Wall clock time and date at job start Tue Mar 31 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46882 * 2 1 4 4 H 1.08994 * 109.47365 * 55.00048 * 3 2 1 5 5 C 1.52998 * 109.47114 * 294.99479 * 3 2 1 6 6 C 1.50704 * 109.47030 * 175.00070 * 3 2 1 7 7 O 1.21286 * 120.00136 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99902 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99916 * 179.97438 * 8 6 3 10 10 H 1.09007 * 109.46722 * 324.99788 * 9 8 6 11 11 C 1.53003 * 109.47177 * 84.99156 * 9 8 6 12 12 C 1.52998 * 109.47116 * 204.99395 * 9 8 6 13 13 C 1.53094 * 109.52611 * 299.67811 * 12 9 8 14 14 C 1.53035 * 109.28965 * 182.43275 * 13 12 9 15 15 N 1.46852 * 109.51457 * 59.18391 * 14 13 12 16 16 C 1.46896 * 111.00167 * 174.16233 * 15 14 13 17 17 C 1.50696 * 109.47313 * 293.64619 * 16 15 14 18 18 O 1.21289 * 120.00215 * 353.78036 * 17 16 15 19 19 N 1.34778 * 120.00058 * 173.78358 * 17 16 15 20 20 C 1.37099 * 120.00300 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99316 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00204 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99966 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47304 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47161 * 120.00072 * 24 22 20 27 27 H 1.48505 * 109.47120 * 239.99557 * 24 22 20 28 28 C 1.46851 * 111.19706 * 298.26605 * 15 14 13 29 29 C 1.53033 * 109.52517 * 61.73726 * 28 15 14 30 30 H 1.09000 * 109.46599 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47091 * 300.00001 * 1 2 3 32 32 H 1.08997 * 109.47028 * 60.00292 * 1 2 3 33 33 H 1.08994 * 109.47321 * 239.99517 * 2 1 3 34 34 H 1.08997 * 109.47028 * 119.99708 * 2 1 3 35 35 H 1.09002 * 109.46603 * 60.00449 * 5 3 2 36 36 H 1.09000 * 109.47192 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.47469 * 300.00504 * 5 3 2 38 38 H 0.96993 * 119.99925 * 359.97438 * 8 6 3 39 39 H 1.08997 * 109.46911 * 180.02562 * 11 9 8 40 40 H 1.08996 * 109.47270 * 300.00615 * 11 9 8 41 41 H 1.09007 * 109.46870 * 60.00118 * 11 9 8 42 42 H 1.09002 * 109.57012 * 59.84351 * 12 9 8 43 43 H 1.08998 * 109.48983 * 62.49392 * 13 12 9 44 44 H 1.09004 * 109.50562 * 302.38323 * 13 12 9 45 45 H 1.08993 * 109.46349 * 299.17800 * 14 13 12 46 46 H 1.08996 * 109.46188 * 179.19232 * 14 13 12 47 47 H 1.09006 * 109.46960 * 53.64935 * 16 15 14 48 48 H 1.09008 * 109.47110 * 173.64231 * 16 15 14 49 49 H 0.97002 * 119.99598 * 359.97438 * 19 17 16 50 50 H 0.97006 * 119.99491 * 180.02562 * 23 22 20 51 51 H 1.09002 * 109.45865 * 181.75813 * 28 15 14 52 52 H 1.08996 * 109.46132 * 301.73276 * 28 15 14 53 53 H 1.09006 * 109.50298 * 60.76335 * 29 28 15 54 54 H 1.09001 * 109.50119 * 180.87543 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4444 0.1238 7 8 4.1451 0.3952 0.2046 8 7 4.2148 2.6119 0.1458 9 6 5.6749 2.6137 0.2667 10 1 5.9873 1.7896 0.9083 11 6 6.3016 2.4471 -1.1190 12 6 6.1343 3.9388 0.8783 13 6 5.7031 5.0965 -0.0259 14 6 6.2176 6.4136 0.5592 15 7 7.6819 6.3669 0.6598 16 6 8.2219 7.6643 1.0875 17 6 7.9756 8.6903 0.0116 18 8 7.5090 8.3505 -1.0551 19 7 8.2738 9.9856 0.2347 20 6 8.0502 10.9190 -0.7443 21 1 7.6355 10.6162 -1.6944 22 6 8.3571 12.2545 -0.5141 23 7 8.8613 12.6229 0.6422 24 14 8.0532 13.5261 -1.8483 25 1 7.4845 12.8594 -3.0472 26 1 7.0979 14.5480 -1.3497 27 1 9.3359 14.1817 -2.2087 28 6 8.1182 5.2924 1.5606 29 6 7.6602 3.9419 1.0053 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.5490 2.1252 -1.3969 36 1 1.9982 3.1543 -1.3072 37 1 2.0699 1.5875 -2.1491 38 1 3.7325 3.4509 0.0816 39 1 7.3879 2.4479 -1.0290 40 1 5.9743 1.5031 -1.5547 41 1 5.9892 3.2711 -1.7606 42 1 5.6865 4.0604 1.8646 43 1 4.6151 5.1253 -0.0858 44 1 6.1194 4.9540 -1.0232 45 1 5.7901 6.5621 1.5507 46 1 5.9243 7.2385 -0.0901 47 1 7.7289 7.9774 2.0079 48 1 9.2938 7.5718 1.2629 49 1 8.6466 10.2575 1.0879 50 1 9.0753 13.5553 0.8030 51 1 9.2054 5.3031 1.6388 52 1 7.6816 5.4460 2.5474 53 1 8.1073 3.7812 0.0243 54 1 7.9708 3.1459 1.6822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677350736.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:21 Heat of formation + Delta-G solvation = -117.296737 kcal Electronic energy + Delta-G solvation = -30255.010025 eV Core-core repulsion = 26224.680061 eV Total energy + Delta-G solvation = -4030.329965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36453 -40.55556 -39.45739 -37.16027 -36.27097 -35.85740 -34.00814 -33.22665 -31.77509 -31.35751 -30.08146 -28.57748 -26.63940 -26.22947 -25.02172 -24.25224 -23.07142 -21.84785 -20.98196 -20.71287 -20.03578 -19.84943 -18.19154 -17.71309 -17.21386 -16.69804 -16.51624 -16.38571 -16.32857 -15.73123 -15.67626 -15.43451 -15.30984 -15.10672 -14.87880 -14.44092 -14.31359 -14.13034 -13.83882 -13.63357 -13.48359 -13.42407 -13.20417 -12.98173 -12.89462 -12.80990 -12.60419 -12.54709 -12.51930 -12.47814 -12.38222 -12.11324 -11.84137 -11.72406 -11.59948 -11.58841 -11.50827 -11.33435 -11.09881 -10.66383 -10.23551 -10.06005 -9.97458 -9.12445 -8.45133 -5.93321 1.36927 1.42092 1.56043 1.67075 2.08538 2.22844 2.29380 2.81519 3.22070 3.41936 3.63315 3.72531 3.78810 3.87147 3.91721 4.00181 4.21399 4.27851 4.33952 4.37375 4.39649 4.44630 4.51707 4.52728 4.53091 4.60417 4.62112 4.63758 4.73205 4.77719 4.83566 4.90686 4.94979 4.99379 5.02628 5.04836 5.08231 5.12155 5.21346 5.22274 5.25485 5.30188 5.37511 5.42638 5.49281 5.54237 5.59589 5.94258 6.15033 6.32400 6.58130 6.63227 7.15444 7.28277 7.59572 8.15588 8.72543 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.001996 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.971805 B =14025.042413 C =15027.954260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.107 4.107 4 H 0.117 0.883 5 C -0.144 4.144 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.716 5.716 9 C 0.155 3.845 10 H 0.077 0.923 11 C -0.161 4.161 12 C -0.083 4.083 13 C -0.101 4.101 14 C 0.058 3.942 15 N -0.533 5.533 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.056 3.944 29 C -0.106 4.106 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.395 0.605 50 H 0.276 0.724 51 H 0.083 0.917 52 H 0.041 0.959 53 H 0.070 0.930 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.310 -20.685 4.404 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.128 4.128 4 H 0.135 0.865 5 C -0.201 4.201 6 C 0.300 3.700 7 O -0.465 6.465 8 N -0.368 5.368 9 C 0.050 3.950 10 H 0.095 0.905 11 C -0.219 4.219 12 C -0.102 4.102 13 C -0.139 4.139 14 C -0.070 4.070 15 N -0.258 5.258 16 C -0.074 4.074 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.215 5.215 20 C -0.459 4.459 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.071 4.071 29 C -0.144 4.144 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.247 0.753 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.126 0.874 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.060 0.940 53 H 0.089 0.911 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.944 -21.569 3.358 24.883 hybrid contribution -0.063 1.607 0.516 1.689 sum -12.007 -19.963 3.874 23.615 Atomic orbital electron populations 1.21817 0.93681 1.02363 1.02779 1.21304 0.96819 0.94180 1.01912 1.21408 0.89727 0.99605 1.02101 0.86534 1.21842 1.03465 1.00321 0.94502 1.21261 0.91162 0.83140 0.74391 1.90669 1.71454 1.32927 1.51471 1.46170 1.07597 1.09019 1.74031 1.20819 0.79630 0.97643 0.96873 0.90533 1.22217 1.01689 1.01131 0.96868 1.21375 0.96859 0.92741 0.99209 1.21591 1.00252 0.92535 0.99539 1.22056 0.86906 0.99075 0.98925 1.61470 1.10583 1.02825 1.50957 1.21717 1.02252 0.88945 0.94447 1.20796 0.82868 0.83390 0.89980 1.90475 1.49955 1.80580 1.28760 1.41966 1.57124 1.06024 1.16351 1.19676 1.41187 0.88292 0.96708 0.90344 1.26016 0.96388 0.99354 0.99635 1.69685 1.43799 1.18967 1.23845 0.84888 0.78234 0.77563 0.77758 1.19797 1.19644 1.19754 1.22188 1.01002 0.90589 0.93361 1.21644 0.94123 0.96113 1.02557 0.92327 0.91798 0.91463 0.92918 0.92805 0.89437 0.91278 0.93196 0.75287 0.90710 0.93921 0.92115 0.89998 0.90404 0.91790 0.94925 0.92804 0.91913 0.87389 0.77142 0.91411 0.89823 0.94039 0.91103 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.98 0.70 -0.76 16 2 C -0.10 -1.54 4.75 30.60 0.15 -1.40 16 3 C -0.11 -1.43 2.72 -11.54 -0.03 -1.46 16 4 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.14 -1.52 8.84 71.98 0.64 -0.89 16 6 C 0.51 10.20 7.12 87.66 0.62 10.83 16 7 O -0.59 -16.58 15.58 -3.05 -0.05 -16.63 16 8 N -0.72 -11.98 4.89 -442.51 -2.17 -14.15 16 9 C 0.15 2.90 2.41 44.99 0.11 3.00 16 10 H 0.08 1.63 7.58 -2.38 -0.02 1.61 16 11 C -0.16 -3.28 8.78 71.98 0.63 -2.65 16 12 C -0.08 -1.50 2.25 -10.72 -0.02 -1.52 16 13 C -0.10 -2.28 4.87 30.64 0.15 -2.13 16 14 C 0.06 1.73 5.12 86.32 0.44 2.17 16 15 N -0.53 -16.41 4.35 -900.94 -3.92 -20.32 16 16 C 0.06 1.96 5.45 85.56 0.47 2.43 16 17 C 0.44 20.81 7.31 87.66 0.64 21.45 16 18 O -0.61 -33.29 14.28 -3.06 -0.04 -33.34 16 19 N -0.58 -29.42 5.29 -306.99 -1.62 -31.04 16 20 C -0.33 -18.58 9.68 84.04 0.81 -17.77 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 23 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 24 Si 0.99 42.81 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 C 0.06 1.23 5.46 86.32 0.47 1.70 16 29 C -0.11 -1.99 5.09 30.64 0.16 -1.83 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.54 6.56 -2.39 -0.02 0.52 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.96 7.95 -2.39 -0.02 0.94 16 35 H 0.09 0.65 6.56 -2.39 -0.02 0.63 16 36 H 0.07 0.63 7.57 -2.39 -0.02 0.61 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.41 5.20 6.35 -92.71 -0.59 4.61 16 39 H 0.07 1.44 6.38 -2.39 -0.02 1.43 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.28 6.37 -2.38 -0.02 1.26 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.40 6.62 -2.39 -0.02 1.38 16 44 H 0.06 1.69 6.31 -2.39 -0.02 1.68 16 45 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.05 2.08 6.05 -2.39 -0.01 2.07 16 47 H 0.06 1.92 8.12 -2.38 -0.02 1.90 16 48 H 0.11 3.26 7.98 -2.38 -0.02 3.24 16 49 H 0.39 19.19 7.90 -92.71 -0.73 18.46 16 50 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 51 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 52 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 1.48 6.32 -2.38 -0.02 1.47 16 54 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -71.55 412.84 0.49 -71.07 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -0.42 Total: 38.01 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.39 Total: 10.87 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -7.42 Total: -114.82 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.09 Total: -49.96 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.55 0.49 -71.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677350736.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.229 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds