Wall clock time and date at job start Tue Mar 31 2020 23:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46831 * 2 1 4 4 H 1.09001 * 109.46843 * 304.99653 * 3 2 1 5 5 N 1.46496 * 109.47560 * 64.99721 * 3 2 1 6 6 C 1.34779 * 120.00230 * 275.00034 * 5 3 2 7 7 C 1.50696 * 120.00217 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99716 * 0.02562 * 6 5 3 9 9 C 1.50703 * 109.46908 * 184.99761 * 3 2 1 10 10 O 1.21287 * 119.99980 * 239.99721 * 9 3 2 11 11 N 1.34770 * 119.99899 * 59.99961 * 9 3 2 12 12 C 1.46501 * 119.99987 * 179.97438 * 11 9 3 13 13 C 1.53006 * 109.47428 * 179.97438 * 12 11 9 14 14 H 1.08993 * 109.46765 * 54.99754 * 13 12 11 15 15 C 1.52999 * 109.47000 * 175.00339 * 13 12 11 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47127 * 299.99539 * 16 15 13 18 18 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 19 19 C 1.52996 * 109.47131 * 179.97438 * 17 16 15 20 20 N 1.46495 * 109.47172 * 175.00143 * 19 17 16 21 21 C 1.36936 * 120.00085 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00357 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00248 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00455 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99999 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46739 * 90.00067 * 25 23 21 27 27 H 1.48498 * 109.47495 * 210.00342 * 25 23 21 28 28 H 1.48503 * 109.46758 * 330.00302 * 25 23 21 29 29 C 1.53002 * 109.46817 * 60.00361 * 17 16 15 30 30 C 1.52996 * 109.46972 * 299.99733 * 29 17 16 31 31 H 1.08996 * 109.46702 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47491 * 300.00122 * 1 2 3 33 33 H 1.08996 * 109.46692 * 60.00583 * 1 2 3 34 34 H 1.09000 * 109.47491 * 239.99878 * 2 1 3 35 35 H 1.08999 * 109.47156 * 119.99251 * 2 1 3 36 36 H 0.97004 * 119.99905 * 94.99526 * 5 3 2 37 37 H 1.08996 * 109.47025 * 0.02562 * 7 6 5 38 38 H 1.09001 * 109.46907 * 120.00310 * 7 6 5 39 39 H 1.08997 * 109.47634 * 240.00107 * 7 6 5 40 40 H 0.97003 * 120.00658 * 359.97438 * 11 9 3 41 41 H 1.09001 * 109.47088 * 59.99766 * 12 11 9 42 42 H 1.08998 * 109.47552 * 299.99968 * 12 11 9 43 43 H 1.08993 * 109.47839 * 60.00073 * 15 13 12 44 44 H 1.09000 * 109.47160 * 299.99635 * 15 13 12 45 45 H 1.09001 * 109.46801 * 59.99811 * 16 15 13 46 46 H 1.09001 * 109.46998 * 179.97438 * 16 15 13 47 47 H 1.09000 * 109.47315 * 295.00431 * 19 17 16 48 48 H 1.09007 * 109.46739 * 55.00050 * 19 17 16 49 49 H 0.97003 * 120.00137 * 359.97438 * 20 19 17 50 50 H 0.96997 * 120.00415 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.47407 * 60.00219 * 29 17 16 52 52 H 1.09000 * 109.46986 * 179.97438 * 29 17 16 53 53 H 1.09001 * 109.46993 * 180.02562 * 30 29 17 54 54 H 1.09000 * 109.47380 * 299.99696 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4351 2.6645 1.3668 7 6 0.0361 3.3378 2.6546 8 8 -0.3397 2.6319 0.4342 9 6 3.5419 1.4444 -0.1238 10 8 4.2216 1.9437 0.7478 11 7 4.1298 0.8912 -1.2030 12 6 5.5898 0.8934 -1.3236 13 6 5.9947 0.2087 -2.6306 14 1 5.4888 0.6925 -3.4661 15 6 7.5091 0.3208 -2.8171 16 6 7.9139 -0.3635 -4.1245 17 6 7.5143 -1.8394 -4.0726 18 1 8.0202 -2.3236 -3.2373 19 6 7.9185 -2.5235 -5.3801 20 7 7.6450 -3.9595 -5.2847 21 6 7.9282 -4.7821 -6.3422 22 1 8.3528 -4.3723 -7.2467 23 6 7.6686 -6.1428 -6.2521 24 7 7.9403 -6.9334 -7.2686 25 14 6.9335 -6.8518 -4.6880 26 1 5.4518 -6.8278 -4.7824 27 1 7.3959 -8.2522 -4.5142 28 1 7.3686 -6.0389 -3.5239 29 6 5.9999 -1.9515 -3.8860 30 6 5.5951 -1.2673 -2.5787 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 2.2719 2.1233 1.9977 37 1 0.8548 3.2666 3.3706 38 1 -0.1873 4.3872 2.4619 39 1 -0.8476 2.8473 3.0626 40 1 3.5862 0.4915 -1.9000 41 1 6.0247 0.3548 -0.4817 42 1 5.9528 1.9212 -1.3239 43 1 8.0150 -0.1630 -1.9817 44 1 7.7938 1.3723 -2.8546 45 1 7.4080 0.1208 -4.9597 46 1 8.9928 -0.2833 -4.2576 47 1 7.3460 -2.0985 -6.2045 48 1 8.9825 -2.3672 -5.5580 49 1 7.2640 -4.3278 -4.4722 50 1 7.7592 -7.8842 -7.2055 51 1 5.4940 -1.4673 -4.7213 52 1 5.7151 -3.0030 -3.8494 53 1 4.5163 -1.3475 -2.4455 54 1 6.1009 -1.7515 -1.7434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672377570.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:01 Heat of formation + Delta-G solvation = -120.022741 kcal Electronic energy + Delta-G solvation = -29888.334983 eV Core-core repulsion = 25857.886809 eV Total energy + Delta-G solvation = -4030.448173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.61423 -40.43209 -39.75529 -37.12415 -36.41074 -35.68981 -33.93904 -33.46864 -32.02601 -31.61744 -30.62288 -28.90646 -27.43429 -25.41531 -24.03429 -23.39833 -22.94326 -21.69607 -21.64740 -21.32344 -20.65879 -19.63007 -18.80781 -17.93134 -17.17159 -16.86532 -16.65329 -16.40938 -16.37376 -15.97331 -15.76180 -15.22919 -15.16342 -14.96784 -14.87084 -14.64013 -14.53562 -14.42401 -14.03126 -13.74422 -13.58699 -13.34265 -13.28342 -13.12267 -13.02226 -12.92891 -12.87551 -12.62057 -12.50156 -12.37227 -12.12111 -11.94391 -11.91205 -11.85047 -11.78726 -11.31288 -11.14002 -10.99766 -10.95775 -10.89236 -10.81645 -10.18569 -10.09241 -9.28415 -8.03555 -5.36390 1.35619 1.39714 1.43151 1.47217 1.61111 1.84989 2.44487 2.47312 3.27610 3.49996 3.59466 3.69401 3.82127 3.83863 3.85959 3.94460 4.01297 4.18454 4.29898 4.33590 4.35452 4.46108 4.54856 4.56606 4.59200 4.63344 4.66211 4.67541 4.77699 4.80102 4.85437 4.94440 4.98394 5.03056 5.04979 5.10114 5.10347 5.22065 5.23033 5.29751 5.33877 5.34682 5.36493 5.40761 5.46266 5.56202 5.67040 5.75456 6.20984 6.40144 6.51027 7.06435 7.07924 7.21683 7.85150 8.04685 9.18200 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002028 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.990098 B =13803.837796 C =15048.705433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.128 3.872 4 H 0.110 0.890 5 N -0.709 5.709 6 C 0.508 3.492 7 C -0.166 4.166 8 O -0.581 6.581 9 C 0.514 3.486 10 O -0.571 6.571 11 N -0.711 5.711 12 C 0.130 3.870 13 C -0.088 4.088 14 H 0.088 0.912 15 C -0.104 4.104 16 C -0.104 4.104 17 C -0.089 4.089 18 H 0.063 0.937 19 C 0.155 3.845 20 N -0.756 5.756 21 C -0.236 4.236 22 H 0.053 0.947 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.956 3.044 26 H -0.275 1.275 27 H -0.296 1.296 28 H -0.252 1.252 29 C -0.110 4.110 30 C -0.108 4.108 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.415 0.585 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.414 0.586 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.022 0.978 48 H 0.017 0.983 49 H 0.366 0.634 50 H 0.258 0.742 51 H 0.064 0.936 52 H 0.043 0.957 53 H 0.075 0.925 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.723 23.143 22.410 35.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.019 3.981 4 H 0.128 0.872 5 N -0.364 5.364 6 C 0.297 3.703 7 C -0.225 4.225 8 O -0.461 6.461 9 C 0.300 3.700 10 O -0.450 6.450 11 N -0.363 5.363 12 C 0.006 3.994 13 C -0.107 4.107 14 H 0.106 0.894 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.108 4.108 18 H 0.082 0.918 19 C 0.029 3.971 20 N -0.402 5.402 21 C -0.367 4.367 22 H 0.071 0.929 23 C -0.257 4.257 24 N -0.635 5.635 25 Si 0.783 3.217 26 H -0.201 1.201 27 H -0.222 1.222 28 H -0.177 1.177 29 C -0.148 4.148 30 C -0.146 4.146 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.252 0.748 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.035 0.965 49 H 0.199 0.801 50 H 0.067 0.933 51 H 0.083 0.917 52 H 0.062 0.938 53 H 0.093 0.907 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.680 23.452 22.158 35.045 hybrid contribution -0.014 -1.273 0.122 1.279 sum -13.694 22.179 22.280 34.290 Atomic orbital electron populations 1.21730 0.94574 1.01262 1.02089 1.21907 0.97135 0.93226 1.04074 1.20856 0.90436 0.96437 0.90342 0.87218 1.45936 1.17200 1.57231 1.15985 1.21443 0.80558 0.77217 0.91059 1.21875 1.04768 1.02483 0.93341 1.90729 1.52193 1.60603 1.42592 1.20713 0.90243 0.77295 0.81785 1.90693 1.65967 1.46936 1.41413 1.45922 1.08454 1.59098 1.22786 1.21410 0.79095 1.00921 0.97955 1.21337 0.97203 0.95462 0.96676 0.89378 1.21446 0.94229 1.01272 0.97276 1.21447 1.01228 0.93068 0.98484 1.21297 0.96731 0.96641 0.96108 0.91817 1.20886 0.97033 0.82374 0.96774 1.42736 1.77621 1.04586 1.15275 1.19067 1.33593 0.89770 0.94285 0.92877 1.25542 1.02723 0.96429 1.01053 1.69889 1.56165 1.04444 1.33032 0.85391 0.78600 0.77376 0.80334 1.20091 1.22245 1.17675 1.21508 0.94882 0.99994 0.98430 1.21584 1.01420 0.94730 0.96828 0.92194 0.93518 0.93034 0.88874 0.90903 0.74713 0.88374 0.87982 0.87767 0.74824 0.91846 0.91388 0.91655 0.90180 0.91348 0.91689 0.96024 0.96496 0.80053 0.93345 0.91712 0.93793 0.90657 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.51 71.98 0.61 -1.43 16 2 C -0.12 -1.46 5.55 30.60 0.17 -1.29 16 3 C 0.13 1.75 2.67 44.25 0.12 1.86 16 4 H 0.11 1.64 7.58 -2.39 -0.02 1.62 16 5 N -0.71 -9.35 4.90 -446.09 -2.19 -11.54 16 6 C 0.51 7.41 6.51 87.66 0.57 7.98 16 7 C -0.17 -1.09 10.39 71.23 0.74 -0.35 16 8 O -0.58 -12.85 14.24 -3.04 -0.04 -12.89 16 9 C 0.51 8.10 7.22 87.66 0.63 8.73 16 10 O -0.57 -12.66 15.84 -3.05 -0.05 -12.71 16 11 N -0.71 -8.58 5.15 -463.05 -2.38 -10.96 16 12 C 0.13 1.73 5.07 86.38 0.44 2.17 16 13 C -0.09 -1.16 2.22 -10.79 -0.02 -1.18 16 14 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 15 C -0.10 -1.53 5.20 30.60 0.16 -1.37 16 16 C -0.10 -2.06 5.20 30.60 0.16 -1.90 16 17 C -0.09 -2.36 2.23 -10.79 -0.02 -2.39 16 18 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 19 C 0.16 5.79 5.65 86.38 0.49 6.28 16 20 N -0.76 -35.36 5.13 -343.46 -1.76 -37.12 16 21 C -0.24 -13.68 10.47 84.03 0.88 -12.80 16 22 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 24 N -0.98 -63.68 13.97 21.65 0.30 -63.38 16 25 Si 0.96 45.46 27.74 68.60 1.90 47.36 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 29 C -0.11 -2.63 5.08 30.59 0.16 -2.48 16 30 C -0.11 -1.77 5.08 30.59 0.16 -1.61 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.79 5.64 -2.39 -0.01 0.77 16 33 H 0.05 0.88 7.85 -2.39 -0.02 0.86 16 34 H 0.09 0.79 7.43 -2.39 -0.02 0.78 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.41 4.72 7.63 -92.71 -0.71 4.01 16 37 H 0.10 0.23 7.91 -2.39 -0.02 0.21 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.41 3.34 7.01 -92.71 -0.65 2.69 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.37 16.21 4.71 -92.71 -0.44 15.77 16 50 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 51 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 52 H 0.04 1.26 7.18 -2.39 -0.02 1.24 16 53 H 0.07 0.98 7.18 -2.39 -0.02 0.97 16 54 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.35 417.01 0.52 -76.83 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.96 Total: 27.63 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 5.70 Total: -3.23 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -6.03 Total: -123.00 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.09 Total: -25.60 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Total: -77.35 0.52 -76.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672377570.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.190 kcal (2) G-P(sol) polarization free energy of solvation -77.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds