Wall clock time and date at job start Tue Mar 31 2020 22:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 H 1.08998 * 109.47352 * 54.99784 * 3 2 1 5 5 C 1.52997 * 109.46882 * 294.99822 * 3 2 1 6 6 C 1.50706 * 109.46874 * 175.00351 * 3 2 1 7 7 O 1.21278 * 119.99797 * 23.02420 * 6 3 2 8 8 N 1.34773 * 119.99748 * 203.03093 * 6 3 2 9 9 C 1.46931 * 120.63364 * 4.65454 * 8 6 3 10 10 C 1.52755 * 109.00982 * 233.58801 * 9 8 6 11 11 C 1.53040 * 109.38416 * 305.58872 * 10 9 8 12 12 C 1.53000 * 109.44929 * 181.25405 * 11 10 9 13 13 C 1.53004 * 109.47342 * 64.93808 * 12 11 10 14 14 N 1.46899 * 109.47237 * 179.97438 * 13 12 11 15 15 C 1.46903 * 110.99880 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47072 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00019 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00236 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00499 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99196 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99548 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00068 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47674 * 59.99584 * 23 21 19 25 25 H 1.48499 * 109.47284 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47201 * 299.99683 * 23 21 19 27 27 C 1.53034 * 109.53906 * 61.23997 * 11 10 9 28 28 C 1.46925 * 120.63126 * 184.93960 * 8 6 3 29 29 H 1.09008 * 109.46765 * 300.00054 * 1 2 3 30 30 H 1.08996 * 109.47332 * 59.99823 * 1 2 3 31 31 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47305 * 239.99981 * 2 1 3 33 33 H 1.09001 * 109.47088 * 119.99788 * 2 1 3 34 34 H 1.09009 * 109.47139 * 185.75605 * 5 3 2 35 35 H 1.08996 * 109.47373 * 305.75416 * 5 3 2 36 36 H 1.09002 * 109.47279 * 65.75631 * 5 3 2 37 37 H 1.09005 * 109.58352 * 353.41914 * 9 8 6 38 38 H 1.08996 * 109.58510 * 113.84586 * 9 8 6 39 39 H 1.08998 * 109.56933 * 185.54985 * 10 9 8 40 40 H 1.09007 * 109.36184 * 65.49734 * 10 9 8 41 41 H 1.09004 * 109.45767 * 301.21419 * 11 10 9 42 42 H 1.09004 * 109.47059 * 184.93640 * 12 11 10 43 43 H 1.09000 * 109.47222 * 304.93353 * 12 11 10 44 44 H 1.09004 * 109.46906 * 299.99925 * 13 12 11 45 45 H 1.09005 * 109.46884 * 59.99458 * 13 12 11 46 46 H 1.00903 * 110.99752 * 56.04665 * 14 13 12 47 47 H 1.09000 * 109.47227 * 299.99983 * 15 14 13 48 48 H 1.09005 * 109.46679 * 59.99968 * 15 14 13 49 49 H 0.96998 * 119.99811 * 0.02562 * 18 16 15 50 50 H 0.96995 * 119.99411 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.49651 * 178.68738 * 27 11 10 52 52 H 1.08998 * 109.52448 * 58.60436 * 27 11 10 53 53 H 1.09001 * 109.58739 * 246.15143 * 28 8 6 54 54 H 1.08997 * 109.58287 * 6.43385 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4444 0.1238 7 8 4.1788 0.4669 -0.2076 8 7 4.1772 2.5322 0.6028 9 6 3.4152 3.6844 1.1032 10 6 3.8953 4.9465 0.3891 11 6 5.4115 5.0766 0.5519 12 6 5.8897 6.3568 -0.1362 13 6 5.2984 7.5725 0.5803 14 7 5.7581 8.8015 -0.0800 15 6 5.2083 9.9921 0.5822 16 6 5.7001 11.2305 -0.1216 17 8 6.4358 11.1311 -1.0808 18 7 5.3217 12.4484 0.3141 19 6 5.7696 13.5751 -0.3259 20 1 6.4253 13.4866 -1.1795 21 6 5.3799 14.8308 0.1236 22 7 4.5816 14.9383 1.1619 23 14 5.9895 16.3658 -0.7488 24 1 5.5467 16.3388 -2.1660 25 1 5.4343 17.5694 -0.0791 26 1 7.4729 16.4099 -0.6946 27 6 6.1002 3.8676 -0.0851 28 6 5.6451 2.5909 0.6288 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0842 3.1188 -1.3525 35 1 1.9832 1.5315 -2.1516 36 1 0.5497 2.2167 -1.3493 37 1 2.3540 3.5349 0.9042 38 1 3.5765 3.7911 2.1759 39 1 3.4067 5.8193 0.8223 40 1 3.6477 4.8788 -0.6703 41 1 5.6605 5.1196 1.6122 42 1 6.9780 6.4056 -0.0968 43 1 5.5637 6.3538 -1.1763 44 1 4.2101 7.5236 0.5409 45 1 5.6245 7.5753 1.6204 46 1 5.5244 8.7938 -1.0615 47 1 4.1195 9.9600 0.5420 48 1 5.5331 10.0117 1.6226 49 1 4.7331 12.5279 1.0809 50 1 4.3098 15.8149 1.4759 51 1 7.1809 3.9723 0.0106 52 1 5.8323 3.8097 -1.1401 53 1 5.9919 2.6066 1.6621 54 1 6.0547 1.7188 0.1191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666190859.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:44 Heat of formation + Delta-G solvation = -123.088170 kcal Electronic energy + Delta-G solvation = -29281.830202 eV Core-core repulsion = 25251.249102 eV Total energy + Delta-G solvation = -4030.581100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.48348 -40.15804 -39.15501 -37.05527 -36.45817 -35.91515 -34.67146 -33.25738 -32.30787 -30.87918 -30.35472 -28.14296 -26.64726 -25.92250 -24.68422 -24.29740 -23.00070 -21.96069 -21.19271 -20.89839 -19.89169 -19.61845 -18.33143 -17.80539 -17.08991 -16.98536 -16.55292 -16.38014 -16.05633 -15.85919 -15.64997 -15.32973 -15.29919 -15.09719 -14.80017 -14.62969 -14.23693 -14.19772 -13.99033 -13.69610 -13.50489 -13.37709 -13.31704 -13.07844 -13.01366 -12.85332 -12.61523 -12.56751 -12.47482 -12.42687 -12.16884 -12.12277 -12.01123 -11.79568 -11.69056 -11.59278 -11.49930 -11.31217 -11.22543 -10.62187 -10.33614 -10.01185 -9.65804 -9.25349 -8.46180 -5.95029 1.40439 1.42536 1.53323 1.58439 2.01265 2.06081 2.29978 2.95513 3.21161 3.46291 3.53422 3.77436 3.78712 3.85224 3.92577 3.99274 4.13118 4.24613 4.29860 4.31967 4.37312 4.45487 4.49337 4.53528 4.55579 4.58919 4.59730 4.65272 4.69987 4.73066 4.81552 4.85701 4.90145 4.96221 4.97635 5.01668 5.08650 5.12753 5.17467 5.18328 5.20336 5.34293 5.38105 5.41250 5.46706 5.54530 5.60410 5.92239 6.15514 6.40438 6.45081 6.60996 7.13086 7.15070 7.56906 8.12546 8.70889 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.001543 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.386696 B =18142.188627 C =18802.691406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.107 4.107 4 H 0.118 0.882 5 C -0.140 4.140 6 C 0.511 3.489 7 O -0.591 6.591 8 N -0.609 5.609 9 C 0.101 3.899 10 C -0.131 4.131 11 C -0.077 4.077 12 C -0.104 4.104 13 C 0.062 3.938 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.122 4.122 28 C 0.110 3.890 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.342 0.658 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.081 0.919 52 H 0.054 0.946 53 H 0.078 0.922 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.382 -26.883 3.903 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.128 4.128 4 H 0.136 0.864 5 C -0.197 4.197 6 C 0.300 3.700 7 O -0.472 6.472 8 N -0.341 5.341 9 C -0.020 4.020 10 C -0.169 4.169 11 C -0.096 4.096 12 C -0.142 4.142 13 C -0.067 4.067 14 N -0.322 5.322 15 C -0.066 4.066 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.467 4.467 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.198 1.198 27 C -0.160 4.160 28 C -0.012 4.012 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.160 0.840 47 H 0.086 0.914 48 H 0.121 0.879 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.073 0.927 53 H 0.097 0.903 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.052 -27.254 3.562 28.938 hybrid contribution -0.448 0.870 -0.438 1.072 sum -9.500 -26.384 3.124 28.215 Atomic orbital electron populations 1.21804 0.93435 1.02427 1.02897 1.21343 0.97104 0.94094 1.01799 1.21438 0.89660 0.99546 1.02124 0.86434 1.21790 1.03463 1.00050 0.94428 1.21339 0.91553 0.81672 0.75389 1.90655 1.69526 1.35229 1.51788 1.48286 1.07132 1.16979 1.61735 1.21979 0.96950 0.83947 0.99149 1.21979 0.95550 0.97987 1.01348 1.21044 0.95186 0.92826 1.00529 1.21497 1.00831 0.92772 0.99112 1.22119 0.97868 0.87851 0.98837 1.60085 1.63909 1.01024 1.07167 1.21521 0.98115 0.87964 0.99003 1.20971 0.84547 0.85536 0.86660 1.90488 1.41681 1.87263 1.31800 1.41926 1.44456 1.04640 1.29955 1.19641 1.28814 0.84919 1.13310 0.90416 1.26022 0.96483 1.01542 0.97073 1.69660 1.34679 1.26507 1.25121 0.84994 0.78466 0.76717 0.78187 1.19703 1.19402 1.19837 1.21885 1.01055 0.93609 0.99432 1.21583 0.79761 0.98490 1.01404 0.91477 0.91560 0.92339 0.92979 0.92873 0.91776 0.93459 0.89020 0.87602 0.89678 0.88897 0.92003 0.89791 0.92101 0.92594 0.93556 0.90532 0.83983 0.91435 0.87876 0.76911 0.91266 0.90061 0.92727 0.90333 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 71.98 0.70 -0.51 16 2 C -0.11 -1.40 4.82 30.60 0.15 -1.25 16 3 C -0.11 -1.27 1.87 -11.54 -0.02 -1.29 16 4 H 0.12 0.81 6.39 -2.39 -0.02 0.79 16 5 C -0.14 -1.41 8.60 71.98 0.62 -0.79 16 6 C 0.51 9.66 6.82 87.66 0.60 10.26 16 7 O -0.59 -16.51 15.60 -3.02 -0.05 -16.56 16 8 N -0.61 -9.03 2.98 -819.74 -2.44 -11.47 16 9 C 0.10 0.87 6.04 86.22 0.52 1.39 16 10 C -0.13 -1.30 5.13 30.53 0.16 -1.15 16 11 C -0.08 -0.97 2.15 -10.77 -0.02 -0.99 16 12 C -0.10 -1.82 4.94 30.60 0.15 -1.67 16 13 C 0.06 1.23 5.44 86.30 0.47 1.70 16 14 N -0.69 -20.86 6.13 -517.91 -3.17 -24.04 16 15 C 0.07 2.19 6.17 85.55 0.53 2.72 16 16 C 0.44 20.61 7.82 87.66 0.69 21.29 16 17 O -0.63 -34.85 15.78 -3.07 -0.05 -34.90 16 18 N -0.57 -29.21 5.29 -306.99 -1.62 -30.83 16 19 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 22 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 23 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C -0.12 -1.73 5.36 30.67 0.16 -1.57 16 28 C 0.11 1.72 6.42 86.36 0.55 2.27 16 29 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.07 0.45 6.70 -2.39 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.89 8.04 -2.39 -0.02 0.88 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.62 7.74 -2.38 -0.02 0.60 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.56 6.85 -2.39 -0.02 0.54 16 37 H 0.11 0.54 5.18 -2.38 -0.01 0.53 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.77 6.50 -2.39 -0.02 0.75 16 40 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 0.77 6.53 -2.38 -0.02 0.76 16 45 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.34 11.01 8.43 -89.69 -0.76 10.25 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 49 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 50 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 51 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.07 1.40 7.03 -2.39 -0.02 1.38 16 Total: -1.00 -73.68 421.01 0.91 -72.78 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.60 Total: 37.18 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.53 Total: 11.95 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -6.95 Total: -115.12 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.10 Total: -51.46 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.68 0.91 -72.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666190859.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.313 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds