Wall clock time and date at job start Tue Mar 31 2020 23:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46960 * 2 1 4 4 H 1.08999 * 109.46768 * 55.00144 * 3 2 1 5 5 C 1.53001 * 109.46991 * 295.00285 * 3 2 1 6 6 C 1.53000 * 109.47131 * 175.00395 * 3 2 1 7 7 H 1.08994 * 109.47342 * 59.99479 * 6 3 2 8 8 C 1.53000 * 109.47131 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.46769 * 299.99994 * 6 3 2 10 10 O 1.21280 * 120.00269 * 0.02562 * 9 6 3 11 11 N 1.34781 * 119.99932 * 179.97438 * 9 6 3 12 12 C 1.46500 * 119.99985 * 179.97438 * 11 9 6 13 13 H 1.09002 * 112.85221 * 334.67013 * 12 11 9 14 14 C 1.53785 * 113.68813 * 105.94035 * 12 11 9 15 15 C 1.53777 * 87.08241 * 89.12417 * 14 12 11 16 16 H 1.08998 * 113.69520 * 270.87557 * 15 14 12 17 17 C 1.52999 * 113.61195 * 139.97738 * 15 14 12 18 18 N 1.46903 * 109.46734 * 87.50708 * 17 15 14 19 19 C 1.46903 * 110.99652 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.46940 * 180.02562 * 19 18 17 21 21 O 1.21297 * 120.00026 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00125 * 180.02562 * 20 19 18 23 23 C 1.37097 * 120.00183 * 179.97438 * 22 20 19 24 24 H 1.07998 * 119.99806 * 359.97438 * 23 22 20 25 25 C 1.38953 * 120.00053 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99775 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00047 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47210 * 89.99395 * 27 25 23 29 29 H 1.48492 * 109.47165 * 209.99764 * 27 25 23 30 30 H 1.48505 * 109.47133 * 329.99897 * 27 25 23 31 31 C 1.53781 * 113.61339 * 203.47543 * 12 11 9 32 32 H 1.08998 * 109.47186 * 299.99407 * 1 2 3 33 33 H 1.09000 * 109.47377 * 59.99784 * 1 2 3 34 34 H 1.09008 * 109.47179 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46728 * 240.00623 * 2 1 3 36 36 H 1.09000 * 109.47377 * 120.00216 * 2 1 3 37 37 H 1.09001 * 109.47367 * 60.00298 * 5 3 2 38 38 H 1.09008 * 109.46842 * 180.02562 * 5 3 2 39 39 H 1.08999 * 109.47250 * 299.99564 * 5 3 2 40 40 H 1.09003 * 109.46984 * 60.00200 * 8 6 3 41 41 H 1.09001 * 109.46995 * 179.97438 * 8 6 3 42 42 H 1.08993 * 109.47024 * 299.99935 * 8 6 3 43 43 H 0.96998 * 119.99866 * 0.02562 * 11 9 6 44 44 H 1.08999 * 113.61060 * 203.67840 * 14 12 11 45 45 H 1.08997 * 113.61198 * 334.57634 * 14 12 11 46 46 H 1.09005 * 109.47016 * 207.50089 * 17 15 14 47 47 H 1.08994 * 109.47189 * 327.50593 * 17 15 14 48 48 H 1.00900 * 110.99982 * 56.04707 * 18 17 15 49 49 H 1.08998 * 109.47087 * 299.99800 * 19 18 17 50 50 H 1.08995 * 109.47224 * 60.00143 * 19 18 17 51 51 H 0.97002 * 120.00073 * 0.02562 * 22 20 19 52 52 H 0.97000 * 119.99304 * 180.02562 * 26 25 23 53 53 H 1.09000 * 113.61578 * 25.34726 * 31 12 11 54 54 H 1.08997 * 113.61673 * 156.25695 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1265 -1.3073 6 6 3.5648 1.4444 0.1256 7 1 3.9994 0.9053 -0.7161 8 6 4.0747 2.8869 0.1263 9 6 3.9635 0.7706 1.4133 10 8 3.1119 0.3317 2.1570 11 7 5.2665 0.6548 1.7380 12 6 5.6540 0.0003 2.9900 13 1 4.8742 0.0454 3.7503 14 6 6.2437 -1.4066 2.7950 15 6 7.6169 -0.7272 2.6631 16 1 7.8671 -0.4397 1.6419 17 6 8.7466 -1.4882 3.3599 18 7 9.3082 -2.4837 2.4371 19 6 10.3985 -3.2351 3.0732 20 6 10.9489 -4.2440 2.0984 21 8 10.4787 -4.3291 0.9835 22 7 11.9628 -5.0524 2.4656 23 6 12.4631 -5.9706 1.5790 24 1 12.0444 -6.0463 0.5863 25 6 13.5081 -6.8044 1.9578 26 7 14.0171 -6.7125 3.1658 27 14 14.1893 -8.0559 0.7499 28 1 15.2923 -7.4406 -0.0311 29 1 14.7061 -9.2321 1.4946 30 1 13.1108 -8.4899 -0.1742 31 6 7.0402 0.4245 3.5034 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 0.5488 2.1253 -1.3969 38 1 1.9988 3.1541 -1.3075 39 1 2.0697 1.5876 -2.1492 40 1 3.6401 3.4255 0.9684 41 1 5.1610 2.8882 0.2162 42 1 3.7863 3.3746 -0.8048 43 1 5.9475 1.0055 1.1430 44 1 6.1541 -2.0433 3.6751 45 1 5.9096 -1.8971 1.8807 46 1 9.5269 -0.7878 3.6576 47 1 8.3543 -1.9921 4.2432 48 1 9.6203 -2.0485 1.5819 49 1 11.1902 -2.5465 3.3686 50 1 10.0182 -3.7511 3.9547 51 1 12.3381 -4.9851 3.3576 52 1 14.7468 -7.2944 3.4301 53 1 7.3492 1.4121 3.1611 54 1 7.1686 0.2883 4.5772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571177340.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:54 Heat of formation + Delta-G solvation = -100.277336 kcal Electronic energy + Delta-G solvation = -29070.042711 eV Core-core repulsion = 25040.450763 eV Total energy + Delta-G solvation = -4029.591948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.50446 -40.23371 -39.79528 -37.43591 -36.51271 -35.77418 -34.50976 -33.27365 -32.85682 -29.91672 -29.30190 -27.30280 -26.72430 -26.57836 -25.36702 -23.98672 -22.90947 -21.78408 -21.14818 -20.60303 -20.17107 -19.82938 -18.23842 -17.79693 -17.10702 -16.95289 -16.49249 -16.24044 -16.05249 -15.99066 -15.89276 -15.43802 -15.21250 -15.15419 -14.60114 -14.56082 -14.28747 -14.13419 -13.63499 -13.53814 -13.51078 -13.37126 -13.27207 -13.08952 -12.99062 -12.86757 -12.58994 -12.54037 -12.43627 -12.42598 -12.35070 -12.13041 -11.81527 -11.59868 -11.51302 -11.46160 -11.36465 -11.29598 -11.13040 -10.46076 -10.33902 -10.02106 -9.95116 -9.25330 -8.47266 -5.96122 1.37645 1.41485 1.54350 1.66374 2.04860 2.20978 2.28921 2.93436 3.20040 3.48076 3.60223 3.65502 3.79546 3.82394 3.88885 3.95242 4.04085 4.20587 4.32006 4.40663 4.44439 4.46350 4.54523 4.55315 4.58339 4.63740 4.66075 4.74562 4.75663 4.79206 4.86623 4.88313 4.92878 4.97009 5.02920 5.10332 5.13862 5.15222 5.20532 5.23618 5.28925 5.33293 5.38724 5.40344 5.53479 5.63421 5.73792 5.90635 6.13339 6.45828 6.59741 6.59856 7.12040 7.31678 7.55780 8.11194 8.70086 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.001599 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.418803 B =17509.236030 C =18246.169126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C -0.068 4.068 4 H 0.060 0.940 5 C -0.147 4.147 6 C -0.105 4.105 7 H 0.109 0.891 8 C -0.142 4.142 9 C 0.513 3.487 10 O -0.574 6.574 11 N -0.703 5.703 12 C 0.117 3.883 13 H 0.085 0.915 14 C -0.141 4.141 15 C -0.099 4.099 16 H 0.091 0.909 17 C 0.070 3.930 18 N -0.684 5.684 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.270 1.270 29 H -0.270 1.270 30 H -0.274 1.274 31 C -0.119 4.119 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.412 0.588 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.343 0.657 49 H 0.067 0.933 50 H 0.101 0.899 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.090 0.910 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.220 23.150 -1.772 30.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.087 4.087 4 H 0.078 0.922 5 C -0.204 4.204 6 C -0.126 4.126 7 H 0.127 0.873 8 C -0.199 4.199 9 C 0.302 3.698 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.011 3.989 13 H 0.103 0.897 14 C -0.180 4.180 15 C -0.118 4.118 16 H 0.110 0.890 17 C -0.058 4.058 18 N -0.317 5.317 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.211 5.211 23 C -0.465 4.465 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.195 1.195 29 H -0.195 1.195 30 H -0.199 1.199 31 C -0.157 4.157 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.249 0.751 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.162 0.838 49 H 0.085 0.915 50 H 0.119 0.881 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.109 0.891 54 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.448 22.206 -1.728 30.236 hybrid contribution 1.614 -0.405 -0.144 1.670 sum -18.834 21.801 -1.871 28.871 Atomic orbital electron populations 1.21743 0.95514 1.01334 1.01747 1.21803 0.96582 0.97001 1.01843 1.20911 0.92513 0.96259 0.99018 0.92171 1.21935 1.01828 1.00869 0.95726 1.21442 0.97892 0.98709 0.94533 0.87339 1.21842 1.01779 0.92641 1.03648 1.21240 0.82074 0.78202 0.88329 1.90631 1.50817 1.50295 1.53607 1.45684 1.07559 1.59361 1.22776 1.21806 0.97087 0.93203 0.86800 0.89733 1.23386 0.96271 0.96453 1.01864 1.22515 0.93322 0.96070 0.99889 0.89046 1.22068 0.96268 0.92283 0.95221 1.60076 1.34155 1.29743 1.07675 1.21525 0.93871 0.95303 0.96026 1.20940 0.82072 0.85170 0.89416 1.90487 1.62598 1.73600 1.24399 1.41939 1.31147 1.32492 1.15475 1.19675 1.15980 1.13975 0.96902 0.90377 1.26043 0.96551 1.00001 0.98647 1.69672 1.26624 1.40574 1.19179 0.84922 0.78270 0.77429 0.77676 1.19490 1.19522 1.19912 1.23260 0.92540 0.98635 1.01310 0.93518 0.91514 0.93314 0.92571 0.92146 0.92069 0.91095 0.92113 0.92786 0.90857 0.89472 0.75084 0.89574 0.93343 0.93755 0.90630 0.83847 0.91522 0.88125 0.76962 0.91284 0.89117 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.67 71.98 0.70 -1.67 16 2 C -0.13 -2.49 5.14 30.59 0.16 -2.33 16 3 C -0.07 -1.00 1.61 -10.79 -0.02 -1.02 16 4 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 5 C -0.15 -1.44 8.60 71.98 0.62 -0.82 16 6 C -0.10 -1.35 2.32 -11.54 -0.03 -1.38 16 7 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 8 C -0.14 -1.13 8.74 71.98 0.63 -0.50 16 9 C 0.51 9.86 6.83 87.66 0.60 10.46 16 10 O -0.57 -15.78 13.29 -3.03 -0.04 -15.82 16 11 N -0.70 -10.80 5.16 -440.02 -2.27 -13.07 16 12 C 0.12 2.03 4.30 45.52 0.20 2.22 16 13 H 0.08 1.76 7.50 -2.39 -0.02 1.75 16 14 C -0.14 -2.94 7.43 31.12 0.23 -2.71 16 15 C -0.10 -1.74 3.79 -10.26 -0.04 -1.78 16 16 H 0.09 1.59 8.13 -2.39 -0.02 1.57 16 17 C 0.07 1.48 5.52 86.30 0.48 1.96 16 18 N -0.68 -21.00 6.13 -517.93 -3.17 -24.18 16 19 C 0.07 2.22 6.17 85.56 0.53 2.74 16 20 C 0.44 20.92 7.82 87.66 0.69 21.60 16 21 O -0.62 -34.94 15.78 -3.08 -0.05 -34.99 16 22 N -0.57 -29.63 5.29 -306.98 -1.62 -31.25 16 23 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 24 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 25 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 26 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 27 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 31 C -0.12 -1.49 7.38 31.12 0.23 -1.26 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.86 6.56 -2.39 -0.02 0.84 16 34 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.51 5.41 -2.39 -0.01 1.49 16 37 H 0.06 0.59 6.56 -2.39 -0.02 0.58 16 38 H 0.07 0.51 6.43 -2.38 -0.02 0.49 16 39 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.40 7.56 -2.39 -0.02 0.38 16 42 H 0.09 0.46 6.43 -2.39 -0.02 0.44 16 43 H 0.41 4.21 8.12 -92.71 -0.75 3.46 16 44 H 0.09 1.85 7.90 -2.39 -0.02 1.83 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.08 1.57 7.84 -2.39 -0.02 1.55 16 48 H 0.34 10.96 8.42 -89.69 -0.76 10.20 16 49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 51 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 52 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 53 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -73.03 426.08 0.07 -72.96 By element: Atomic # 1 Polarization: 45.11 SS G_CDS: -1.33 Total: 43.78 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.24 Total: 6.88 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -6.78 Total: -117.90 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.09 Total: -50.82 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.03 0.07 -72.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571177340.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.314 kcal (2) G-P(sol) polarization free energy of solvation -73.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds