Wall clock time and date at job start Tue Mar 31 2020 22:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 H 1.09000 * 109.47527 * 54.99964 * 3 2 1 5 5 C 1.52998 * 109.47179 * 294.99880 * 3 2 1 6 6 C 1.53002 * 109.47345 * 174.99779 * 3 2 1 7 7 H 1.09007 * 109.46978 * 59.99890 * 6 3 2 8 8 N 1.46496 * 109.46979 * 300.00289 * 6 3 2 9 9 C 1.34773 * 119.99874 * 299.99432 * 8 6 3 10 10 C 1.50702 * 120.00003 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00449 * 0.02562 * 9 8 6 12 12 C 1.50694 * 109.47289 * 179.97438 * 6 3 2 13 13 O 1.21283 * 119.99954 * 100.00311 * 12 6 3 14 14 N 1.34773 * 120.00670 * 280.00039 * 12 6 3 15 15 C 1.46496 * 120.00554 * 180.02562 * 14 12 6 16 16 H 1.08999 * 109.20365 * 35.00322 * 15 14 12 17 17 C 1.50125 * 109.21348 * 154.36231 * 15 14 12 18 18 C 1.52525 * 105.41997 * 217.98482 * 17 15 14 19 19 C 1.46247 * 114.27364 * 270.59663 * 18 17 15 20 20 N 1.50168 * 107.53650 * 58.40375 * 19 18 17 21 21 C 1.36931 * 120.53685 * 109.56829 * 20 19 18 22 22 H 1.08005 * 119.99926 * 320.22957 * 21 20 19 23 23 C 1.38813 * 120.00345 * 140.23216 * 21 20 19 24 24 N 1.31617 * 120.00194 * 156.33992 * 23 21 20 25 25 Si 1.86804 * 119.99468 * 336.34278 * 23 21 20 26 26 H 1.48500 * 109.47030 * 95.57138 * 25 23 21 27 27 H 1.48503 * 109.46983 * 215.57248 * 25 23 21 28 28 H 1.48502 * 109.47141 * 335.57350 * 25 23 21 29 29 C 1.43427 * 118.92365 * 289.58846 * 20 19 18 30 30 C 1.54800 * 116.07575 * 91.55369 * 29 20 19 31 31 H 1.08996 * 109.47192 * 299.99775 * 1 2 3 32 32 H 1.09004 * 109.47038 * 60.00459 * 1 2 3 33 33 H 1.08998 * 109.46446 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47192 * 240.00225 * 2 1 3 35 35 H 1.09002 * 109.47547 * 119.99618 * 2 1 3 36 36 H 1.09003 * 109.47305 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47322 * 299.99744 * 5 3 2 38 38 H 1.08998 * 109.47295 * 59.99818 * 5 3 2 39 39 H 0.97001 * 119.99993 * 120.00458 * 8 6 3 40 40 H 1.09004 * 109.47272 * 359.97438 * 10 9 8 41 41 H 1.08995 * 109.47884 * 120.00094 * 10 9 8 42 42 H 1.09002 * 109.46962 * 240.00092 * 10 9 8 43 43 H 0.97004 * 119.99815 * 0.02562 * 14 12 6 44 44 H 1.09000 * 110.24445 * 336.95843 * 17 15 14 45 45 H 1.09002 * 110.25006 * 98.86534 * 17 15 14 46 46 H 1.08998 * 108.52503 * 31.83090 * 18 17 15 47 47 H 1.08996 * 108.52692 * 149.35436 * 18 17 15 48 48 H 1.08998 * 109.84272 * 177.91608 * 19 18 17 49 49 H 1.09001 * 109.83822 * 298.82722 * 19 18 17 50 50 H 0.97000 * 119.99595 * 179.97438 * 24 23 21 51 51 H 1.08999 * 108.16313 * 213.28386 * 29 20 19 52 52 H 1.09003 * 108.16608 * 330.06413 * 29 20 19 53 53 H 1.08996 * 109.35294 * 198.42360 * 30 29 20 54 54 H 1.08997 * 109.31308 * 78.86403 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4444 0.1258 7 1 3.9995 0.9054 -0.7161 8 7 3.9523 0.7895 1.3775 9 6 3.5278 1.2849 2.5568 10 6 3.9269 0.6115 3.8446 11 8 2.8246 2.2727 2.5818 12 6 4.0671 2.8652 0.1251 13 8 4.3556 3.4069 1.1713 14 7 4.1959 3.5340 -1.0378 15 6 4.6847 4.9150 -1.0384 16 1 5.4283 5.0325 -0.2501 17 6 5.3204 5.2135 -2.3653 18 6 6.5290 6.0883 -2.0484 19 6 6.2442 7.5226 -2.0279 20 7 5.1762 7.7572 -0.9987 21 6 5.4704 8.3966 0.1759 22 1 6.4004 8.1903 0.6848 23 6 4.5733 9.3099 0.7126 24 7 4.5939 9.5726 2.0021 25 14 3.3370 10.1661 -0.3955 26 1 2.0468 9.4318 -0.3578 27 1 3.1284 11.5580 0.0782 28 1 3.8529 10.1891 -1.7879 29 6 3.8432 7.3003 -1.2657 30 6 3.5000 5.8750 -0.7685 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9981 3.1544 -1.3072 37 1 2.0699 1.5875 -2.1492 38 1 0.5489 2.1252 -1.3970 39 1 4.5146 -0.0007 1.3576 40 1 4.5537 -0.2525 3.6237 41 1 4.4823 1.3144 4.4654 42 1 3.0330 0.2850 4.3761 43 1 3.9649 3.1010 -1.8745 44 1 5.6395 4.2893 -2.8471 45 1 4.6211 5.7503 -3.0064 46 1 6.9196 5.7989 -1.0729 47 1 7.2992 5.8988 -2.7960 48 1 7.1447 8.0748 -1.7594 49 1 5.8919 7.8438 -3.0082 50 1 3.9672 10.2111 2.3770 51 1 3.1456 7.9986 -0.8033 52 1 3.6838 7.3281 -2.3436 53 1 2.6153 5.5130 -1.2922 54 1 3.2966 5.9057 0.3018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673407765.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:44 Heat of formation + Delta-G solvation = -78.115484 kcal Electronic energy + Delta-G solvation = -32437.227558 eV Core-core repulsion = 28408.596620 eV Total energy + Delta-G solvation = -4028.630938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.80314 -40.32579 -39.13327 -37.54622 -36.29994 -34.84238 -34.54014 -33.14270 -32.54946 -31.34970 -30.19870 -28.19569 -27.31411 -25.88241 -25.33371 -24.47988 -22.37609 -21.87965 -21.47792 -21.04714 -20.37707 -18.57308 -18.48347 -17.92971 -17.49965 -17.10304 -16.71549 -16.37475 -16.13656 -15.94504 -15.67400 -15.39179 -14.99551 -14.90224 -14.74665 -14.60940 -14.40462 -14.18673 -13.81699 -13.73194 -13.58803 -13.44544 -13.29149 -13.20727 -12.95806 -12.88476 -12.70815 -12.48439 -12.38784 -12.23030 -12.06327 -11.98384 -11.80588 -11.65813 -11.60266 -11.50894 -11.47279 -11.29176 -11.04765 -10.61133 -10.54891 -9.88990 -9.85423 -8.69089 -8.23764 -5.63332 1.28051 1.34908 1.48819 1.69006 1.80642 2.21295 2.40289 2.53777 2.98093 3.34516 3.67992 3.79513 3.86181 3.90696 4.00471 4.08884 4.18242 4.23463 4.24786 4.35878 4.40524 4.46409 4.55001 4.56765 4.63298 4.67287 4.67738 4.72045 4.78988 4.82320 4.89921 4.96475 5.03498 5.07689 5.09311 5.13020 5.15782 5.21148 5.24396 5.28572 5.37615 5.38976 5.43433 5.53047 5.57797 5.60036 5.70179 5.92804 6.14301 6.67988 6.71519 7.00508 7.42921 7.55097 7.63012 8.06566 8.96597 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003469 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.665512 B = 8069.307585 C = 8423.486313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.100 4.100 4 H 0.046 0.954 5 C -0.159 4.159 6 C 0.143 3.857 7 H 0.156 0.844 8 N -0.708 5.708 9 C 0.500 3.500 10 C -0.162 4.162 11 O -0.573 6.573 12 C 0.485 3.515 13 O -0.569 6.569 14 N -0.712 5.712 15 C 0.170 3.830 16 H 0.036 0.964 17 C -0.105 4.105 18 C -0.127 4.127 19 C 0.133 3.867 20 N -0.612 5.612 21 C -0.258 4.258 22 H 0.025 0.975 23 C -0.024 4.024 24 N -0.952 5.952 25 Si 0.952 3.048 26 H -0.284 1.284 27 H -0.305 1.305 28 H -0.245 1.245 29 C 0.148 3.852 30 C -0.138 4.138 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.423 0.577 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.415 0.585 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.027 0.973 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.261 0.739 51 H 0.011 0.989 52 H 0.073 0.927 53 H 0.079 0.921 54 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -28.054 -13.979 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.120 4.120 4 H 0.064 0.936 5 C -0.216 4.216 6 C 0.034 3.966 7 H 0.173 0.827 8 N -0.363 5.363 9 C 0.288 3.712 10 C -0.222 4.222 11 O -0.451 6.451 12 C 0.271 3.729 13 O -0.445 6.445 14 N -0.367 5.367 15 C 0.065 3.935 16 H 0.054 0.946 17 C -0.143 4.143 18 C -0.166 4.166 19 C 0.011 3.989 20 N -0.336 5.336 21 C -0.388 4.388 22 H 0.043 0.957 23 C -0.220 4.220 24 N -0.596 5.596 25 Si 0.780 3.220 26 H -0.212 1.212 27 H -0.234 1.234 28 H -0.168 1.168 29 C 0.020 3.980 30 C -0.180 4.180 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.254 0.746 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.046 0.954 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.070 0.930 51 H 0.029 0.971 52 H 0.091 0.909 53 H 0.097 0.903 54 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -3.331 -26.873 -13.082 30.074 hybrid contribution -0.478 0.884 0.853 1.318 sum -3.809 -25.989 -12.229 28.974 Atomic orbital electron populations 1.21809 0.95992 1.02033 1.01231 1.21454 0.95787 0.93596 1.03176 1.21412 0.92154 0.98950 0.99482 0.93563 1.22075 1.02649 1.00364 0.96542 1.21095 0.96686 0.89361 0.89482 0.82674 1.45628 1.54198 1.32139 1.04296 1.21436 0.79164 0.83399 0.87170 1.21831 1.04582 1.02334 0.93431 1.90751 1.39305 1.27093 1.87969 1.21789 0.77263 0.90204 0.83634 1.90809 1.49788 1.70596 1.33341 1.46303 1.67363 1.13929 1.09078 1.20716 0.94262 0.79890 0.98584 0.94582 1.21290 0.97363 1.01087 0.94563 1.20754 0.98656 0.96314 1.00878 1.20680 0.91426 0.95321 0.91479 1.44328 1.06810 1.65255 1.17224 1.18546 1.05095 1.17128 0.98034 0.95710 1.26247 1.01111 0.98222 0.96441 1.70075 1.40059 1.36790 1.12694 0.85693 0.78656 0.76571 0.81118 1.21190 1.23366 1.16813 1.20703 0.86487 0.92270 0.98513 1.23064 0.98580 0.97860 0.98495 0.95229 0.91894 0.91314 0.88831 0.92134 0.93775 0.88552 0.91693 0.73877 0.86857 0.90287 0.88127 0.74626 0.87653 0.89318 0.95390 0.89164 0.92704 0.91620 0.93001 0.97146 0.90905 0.90286 0.98239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 71.98 0.70 -1.52 16 2 C -0.10 -1.36 5.32 30.59 0.16 -1.19 16 3 C -0.10 -2.02 1.75 -10.79 -0.02 -2.04 16 4 H 0.05 1.48 6.17 -2.39 -0.01 1.46 16 5 C -0.16 -2.59 7.97 71.98 0.57 -2.02 16 6 C 0.14 2.83 2.61 44.24 0.12 2.94 16 7 H 0.16 1.39 8.14 -2.38 -0.02 1.37 16 8 N -0.71 -13.54 4.35 -446.11 -1.94 -15.48 16 9 C 0.50 14.02 6.71 87.66 0.59 14.61 16 10 C -0.16 -2.97 10.39 71.24 0.74 -2.23 16 11 O -0.57 -24.01 12.99 19.42 0.25 -23.75 16 12 C 0.49 15.55 6.25 87.66 0.55 16.10 16 13 O -0.57 -26.79 13.34 19.41 0.26 -26.53 16 14 N -0.71 -18.80 3.65 -443.96 -1.62 -20.42 16 15 C 0.17 5.96 2.23 44.70 0.10 6.06 16 16 H 0.04 1.70 6.25 -2.39 -0.01 1.68 16 17 C -0.11 -2.66 5.33 29.51 0.16 -2.50 16 18 C -0.13 -3.87 5.20 28.36 0.15 -3.72 16 19 C 0.13 4.94 6.11 83.58 0.51 5.45 16 20 N -0.61 -29.91 2.14 -708.04 -1.51 -31.42 16 21 C -0.26 -15.87 9.92 84.03 0.83 -15.03 16 22 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 23 C -0.02 -1.52 5.28 84.86 0.45 -1.07 16 24 N -0.95 -65.23 13.97 21.65 0.30 -64.92 16 25 Si 0.95 49.57 25.26 68.60 1.73 51.30 16 26 H -0.28 -14.56 6.73 99.48 0.67 -13.89 16 27 H -0.31 -15.89 7.11 99.48 0.71 -15.19 16 28 H -0.24 -11.62 7.11 99.48 0.71 -10.91 16 29 C 0.15 6.57 4.22 87.56 0.37 6.94 16 30 C -0.14 -5.82 5.98 31.84 0.19 -5.63 16 31 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.83 6.57 -2.39 -0.02 0.82 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.83 7.45 -2.39 -0.02 0.81 16 36 H 0.04 0.94 5.94 -2.39 -0.01 0.93 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.06 6.56 -2.39 -0.02 1.04 16 39 H 0.42 4.02 8.67 -92.71 -0.80 3.22 16 40 H 0.11 1.04 7.91 -2.38 -0.02 1.02 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.42 6.69 7.35 -92.71 -0.68 6.01 16 44 H 0.11 1.79 7.86 -2.39 -0.02 1.77 16 45 H 0.09 2.03 6.29 -2.39 -0.02 2.02 16 46 H 0.03 1.06 6.93 -2.39 -0.02 1.04 16 47 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.05 2.14 7.99 -2.39 -0.02 2.12 16 49 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 50 H 0.26 16.91 8.31 -92.71 -0.77 16.14 16 51 H 0.01 0.54 3.40 -2.39 -0.01 0.53 16 52 H 0.07 2.61 6.88 -2.39 -0.02 2.59 16 53 H 0.08 2.77 8.12 -2.39 -0.02 2.76 16 54 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -100.14 399.69 3.02 -97.12 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.61 Total: 18.98 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.16 Total: 15.14 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -4.77 Total: -132.25 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: 0.51 Total: -50.29 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.73 Total: 51.30 kcal Total: -100.14 3.02 -97.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673407765.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.003 kcal (2) G-P(sol) polarization free energy of solvation -100.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds