 H 0.120 0.880 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.719 12.638 5.862 20.266 hybrid contribution 1.632 -1.533 -1.668 2.792 sum -13.087 11.104 4.194 17.668 Atomic orbital electron populations 1.21813 0.92801 1.02084 1.02570 1.22482 0.97089 0.95947 0.92435 1.22175 1.02820 0.94613 1.01936 1.64330 1.00711 1.19423 1.37206 1.23174 0.98222 0.87534 0.99777 1.22744 0.91971 0.99657 1.01003 1.22722 1.00313 0.93179 1.00760 1.22801 0.91237 0.97474 0.94420 0.86197 1.21086 0.78486 0.78187 0.91697 1.90567 1.59555 1.58713 1.37093 1.48104 1.41002 1.34197 1.09220 1.22104 0.95316 0.98229 0.85886 1.21741 0.94680 1.01404 0.98402 1.21766 1.00339 0.98112 0.94656 1.20375 0.91360 0.85938 0.93803 1.22628 0.81974 0.98463 0.97448 1.86801 1.18193 1.86559 1.45342 1.42528 1.04743 1.02504 1.85302 1.19787 0.85333 0.91969 1.33319 0.88805 1.25367 1.00050 0.96412 1.06647 1.69857 1.33329 0.98757 1.61698 0.85334 0.82539 0.76040 0.77156 1.22276 1.23717 1.19878 1.21609 0.91297 1.01076 0.86214 0.91084 0.91919 0.92613 0.92771 0.90918 0.91242 0.92711 0.87519 0.94531 0.88546 0.89839 0.93950 0.90558 0.88487 0.88176 0.94203 0.89296 0.93475 0.90130 0.96008 0.91475 0.77910 0.80584 0.95294 0.87990 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.90 71.98 0.64 -2.11 16 2 C 0.03 0.74 2.05 44.92 0.09 0.83 16 3 C -0.16 -3.65 8.87 71.98 0.64 -3.01 16 4 N -0.49 -12.41 5.03 -839.83 -4.22 -16.64 16 5 C 0.04 0.92 5.32 86.77 0.46 1.38 16 6 C -0.12 -2.65 7.08 32.07 0.23 -2.43 16 7 C -0.13 -4.12 6.46 31.86 0.21 -3.92 16 8 C 0.05 1.50 3.25 44.51 0.14 1.64 16 9 H 0.12 3.11 5.15 -2.39 -0.01 3.10 16 10 C 0.52 17.88 3.72 87.66 0.33 18.21 16 11 O -0.58 -24.60 13.25 -3.04 -0.04 -24.64 16 12 N -0.59 -18.28 1.82 -818.71 -1.49 -19.77 16 13 C 0.11 2.56 5.28 86.36 0.46 3.02 16 14 C -0.12 -3.67 5.93 30.67 0.18 -3.48 16 15 C -0.11 -3.44 4.42 30.62 0.14 -3.30 16 16 C 0.18 6.40 0.68 3.68 0.00 6.40 16 17 C 0.08 2.48 6.09 71.98 0.44 2.92 16 18 O -0.56 -20.42 9.93 -148.98 -1.48 -21.90 16 19 N -0.71 -34.96 4.22 -302.99 -1.28 -36.24 16 20 C -0.17 -9.37 8.14 84.03 0.68 -8.69 16 21 H 0.09 5.06 5.29 -2.91 -0.02 5.04 16 22 C -0.10 -5.62 5.50 84.86 0.47 -5.15 16 23 N -0.98 -62.63 13.06 21.65 0.28 -62.35 16 24 Si 0.96 48.60 29.55 68.60 2.03 50.62 16 25 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 26 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 27 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 28 C 0.12 3.93 5.13 86.35 0.44 4.37 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.10 6.57 -2.39 -0.02 1.09 16 32 H 0.05 1.88 4.96 -2.67 -0.01 1.86 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.70 3.03 -2.39 -0.01 1.69 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 0.94 7.13 -2.39 -0.02 0.92 16 38 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.66 7.48 -2.39 -0.02 1.64 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.10 2.13 5.05 -2.38 -0.01 2.12 16 43 H 0.10 1.79 8.01 -2.39 -0.02 1.77 16 44 H 0.04 1.59 7.53 -2.39 -0.02 1.57 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.05 1.75 6.96 -2.38 -0.02 1.73 16 47 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.37 9.80 9.12 -74.05 -0.68 9.13 16 51 H 0.36 20.54 7.65 -92.71 -0.71 19.83 16 52 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 53 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 54 H 0.06 2.35 7.04 -2.39 -0.02 2.33 16 Total: -1.00 -75.17 390.11 -1.12 -76.29 By element: Atomic # 1 Polarization: 48.40 SS G_CDS: -0.47 Total: 47.93 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.54 Total: 6.68 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -6.71 Total: -134.99 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.52 Total: -46.54 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.62 kcal Total: -75.17 -1.12 -76.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570283455.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.349 kcal (2) G-P(sol) polarization free energy of solvation -75.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds