Wall clock time and date at job start Tue Mar 31 2020 23:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.52997 * 109.46817 * 64.99892 * 3 2 1 6 6 C 1.53000 * 109.47233 * 184.99697 * 3 2 1 7 7 H 1.08992 * 109.47399 * 300.00166 * 6 3 2 8 8 C 1.53002 * 109.47233 * 179.97438 * 6 3 2 9 9 C 1.50706 * 109.46735 * 60.00584 * 6 3 2 10 10 O 1.21273 * 120.00140 * 359.97438 * 9 6 3 11 11 N 1.34779 * 119.99767 * 180.02562 * 9 6 3 12 12 C 1.46496 * 120.00054 * 179.97438 * 11 9 6 13 13 H 1.08998 * 112.84922 * 334.67089 * 12 11 9 14 14 C 1.53787 * 113.61263 * 105.85959 * 12 11 9 15 15 C 1.54053 * 86.98328 * 89.16303 * 14 12 11 16 16 H 1.09003 * 113.69314 * 270.87529 * 15 14 12 17 17 C 1.53006 * 113.62113 * 139.97569 * 15 14 12 18 18 N 1.46900 * 109.46648 * 87.50446 * 17 15 14 19 19 C 1.46904 * 110.99798 * 180.02562 * 18 17 15 20 20 C 1.50694 * 109.47122 * 180.02562 * 19 18 17 21 21 O 1.21290 * 120.00269 * 0.02562 * 20 19 18 22 22 N 1.34778 * 120.00096 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00189 * 179.97438 * 22 20 19 24 24 H 1.07996 * 119.99909 * 359.97438 * 23 22 20 25 25 C 1.38955 * 119.99847 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00130 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99609 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47258 * 90.00209 * 27 25 23 29 29 H 1.48504 * 109.46753 * 209.99493 * 27 25 23 30 30 H 1.48498 * 109.47522 * 329.99713 * 27 25 23 31 31 C 1.53780 * 113.61591 * 203.47089 * 12 11 9 32 32 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 34 34 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 35 35 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 36 36 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 37 37 H 1.08998 * 109.47533 * 179.97438 * 5 3 2 38 38 H 1.08996 * 109.47853 * 300.00202 * 5 3 2 39 39 H 1.09002 * 109.47153 * 60.00231 * 5 3 2 40 40 H 1.08993 * 109.47662 * 180.02562 * 8 6 3 41 41 H 1.09002 * 109.47075 * 300.00932 * 8 6 3 42 42 H 1.09000 * 109.46986 * 60.00203 * 8 6 3 43 43 H 0.97005 * 119.99680 * 359.97438 * 11 9 6 44 44 H 1.08997 * 113.61269 * 203.66320 * 14 12 11 45 45 H 1.09001 * 113.61369 * 334.57294 * 14 12 11 46 46 H 1.08997 * 109.46925 * 207.50794 * 17 15 14 47 47 H 1.08998 * 109.46949 * 327.50969 * 17 15 14 48 48 H 1.00900 * 111.00046 * 56.04929 * 18 17 15 49 49 H 1.08997 * 109.46951 * 300.00143 * 19 18 17 50 50 H 1.09001 * 109.47074 * 59.99785 * 19 18 17 51 51 H 0.97000 * 119.99819 * 0.02562 * 22 20 19 52 52 H 0.96999 * 119.99575 * 179.97438 * 26 25 23 53 53 H 1.08997 * 113.61346 * 25.42854 * 31 12 11 54 54 H 1.08995 * 113.61558 * 156.25350 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1256 7 1 3.9995 0.9052 0.7161 8 6 4.0749 2.8868 -0.1263 9 6 3.9635 0.7705 -1.4135 10 8 3.1120 0.3318 -2.1571 11 7 5.2665 0.6547 -1.7381 12 6 5.6541 -0.0007 -2.9897 13 1 4.9083 -0.7126 -3.3432 14 6 6.1343 0.9780 -4.0744 15 6 7.5480 0.8090 -3.4860 16 1 7.7789 1.5174 -2.6904 17 6 8.6478 0.7276 -4.5467 18 7 9.1038 2.0826 -4.8841 19 6 10.1618 2.0436 -5.9025 20 6 10.6037 3.4485 -6.2218 21 8 10.0883 4.3897 -5.6564 22 7 11.5723 3.6592 -7.1350 23 6 11.9739 4.9373 -7.4259 24 1 11.5138 5.7754 -6.9236 25 6 12.9722 5.1545 -8.3678 26 7 13.5317 4.1347 -8.9793 27 14 13.5198 6.8960 -8.7636 28 1 14.6330 7.2823 -7.8598 29 1 13.9816 6.9612 -10.1735 30 1 12.3804 7.8288 -8.5722 31 6 7.0846 -0.5646 -2.9724 32 1 -0.3633 -1.0275 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5140 -0.8900 35 1 1.8933 -0.5139 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 1.9990 3.1540 1.3077 38 1 0.5490 2.1253 1.3970 39 1 2.0699 1.5874 2.1492 40 1 5.1612 2.8881 -0.2162 41 1 3.6402 3.4255 -0.9683 42 1 3.7866 3.3745 0.8049 43 1 5.9476 1.0053 -1.1430 44 1 6.0340 0.5898 -5.0880 45 1 5.7313 1.9846 -3.9637 46 1 9.4854 0.1486 -4.1577 47 1 8.2552 0.2432 -5.4407 48 1 9.4127 2.5759 -4.0599 49 1 11.0101 1.4737 -5.5234 50 1 9.7794 1.5684 -6.8058 51 1 11.9848 2.9065 -7.5869 52 1 14.2282 4.2864 -9.6370 53 1 7.4482 -0.8022 -1.9728 54 1 7.2433 -1.3746 -3.6843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571177342.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:58 Heat of formation + Delta-G solvation = -100.230592 kcal Electronic energy + Delta-G solvation = -29071.062738 eV Core-core repulsion = 25041.472817 eV Total energy + Delta-G solvation = -4029.589921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50251 -40.22928 -39.78446 -37.43362 -36.51051 -35.77255 -34.50243 -33.27195 -32.85797 -29.91407 -29.30343 -27.30580 -26.71520 -26.58730 -25.36376 -23.98467 -22.90719 -21.77711 -21.14606 -20.59529 -20.17634 -19.82825 -18.25733 -17.78635 -17.07414 -16.94978 -16.49896 -16.19087 -16.09731 -16.04596 -15.85174 -15.43131 -15.23080 -15.10887 -14.66912 -14.41889 -14.36752 -14.14335 -13.63750 -13.58540 -13.50972 -13.33600 -13.27268 -13.10349 -12.93502 -12.88328 -12.61201 -12.51864 -12.44465 -12.42478 -12.35909 -12.12888 -11.82045 -11.56566 -11.51093 -11.46665 -11.37116 -11.28861 -11.12610 -10.48547 -10.33276 -10.01914 -9.93594 -9.24951 -8.47111 -5.95985 1.37797 1.41645 1.54498 1.66035 2.05110 2.21285 2.29089 2.93634 3.20232 3.48280 3.59985 3.64992 3.77991 3.83141 3.91813 3.93855 4.04157 4.22200 4.32179 4.40583 4.42668 4.46464 4.54787 4.55475 4.58388 4.63314 4.66220 4.75202 4.76463 4.78708 4.86676 4.88408 4.92844 4.95580 5.01970 5.11275 5.14132 5.15351 5.20801 5.23650 5.29344 5.33555 5.38977 5.40484 5.54018 5.64149 5.74266 5.90829 6.13572 6.46254 6.59888 6.59950 7.12218 7.31734 7.55976 8.11394 8.70261 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.001565 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.629627 B =17890.288507 C =18691.667559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.071 4.071 4 H 0.052 0.948 5 C -0.146 4.146 6 C -0.101 4.101 7 H 0.119 0.881 8 C -0.145 4.145 9 C 0.513 3.487 10 O -0.574 6.574 11 N -0.703 5.703 12 C 0.117 3.883 13 H 0.085 0.915 14 C -0.141 4.141 15 C -0.099 4.099 16 H 0.092 0.908 17 C 0.070 3.930 18 N -0.684 5.684 19 C 0.065 3.935 20 C 0.437 3.563 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.270 1.270 29 H -0.271 1.271 30 H -0.274 1.274 31 C -0.119 4.119 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.412 0.588 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.343 0.657 49 H 0.067 0.933 50 H 0.101 0.899 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.090 0.910 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.584 -12.850 21.089 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.203 4.203 6 C -0.122 4.122 7 H 0.137 0.863 8 C -0.203 4.203 9 C 0.301 3.699 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.011 3.989 13 H 0.103 0.897 14 C -0.180 4.180 15 C -0.118 4.118 16 H 0.110 0.890 17 C -0.058 4.058 18 N -0.316 5.316 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.211 5.211 23 C -0.466 4.466 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.195 1.195 29 H -0.195 1.195 30 H -0.199 1.199 31 C -0.158 4.158 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.249 0.751 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.162 0.838 49 H 0.085 0.915 50 H 0.119 0.881 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.109 0.891 54 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.871 -12.451 20.326 30.402 hybrid contribution 1.568 0.429 -0.307 1.654 sum -17.304 -12.022 20.019 29.064 Atomic orbital electron populations 1.21752 0.95748 1.01433 1.01543 1.21778 0.96357 0.96527 1.02180 1.20928 0.92545 0.96709 0.98794 0.92970 1.21928 1.01808 1.00741 0.95868 1.21420 0.97845 0.98099 0.94816 0.86316 1.21859 1.01665 0.93359 1.03392 1.21246 0.82078 0.78195 0.88349 1.90630 1.50757 1.50172 1.53801 1.45686 1.07584 1.59641 1.22470 1.21809 0.97121 0.95090 0.84885 0.89729 1.23429 0.96384 0.99272 0.98870 1.22563 0.93464 0.98163 0.97561 0.89013 1.22065 0.96991 0.88251 0.98532 1.60061 1.39035 1.17788 1.14746 1.21523 0.94597 0.92412 0.98188 1.20936 0.81972 0.92175 0.82503 1.90484 1.59022 1.45978 1.55576 1.41939 1.33922 1.08493 1.36705 1.19679 1.19137 0.85518 1.22246 0.90371 1.26036 0.96087 1.03413 0.95642 1.69670 1.26914 1.32147 1.27329 0.84925 0.78384 0.77119 0.77883 1.19488 1.19527 1.19915 1.23254 0.92694 0.96599 1.03221 0.92916 0.91598 0.94043 0.91953 0.91785 0.91646 0.92136 0.91497 0.91120 0.93709 0.89282 0.75075 0.89608 0.93323 0.93769 0.90648 0.83832 0.91537 0.88139 0.76970 0.91284 0.89148 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.67 71.98 0.70 -1.50 16 2 C -0.13 -2.15 5.14 30.59 0.16 -1.99 16 3 C -0.07 -1.04 1.61 -10.79 -0.02 -1.06 16 4 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 5 C -0.15 -1.43 8.60 71.98 0.62 -0.81 16 6 C -0.10 -1.29 2.32 -11.54 -0.03 -1.32 16 7 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 8 C -0.15 -1.59 8.74 71.98 0.63 -0.96 16 9 C 0.51 9.83 6.83 87.66 0.60 10.43 16 10 O -0.57 -15.77 13.29 -3.01 -0.04 -15.81 16 11 N -0.70 -10.77 5.16 -440.04 -2.27 -13.04 16 12 C 0.12 2.02 4.30 45.52 0.20 2.22 16 13 H 0.08 1.76 7.50 -2.39 -0.02 1.74 16 14 C -0.14 -2.93 7.45 31.22 0.23 -2.70 16 15 C -0.10 -1.72 3.79 -10.17 -0.04 -1.76 16 16 H 0.09 1.58 8.13 -2.39 -0.02 1.56 16 17 C 0.07 1.48 5.53 86.31 0.48 1.95 16 18 N -0.68 -20.93 6.13 -517.93 -3.17 -24.10 16 19 C 0.07 2.21 6.17 85.55 0.53 2.74 16 20 C 0.44 20.90 7.82 87.65 0.69 21.58 16 21 O -0.62 -34.87 15.78 -3.06 -0.05 -34.92 16 22 N -0.57 -29.61 5.29 -306.99 -1.62 -31.23 16 23 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 24 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 26 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 27 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 30 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 31 C -0.12 -1.50 7.38 31.12 0.23 -1.27 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.78 6.56 -2.39 -0.02 0.76 16 34 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.06 1.40 5.42 -2.38 -0.01 1.39 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.55 6.43 -2.39 -0.02 0.54 16 38 H 0.06 0.59 6.57 -2.39 -0.02 0.58 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 0.64 7.56 -2.39 -0.02 0.62 16 41 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.68 6.43 -2.39 -0.02 0.66 16 43 H 0.41 4.19 8.12 -92.70 -0.75 3.44 16 44 H 0.09 1.84 7.90 -2.39 -0.02 1.82 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 1.56 7.85 -2.39 -0.02 1.54 16 48 H 0.34 10.92 8.42 -89.69 -0.76 10.17 16 49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 51 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 52 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 53 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -72.95 426.10 0.07 -72.88 By element: Atomic # 1 Polarization: 44.95 SS G_CDS: -1.33 Total: 43.62 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.25 Total: 6.94 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -6.78 Total: -117.76 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.09 Total: -50.74 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.95 0.07 -72.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571177342.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.349 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds