Wall clock time and date at job start Wed Apr 1 2020 00:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46620 * 2 1 4 4 N 1.46899 * 109.46849 * 119.99930 * 2 1 3 5 5 C 1.46850 * 111.00001 * 292.99496 * 4 2 1 6 6 C 1.53041 * 109.51938 * 174.16646 * 5 4 2 7 7 C 1.53113 * 109.28013 * 59.17734 * 6 5 4 8 8 C 1.53114 * 109.16391 * 302.34398 * 7 6 5 9 9 C 1.46849 * 110.99550 * 168.78913 * 4 2 1 10 10 H 1.08997 * 109.46443 * 65.82334 * 9 4 2 11 11 C 1.50705 * 109.46112 * 305.85401 * 9 4 2 12 12 O 1.21279 * 120.00017 * 333.13132 * 11 9 4 13 13 N 1.34781 * 119.99535 * 153.13420 * 11 9 4 14 14 C 1.46497 * 119.99310 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.46678 * 179.97438 * 14 13 11 16 16 O 1.42904 * 110.64303 * 300.69810 * 15 14 13 17 17 C 1.55156 * 110.71826 * 177.56000 * 15 14 13 18 18 C 1.54908 * 101.58337 * 206.13200 * 17 15 14 19 19 N 1.47426 * 104.82786 * 37.01339 * 18 17 15 20 20 C 1.36938 * 125.64742 * 155.83900 * 19 18 17 21 21 H 1.07995 * 120.00253 * 340.61053 * 20 19 18 22 22 C 1.38813 * 119.99881 * 160.61841 * 20 19 18 23 23 N 1.31623 * 120.00044 * 155.12919 * 22 20 19 24 24 Si 1.86798 * 120.00003 * 335.12903 * 22 20 19 25 25 H 1.48492 * 109.47253 * 86.21479 * 24 22 20 26 26 H 1.48507 * 109.46851 * 206.21495 * 24 22 20 27 27 H 1.48504 * 109.46932 * 326.21120 * 24 22 20 28 28 C 1.47316 * 108.73641 * 335.71171 * 19 18 17 29 29 H 1.08998 * 109.47290 * 299.99838 * 1 2 3 30 30 H 1.09007 * 109.47061 * 59.99958 * 1 2 3 31 31 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47290 * 240.00162 * 2 1 3 33 33 H 1.09008 * 109.46817 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47320 * 299.99636 * 3 2 1 35 35 H 1.08998 * 109.47157 * 60.00081 * 3 2 1 36 36 H 1.08998 * 109.46146 * 54.14954 * 5 4 2 37 37 H 1.08998 * 109.45231 * 294.17334 * 5 4 2 38 38 H 1.09007 * 109.50016 * 299.23667 * 6 5 4 39 39 H 1.08997 * 109.49767 * 179.12552 * 6 5 4 40 40 H 1.09006 * 109.52009 * 182.43881 * 7 6 5 41 41 H 1.09001 * 109.52048 * 62.25443 * 7 6 5 42 42 H 1.08999 * 109.50674 * 177.59190 * 8 7 6 43 43 H 1.08997 * 109.50686 * 297.71308 * 8 7 6 44 44 H 0.96992 * 120.00074 * 0.02562 * 13 11 9 45 45 H 1.08993 * 109.47786 * 299.99794 * 14 13 11 46 46 H 1.08998 * 109.47472 * 60.00578 * 14 13 11 47 47 H 0.96707 * 113.99392 * 59.30005 * 16 15 14 48 48 H 1.09006 * 111.00711 * 324.21269 * 17 15 14 49 49 H 1.09003 * 111.00505 * 88.02218 * 17 15 14 50 50 H 1.09000 * 110.36805 * 155.84719 * 18 17 15 51 51 H 1.08998 * 110.37397 * 278.06298 * 18 17 15 52 52 H 0.96999 * 119.99690 * 179.97438 * 23 22 20 53 53 H 1.08998 * 110.06752 * 241.87306 * 28 19 18 54 54 H 1.09001 * 109.85041 * 120.61047 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6900 0.0631 2.4147 6 6 2.0840 -0.7539 3.6474 7 6 3.5855 -1.0497 3.5992 8 6 3.9096 -1.7944 2.3013 9 6 3.4629 -0.9473 1.1076 10 1 4.0002 0.0010 1.1139 11 6 3.7621 -1.6852 -0.1719 12 8 2.9128 -2.3857 -0.6807 13 7 4.9735 -1.5667 -0.7506 14 6 5.2645 -2.2845 -1.9941 15 6 6.6973 -1.9794 -2.4357 16 8 6.8724 -0.5765 -2.6440 17 6 7.0572 -2.7740 -3.7188 18 6 8.5974 -2.8845 -3.5945 19 7 8.8473 -3.0695 -2.1534 20 6 9.9531 -3.6624 -1.6049 21 1 10.5736 -4.3094 -2.2070 22 6 10.2764 -3.4317 -0.2748 23 7 10.9885 -4.3152 0.3922 24 14 9.7010 -1.8674 0.5685 25 1 8.3339 -2.0717 1.1111 26 1 10.6292 -1.5332 1.6785 27 1 9.6826 -0.7536 -0.4136 28 6 7.7122 -2.5085 -1.4004 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 0.6189 0.2632 2.4387 37 1 2.2359 1.0066 2.4148 38 1 1.5283 -1.6917 3.6552 39 1 1.8535 -0.1862 4.5489 40 1 3.8625 -1.6681 4.4530 41 1 4.1424 -0.1132 3.6308 42 1 4.9837 -1.9702 2.2410 43 1 3.3829 -2.7486 2.2879 44 1 5.6528 -1.0068 -0.3434 45 1 5.1553 -3.3563 -1.8290 46 1 4.5695 -1.9637 -2.7700 47 1 6.6964 -0.0376 -1.8606 48 1 6.5928 -3.7601 -3.7109 49 1 6.7757 -2.2191 -4.6138 50 1 8.9626 -3.7442 -4.1563 51 1 9.0733 -1.9704 -3.9495 52 1 11.2147 -4.1537 1.3215 53 1 8.0526 -1.6917 -0.7641 54 1 7.2502 -3.2867 -0.7929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672030112.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:37 Heat of formation + Delta-G solvation = -76.975244 kcal Electronic energy + Delta-G solvation = -32251.553940 eV Core-core repulsion = 28222.972446 eV Total energy + Delta-G solvation = -4028.581494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.79055 -40.59060 -39.18429 -36.92314 -36.16919 -35.33159 -34.33073 -32.59279 -31.65632 -31.22579 -30.07059 -28.13452 -27.72987 -26.00633 -25.17556 -24.55460 -22.46350 -21.71614 -21.59123 -21.42832 -20.27935 -19.30210 -18.57993 -18.13811 -17.56274 -17.00652 -16.58672 -16.45466 -15.98382 -15.85474 -15.55734 -15.35824 -15.31918 -15.22092 -14.89488 -14.64307 -14.50159 -14.36317 -14.20589 -13.88223 -13.80449 -13.65569 -13.40643 -13.30327 -13.00760 -12.93241 -12.70358 -12.48983 -12.44400 -12.22991 -12.17119 -12.12082 -12.05171 -11.89641 -11.65501 -11.58558 -11.51871 -11.22664 -11.02766 -10.76709 -10.67342 -10.24375 -9.23093 -9.11788 -8.22331 -5.47659 1.20136 1.35409 1.45613 1.49535 1.90387 2.37681 2.83739 2.92086 3.03242 3.18761 3.46285 3.58674 3.68245 3.72588 3.77126 3.86496 3.97600 4.02923 4.14371 4.23875 4.25836 4.34592 4.36730 4.37963 4.49888 4.53169 4.64668 4.67260 4.71761 4.74052 4.74165 4.77471 4.78587 4.88266 4.94897 4.96580 4.99884 5.01561 5.07410 5.13571 5.19256 5.23094 5.27829 5.29080 5.36799 5.44314 5.63778 5.97633 6.06290 6.17264 6.36130 6.58449 6.70762 7.10658 7.48761 8.05539 8.97747 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.003628 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.101800 B = 7715.981169 C = 9008.182426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 C -0.181 4.181 4 N -0.524 5.524 5 C 0.052 3.948 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.110 4.110 9 C 0.075 3.925 10 H 0.077 0.923 11 C 0.519 3.481 12 O -0.554 6.554 13 N -0.725 5.725 14 C 0.117 3.883 15 C 0.122 3.878 16 O -0.547 6.547 17 C -0.104 4.104 18 C 0.127 3.873 19 N -0.624 5.624 20 C -0.241 4.241 21 H 0.059 0.941 22 C -0.039 4.039 23 N -0.952 5.952 24 Si 0.948 3.052 25 H -0.261 1.261 26 H -0.309 1.309 27 H -0.271 1.271 28 C 0.098 3.902 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.404 0.596 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.382 0.618 48 H 0.098 0.902 49 H 0.108 0.892 50 H 0.052 0.948 51 H 0.029 0.971 52 H 0.263 0.737 53 H 0.024 0.976 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.195 14.392 3.065 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 C -0.240 4.240 4 N -0.249 5.249 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.037 4.037 10 H 0.095 0.905 11 C 0.306 3.694 12 O -0.431 6.431 13 N -0.379 5.379 14 C -0.007 4.007 15 C 0.080 3.920 16 O -0.354 6.354 17 C -0.142 4.142 18 C 0.002 3.998 19 N -0.351 5.351 20 C -0.370 4.370 21 H 0.077 0.923 22 C -0.234 4.234 23 N -0.598 5.598 24 Si 0.777 3.223 25 H -0.187 1.187 26 H -0.238 1.238 27 H -0.197 1.197 28 C -0.027 4.027 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.240 0.760 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.231 0.769 48 H 0.116 0.884 49 H 0.127 0.873 50 H 0.070 0.930 51 H 0.047 0.953 52 H 0.072 0.928 53 H 0.041 0.959 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -22.753 13.138 2.263 26.371 hybrid contribution 1.279 1.239 1.167 2.129 sum -21.474 14.377 3.430 26.069 Atomic orbital electron populations 1.21732 0.93195 1.01765 1.02365 1.21818 0.96995 0.92637 0.92705 1.22452 1.01000 0.97161 1.03403 1.61908 1.11239 1.48579 1.03207 1.22280 1.01880 0.94936 0.88426 1.21621 0.95453 1.00748 0.97533 1.21571 0.97076 1.00644 0.96052 1.21569 1.00721 0.98898 0.93697 1.21569 0.91305 0.98510 0.92283 0.90506 1.20860 0.81224 0.81528 0.85803 1.90682 1.46978 1.40387 1.65039 1.45998 1.15193 1.50379 1.26316 1.21830 0.94930 0.97526 0.86453 1.22281 0.91190 0.82266 0.96234 1.86563 1.92409 1.15990 1.40459 1.22748 0.95154 1.00117 0.96188 1.21808 0.94857 0.98726 0.84371 1.44887 1.18097 1.69515 1.02645 1.18622 1.03008 1.20200 0.95147 0.92272 1.25697 0.99484 1.00956 0.97255 1.70008 1.44766 1.35024 1.09998 0.85871 0.77414 0.82024 0.76990 1.18714 1.23774 1.19663 1.22450 0.89068 0.96314 0.94906 0.91384 0.91490 0.93413 0.91722 0.93165 0.91351 0.90928 0.89202 0.93385 0.92083 0.89307 0.90668 0.90885 0.91371 0.92129 0.76024 0.91133 0.89302 0.76860 0.88403 0.87328 0.92969 0.95327 0.92819 0.95908 0.94750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.15 71.98 0.66 -1.54 16 2 C 0.07 1.28 2.54 44.92 0.11 1.39 16 3 C -0.18 -2.64 8.43 71.98 0.61 -2.04 16 4 N -0.52 -10.49 4.19 -850.36 -3.56 -14.06 16 5 C 0.05 0.75 4.51 86.33 0.39 1.14 16 6 C -0.12 -1.59 6.09 30.65 0.19 -1.41 16 7 C -0.12 -1.79 6.00 30.67 0.18 -1.60 16 8 C -0.11 -2.31 5.36 30.65 0.16 -2.14 16 9 C 0.08 1.57 1.93 44.19 0.09 1.66 16 10 H 0.08 1.33 6.92 -2.39 -0.02 1.31 16 11 C 0.52 13.69 5.85 87.66 0.51 14.21 16 12 O -0.55 -18.56 15.14 -3.03 -0.05 -18.61 16 13 N -0.73 -17.58 5.17 -463.06 -2.39 -19.97 16 14 C 0.12 3.08 4.73 86.38 0.41 3.49 16 15 C 0.12 3.63 0.92 -9.60 -0.01 3.63 16 16 O -0.55 -15.20 13.09 -148.98 -1.95 -17.15 16 17 C -0.10 -3.01 6.26 31.99 0.20 -2.81 16 18 C 0.13 4.84 7.23 86.85 0.63 5.47 16 19 N -0.62 -29.68 3.19 -691.25 -2.21 -31.89 16 20 C -0.24 -13.94 10.54 84.03 0.89 -13.05 16 21 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 22 C -0.04 -2.29 5.42 84.86 0.46 -1.83 16 23 N -0.95 -59.91 13.97 21.65 0.30 -59.61 16 24 Si 0.95 45.35 24.45 68.60 1.68 47.03 16 25 H -0.26 -11.22 6.87 99.48 0.68 -10.54 16 26 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 27 H -0.27 -12.54 6.93 99.48 0.69 -11.85 16 28 C 0.10 3.89 4.25 86.67 0.37 4.26 16 29 H 0.07 0.90 6.47 -2.39 -0.02 0.88 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.63 5.65 -2.39 -0.01 1.62 16 33 H 0.05 0.75 6.86 -2.38 -0.02 0.74 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.88 6.45 -2.39 -0.02 0.86 16 36 H 0.09 1.14 6.26 -2.39 -0.01 1.13 16 37 H 0.05 0.61 6.57 -2.39 -0.02 0.59 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.40 8.47 7.32 -92.71 -0.68 7.79 16 45 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 46 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.38 8.04 7.94 -74.05 -0.59 7.45 16 48 H 0.10 2.62 8.05 -2.38 -0.02 2.60 16 49 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 50 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 53 H 0.02 0.96 3.51 -2.39 -0.01 0.95 16 54 H 0.03 1.47 7.80 -2.39 -0.02 1.45 16 Total: -1.00 -74.06 399.45 -2.74 -76.80 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.41 Total: 28.61 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.84 Total: 8.83 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -7.86 Total: -125.52 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -2.00 Total: -35.75 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.68 Total: 47.03 kcal Total: -74.06 -2.74 -76.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672030112.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.171 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds