Wall clock time and date at job start Wed Apr 1 2020 00:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 N 1.46897 * 109.46964 * 120.00362 * 2 1 3 5 5 C 1.46853 * 110.99053 * 304.39616 * 4 2 1 6 6 C 1.53035 * 109.51341 * 185.84991 * 5 4 2 7 7 C 1.53113 * 109.28224 * 300.81837 * 6 5 4 8 8 C 1.53119 * 109.16189 * 57.65431 * 7 6 5 9 9 C 1.46845 * 111.00319 * 68.60223 * 4 2 1 10 10 H 1.09001 * 109.46208 * 294.16387 * 9 4 2 11 11 C 1.50699 * 109.46275 * 54.14469 * 9 4 2 12 12 O 1.21278 * 120.00005 * 30.41380 * 11 9 4 13 13 N 1.34774 * 119.99644 * 210.41431 * 11 9 4 14 14 C 1.46500 * 119.99730 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47399 * 180.02562 * 14 13 11 16 16 O 1.42907 * 110.91649 * 67.44687 * 15 14 13 17 17 C 1.55394 * 111.04191 * 191.23015 * 15 14 13 18 18 C 1.54318 * 102.83334 * 153.47200 * 17 15 14 19 19 N 1.47026 * 107.39780 * 337.97907 * 18 17 15 20 20 C 1.36937 * 125.64556 * 178.82816 * 19 18 17 21 21 H 1.08000 * 119.99810 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00262 * 0.02562 * 20 19 18 23 23 N 1.31621 * 120.00027 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00028 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46910 * 89.99980 * 24 22 20 26 26 H 1.48496 * 109.46948 * 210.00034 * 24 22 20 27 27 H 1.48495 * 109.47031 * 329.99797 * 24 22 20 28 28 C 1.47423 * 108.70374 * 358.85849 * 19 18 17 29 29 H 1.09005 * 109.46685 * 300.00135 * 1 2 3 30 30 H 1.08993 * 109.47028 * 59.99569 * 1 2 3 31 31 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47003 * 240.00109 * 2 1 3 33 33 H 1.08993 * 109.47207 * 293.95280 * 3 2 1 34 34 H 1.08999 * 109.46758 * 53.95056 * 3 2 1 35 35 H 1.08993 * 109.47202 * 173.94866 * 3 2 1 36 36 H 1.08994 * 109.47080 * 65.83798 * 5 4 2 37 37 H 1.08993 * 109.45494 * 305.85274 * 5 4 2 38 38 H 1.08998 * 109.50557 * 180.87517 * 6 5 4 39 39 H 1.09003 * 109.53814 * 60.77734 * 6 5 4 40 40 H 1.09004 * 109.52516 * 297.74936 * 7 6 5 41 41 H 1.09001 * 109.52504 * 177.55989 * 7 6 5 42 42 H 1.09001 * 109.50388 * 182.40890 * 8 7 6 43 43 H 1.09002 * 109.50686 * 62.28746 * 8 7 6 44 44 H 0.96996 * 120.00918 * 0.02562 * 13 11 9 45 45 H 1.08995 * 109.47424 * 60.00291 * 14 13 11 46 46 H 1.09003 * 109.47160 * 300.00056 * 14 13 11 47 47 H 0.96705 * 113.99820 * 297.56024 * 16 15 14 48 48 H 1.08999 * 110.69526 * 35.18314 * 17 15 14 49 49 H 1.09002 * 110.85167 * 271.83720 * 17 15 14 50 50 H 1.08998 * 109.88351 * 218.48401 * 18 17 15 51 51 H 1.09004 * 109.88239 * 97.46726 * 18 17 15 52 52 H 0.96991 * 119.99730 * 180.02562 * 23 22 20 53 53 H 1.09004 * 110.36237 * 142.96811 * 28 19 18 54 54 H 1.08994 * 110.36703 * 265.28889 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4648 -0.0899 2.4182 6 6 2.1063 -0.7385 3.6469 7 6 1.8280 -2.2440 3.6272 8 6 2.3728 -2.8389 2.3257 9 6 1.7235 -2.1294 1.1352 10 1 0.6444 -2.2796 1.1674 11 6 2.2716 -2.6982 -0.1482 12 8 3.2629 -2.2137 -0.6516 13 7 1.6601 -3.7453 -0.7365 14 6 2.1926 -4.2979 -1.9844 15 6 1.3192 -5.4698 -2.4369 16 8 0.0200 -5.0181 -2.8243 17 6 1.9983 -6.2590 -3.5905 18 6 1.3997 -7.6730 -3.4373 19 7 0.9255 -7.8019 -2.0516 20 6 0.3079 -8.9018 -1.5186 21 1 -0.0047 -8.8975 -0.4848 22 6 0.0837 -10.0221 -2.3069 23 7 0.4651 -10.0275 -3.5666 24 14 -0.7595 -11.5222 -1.5798 25 1 -2.2279 -11.4036 -1.7664 26 1 -0.2706 -12.7455 -2.2651 27 1 -0.4501 -11.6098 -0.1301 28 6 1.2244 -6.5508 -1.3314 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.7679 1.9241 -0.9391 34 1 1.5910 1.9866 0.8309 35 1 3.1246 1.4443 0.1083 36 1 0.3869 -0.2498 2.4443 37 1 1.6735 0.9798 2.4217 38 1 1.6830 -0.3021 4.5516 39 1 3.1826 -0.5672 3.6294 40 1 0.7533 -2.4167 3.6847 41 1 2.3197 -2.7166 4.4775 42 1 2.1399 -3.9030 2.2864 43 1 3.4533 -2.7006 2.2866 44 1 0.8671 -4.1326 -0.3341 45 1 3.2125 -4.6462 -1.8216 46 1 2.1908 -3.5257 -2.7537 47 1 -0.4823 -4.6049 -2.1087 48 1 3.0799 -6.2816 -3.4572 49 1 1.7369 -5.8323 -4.5589 50 1 2.1645 -8.4231 -3.6388 51 1 0.5658 -7.7993 -4.1278 52 1 0.3081 -10.8103 -4.1174 53 1 0.4199 -6.3123 -0.6356 54 1 2.1729 -6.6356 -0.8012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672030114.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:45 Heat of formation + Delta-G solvation = -83.040543 kcal Electronic energy + Delta-G solvation = -31715.004372 eV Core-core repulsion = 27686.159868 eV Total energy + Delta-G solvation = -4028.844505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.69676 -40.36582 -39.09232 -36.73887 -36.10784 -35.29483 -33.99977 -32.46312 -31.33956 -31.17320 -29.68965 -28.12505 -27.54633 -25.98168 -25.10695 -24.42269 -22.37051 -21.59234 -21.41316 -21.36388 -20.18926 -18.94134 -18.57046 -17.62436 -17.33532 -16.72844 -16.57609 -16.46884 -16.07090 -15.71032 -15.57013 -15.34086 -15.18252 -15.06727 -14.65288 -14.57704 -14.32768 -14.16361 -13.90950 -13.79168 -13.66934 -13.35227 -13.24030 -12.94279 -12.89237 -12.75743 -12.68214 -12.40755 -12.36529 -12.11952 -12.07341 -12.01134 -11.99977 -11.80404 -11.72063 -11.58893 -11.51667 -11.17778 -10.95286 -10.69079 -10.59315 -10.15792 -9.18888 -8.89478 -7.84763 -5.20457 1.46021 1.48186 1.56604 1.58005 1.99531 2.49048 2.89695 3.17033 3.33827 3.45717 3.58358 3.69257 3.83761 3.90534 3.91906 3.96398 4.03681 4.08406 4.17679 4.30437 4.31255 4.38309 4.47260 4.58038 4.58748 4.64686 4.70390 4.74626 4.79472 4.80324 4.81825 4.92096 4.93396 4.95603 4.99681 5.05232 5.07328 5.12698 5.19910 5.25534 5.28019 5.33658 5.38451 5.44225 5.49707 5.62823 5.75742 6.03235 6.18634 6.20203 6.49282 6.80593 7.08943 7.21108 7.76449 8.40533 9.26008 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.002672 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.177009 B =10475.476697 C =11353.904344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 C -0.134 4.134 4 N -0.524 5.524 5 C 0.051 3.949 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.107 4.107 9 C 0.076 3.924 10 H 0.077 0.923 11 C 0.518 3.482 12 O -0.561 6.561 13 N -0.718 5.718 14 C 0.122 3.878 15 C 0.123 3.877 16 O -0.553 6.553 17 C -0.121 4.121 18 C 0.190 3.810 19 N -0.621 5.621 20 C -0.240 4.240 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.266 1.266 28 C 0.115 3.885 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.409 0.591 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.383 0.617 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.008 0.992 51 H 0.008 0.992 52 H 0.246 0.754 53 H 0.057 0.943 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 23.100 14.012 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.041 4.041 3 C -0.192 4.192 4 N -0.249 5.249 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.145 4.145 9 C -0.036 4.036 10 H 0.095 0.905 11 C 0.305 3.695 12 O -0.439 6.439 13 N -0.372 5.372 14 C -0.003 4.003 15 C 0.080 3.920 16 O -0.360 6.360 17 C -0.160 4.160 18 C 0.065 3.935 19 N -0.347 5.347 20 C -0.369 4.369 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.190 1.190 28 C -0.011 4.011 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.245 0.755 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.232 0.768 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.026 0.974 51 H 0.026 0.974 52 H 0.055 0.945 53 H 0.075 0.925 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.408 23.058 13.039 26.527 hybrid contribution -1.589 -1.411 0.245 2.139 sum -0.180 21.647 13.284 25.399 Atomic orbital electron populations 1.22446 0.96260 1.02033 1.03277 1.21787 0.93389 0.96182 0.92768 1.21743 1.01177 0.93988 1.02256 1.61940 1.59987 1.00114 1.02894 1.22268 0.97216 0.99578 0.88499 1.21624 1.01289 0.95226 0.97339 1.21564 1.01596 0.95852 0.96230 1.21559 1.00510 0.99306 0.93159 1.21590 0.99338 0.90276 0.92378 0.90508 1.20903 0.83407 0.79276 0.85913 1.90688 1.26841 1.60652 1.65673 1.45955 1.32086 1.33630 1.25479 1.21689 0.97454 0.94905 0.86208 1.22434 0.83405 0.90989 0.95137 1.86604 1.28125 1.80573 1.40656 1.22838 0.99871 0.95034 0.98254 1.20818 0.95125 0.91684 0.85882 1.44632 1.69137 1.12693 1.08205 1.19469 1.30230 0.91548 0.95649 0.89521 1.25692 1.02610 1.01411 0.96486 1.70199 1.53164 1.29629 1.07200 0.85064 0.77830 0.78470 0.77879 1.21345 1.22375 1.19021 1.22326 0.98636 0.86129 0.94014 0.90927 0.91629 0.92968 0.92066 0.91802 0.91305 0.93137 0.93455 0.89526 0.89521 0.92178 0.90848 0.90480 0.90360 0.92305 0.75461 0.90857 0.90830 0.76846 0.88899 0.90026 0.97360 0.97412 0.94504 0.92533 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.47 71.98 0.61 -2.01 16 2 C 0.07 1.26 2.57 44.92 0.12 1.37 16 3 C -0.13 -2.17 8.92 71.98 0.64 -1.52 16 4 N -0.52 -9.77 4.22 -850.40 -3.59 -13.35 16 5 C 0.05 0.68 4.57 86.32 0.39 1.07 16 6 C -0.12 -1.38 6.09 30.64 0.19 -1.20 16 7 C -0.11 -1.39 6.00 30.67 0.18 -1.21 16 8 C -0.11 -1.81 5.36 30.65 0.16 -1.64 16 9 C 0.08 1.40 1.87 44.19 0.08 1.48 16 10 H 0.08 1.14 6.83 -2.39 -0.02 1.13 16 11 C 0.52 12.68 5.75 87.66 0.50 13.18 16 12 O -0.56 -18.38 15.37 -3.02 -0.05 -18.43 16 13 N -0.72 -15.79 5.19 -463.07 -2.40 -18.19 16 14 C 0.12 3.25 4.97 86.38 0.43 3.68 16 15 C 0.12 3.91 0.95 -9.32 -0.01 3.90 16 16 O -0.55 -17.79 13.18 -148.98 -1.96 -19.75 16 17 C -0.12 -4.50 6.18 31.86 0.20 -4.31 16 18 C 0.19 9.56 5.37 86.73 0.47 10.03 16 19 N -0.62 -31.26 3.39 -691.99 -2.35 -33.61 16 20 C -0.24 -13.23 10.28 84.03 0.86 -12.37 16 21 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 22 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 23 N -0.95 -58.11 10.31 21.65 0.22 -57.89 16 24 Si 0.98 45.56 29.55 68.60 2.03 47.58 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 28 C 0.11 4.24 5.74 86.86 0.50 4.74 16 29 H 0.07 0.86 6.47 -2.38 -0.02 0.84 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.76 6.76 -2.39 -0.02 0.75 16 32 H 0.06 1.55 5.82 -2.39 -0.01 1.53 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.86 6.69 -2.39 -0.02 0.85 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.54 6.58 -2.39 -0.02 0.52 16 37 H 0.09 1.04 6.28 -2.39 -0.02 1.02 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.41 7.20 7.31 -92.71 -0.68 6.52 16 45 H 0.07 2.07 8.01 -2.39 -0.02 2.05 16 46 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.38 8.87 8.58 -74.05 -0.64 8.23 16 48 H 0.09 3.06 7.94 -2.39 -0.02 3.04 16 49 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 50 H 0.01 0.46 7.51 -2.39 -0.02 0.44 16 51 H 0.01 0.44 7.37 -2.39 -0.02 0.42 16 52 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 53 H 0.06 1.88 7.80 -2.38 -0.02 1.86 16 54 H 0.03 1.23 8.04 -2.39 -0.02 1.21 16 Total: -1.00 -73.87 404.82 -2.72 -76.60 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.42 Total: 25.32 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 5.80 Total: 11.72 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -8.12 Total: -123.04 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -2.01 Total: -38.19 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -73.87 -2.72 -76.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672030114.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.444 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds