Wall clock time and date at job start Wed Apr 1 2020 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46692 * 2 1 4 4 N 1.46502 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99871 * 264.60016 * 4 3 2 6 6 O 1.21282 * 119.99713 * 175.43259 * 5 4 3 7 7 C 1.50703 * 120.00180 * 355.43498 * 5 4 3 8 8 H 1.09004 * 109.50666 * 51.42375 * 7 5 4 9 9 C 1.53102 * 109.50439 * 291.30172 * 7 5 4 10 10 N 1.47007 * 109.25593 * 183.21627 * 9 7 5 11 11 C 1.46900 * 110.99907 * 182.38752 * 10 9 7 12 12 C 1.47011 * 110.75413 * 58.61486 * 10 9 7 13 13 C 1.53097 * 109.25933 * 301.37904 * 12 10 9 14 14 O 1.43007 * 109.50579 * 171.51704 * 7 5 4 15 15 C 1.46494 * 120.00156 * 84.59960 * 4 3 2 16 16 C 1.53044 * 109.46214 * 239.99973 * 15 4 3 17 17 C 1.53195 * 109.33798 * 178.59817 * 16 15 4 18 18 N 1.46997 * 108.73879 * 54.62297 * 17 16 15 19 19 C 1.36933 * 120.61349 * 126.38570 * 18 17 16 20 20 H 1.08002 * 120.00015 * 208.15736 * 19 18 17 21 21 C 1.38808 * 120.00248 * 28.15701 * 19 18 17 22 22 N 1.31619 * 120.00017 * 15.87843 * 21 19 18 23 23 Si 1.86794 * 120.00424 * 195.88158 * 21 19 18 24 24 H 1.48498 * 109.47300 * 59.99568 * 23 21 19 25 25 H 1.48499 * 109.47451 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47062 * 299.99823 * 23 21 19 27 27 C 1.46926 * 118.75485 * 306.40639 * 18 17 16 28 28 C 1.53039 * 109.46053 * 119.93347 * 15 4 3 29 29 H 1.09008 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47211 * 299.99219 * 1 2 3 31 31 H 1.08992 * 109.47654 * 59.99976 * 1 2 3 32 32 H 1.09004 * 109.46840 * 240.00394 * 2 1 3 33 33 H 1.08994 * 109.47274 * 120.00395 * 2 1 3 34 34 H 1.09004 * 109.47156 * 60.00587 * 3 2 1 35 35 H 1.08994 * 109.47584 * 300.00206 * 3 2 1 36 36 H 1.09003 * 109.50331 * 303.14795 * 9 7 5 37 37 H 1.09000 * 109.50716 * 63.27567 * 9 7 5 38 38 H 1.08999 * 109.47652 * 300.32127 * 11 10 9 39 39 H 1.09004 * 109.46984 * 60.32580 * 11 10 9 40 40 H 1.09000 * 109.47325 * 180.31177 * 11 10 9 41 41 H 1.09003 * 109.50682 * 181.45037 * 12 10 9 42 42 H 1.08996 * 109.51131 * 61.32110 * 12 10 9 43 43 H 1.08991 * 109.50978 * 296.92016 * 13 12 10 44 44 H 1.08997 * 109.50647 * 176.77945 * 13 12 10 45 45 H 1.08996 * 109.45042 * 359.96817 * 15 4 3 46 46 H 1.08999 * 109.49673 * 298.56384 * 16 15 4 47 47 H 1.08999 * 109.49455 * 58.63372 * 16 15 4 48 48 H 1.08997 * 109.58640 * 174.43733 * 17 16 15 49 49 H 1.08997 * 109.58620 * 294.86656 * 17 16 15 50 50 H 0.97003 * 120.00359 * 179.97438 * 22 21 19 51 51 H 1.08990 * 109.58784 * 293.81984 * 27 18 17 52 52 H 1.09003 * 109.58733 * 173.39474 * 27 18 17 53 53 H 1.09009 * 109.49662 * 301.33776 * 28 15 4 54 54 H 1.08995 * 109.50057 * 61.40032 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1793 1.5523 1.1612 6 8 5.3892 1.4692 1.1702 7 6 3.4299 1.7781 2.4490 8 1 2.6395 1.0337 2.5456 9 6 2.8149 3.1801 2.4435 10 7 2.1510 3.4235 3.7323 11 6 1.4978 4.7391 3.7479 12 6 3.1063 3.2965 4.8425 13 6 3.7183 1.8933 4.8241 14 8 4.3319 1.6630 3.5528 15 6 4.2369 1.3234 -1.2640 16 6 5.1168 0.0717 -1.2274 17 6 5.8541 -0.0693 -2.5628 18 7 6.5867 1.1764 -2.8315 19 6 7.9283 1.1514 -3.1046 20 1 8.5453 2.0033 -2.8596 21 6 8.4954 0.0310 -3.6962 22 7 7.7274 -0.8669 -4.2761 23 14 10.3485 -0.2025 -3.6692 24 1 10.8195 -0.2626 -2.2622 25 1 10.6981 -1.4685 -4.3622 26 1 11.0012 0.9377 -4.3614 27 6 5.8526 2.4488 -2.8012 28 6 5.1153 2.5607 -1.4630 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6766 1.9564 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.5998 3.9213 2.2927 37 1 2.0843 3.2539 1.6380 38 1 2.2430 5.5169 3.5811 39 1 0.7461 4.7809 2.9596 40 1 1.0192 4.8958 4.7147 41 1 2.5883 3.4551 5.7884 42 1 3.8958 4.0394 4.7302 43 1 2.9360 1.1527 4.9901 44 1 4.4690 1.8132 5.6103 45 1 3.5280 1.2450 -2.0882 46 1 5.8423 0.1605 -0.4188 47 1 4.4930 -0.8067 -1.0617 48 1 6.5555 -0.9017 -2.5068 49 1 5.1337 -0.2488 -3.3608 50 1 8.1237 -1.6497 -4.6898 51 1 5.1322 2.4745 -3.6186 52 1 6.5533 3.2775 -2.9027 53 1 4.4904 3.4539 -1.4656 54 1 5.8404 2.6264 -0.6519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690134428.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:42 Heat of formation + Delta-G solvation = -62.939062 kcal Electronic energy + Delta-G solvation = -32368.599878 eV Core-core repulsion = 28340.627039 eV Total energy + Delta-G solvation = -4027.972839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87048 -40.25441 -38.56779 -37.34590 -36.64049 -34.98224 -33.49431 -32.83387 -31.68927 -31.11631 -29.75280 -27.36210 -27.08982 -25.67732 -25.16760 -23.89877 -23.81266 -22.63608 -21.59531 -21.25834 -20.12810 -18.91767 -17.94032 -17.90224 -17.21295 -16.93669 -16.69855 -16.38711 -16.04664 -15.75845 -15.57133 -15.47681 -15.43509 -15.26984 -14.87938 -14.78868 -14.36802 -14.24122 -14.17698 -13.94783 -13.38701 -13.28019 -13.16882 -13.09129 -12.89436 -12.70279 -12.67446 -12.64607 -12.59793 -12.43659 -12.22811 -12.13436 -11.99857 -11.82906 -11.78252 -11.54518 -11.38964 -11.22414 -10.79751 -10.61234 -10.41193 -9.60227 -9.54193 -8.68914 -7.89216 -5.33973 1.41890 1.46329 1.50941 1.52594 1.70206 2.49163 2.69705 2.86724 3.25794 3.42943 3.62395 3.67426 3.83942 3.91083 3.95896 3.96639 4.01513 4.11656 4.20846 4.27657 4.33373 4.34516 4.46208 4.51238 4.56813 4.59710 4.61472 4.62082 4.67421 4.75962 4.78909 4.81989 4.86683 4.89063 4.93860 4.99128 5.02289 5.06810 5.14478 5.25869 5.29701 5.41366 5.48965 5.50874 5.60905 5.64861 5.74998 5.77575 5.87068 6.01651 6.38114 6.46332 7.13440 7.20616 7.84805 8.35477 9.17040 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.003204 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.258445 B = 8735.648462 C = 9610.475423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.092 3.908 4 N -0.600 5.600 5 C 0.511 3.489 6 O -0.557 6.557 7 C 0.085 3.915 8 H 0.106 0.894 9 C 0.032 3.968 10 N -0.538 5.538 11 C 0.022 3.978 12 C 0.015 3.985 13 C 0.055 3.945 14 O -0.394 6.394 15 C 0.172 3.828 16 C -0.139 4.139 17 C 0.185 3.815 18 N -0.611 5.611 19 C -0.265 4.265 20 H 0.058 0.942 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.272 1.272 27 C 0.148 3.852 28 C -0.132 4.132 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.028 0.972 37 H 0.119 0.881 38 H 0.022 0.978 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.032 0.968 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.008 0.992 50 H 0.251 0.749 51 H 0.030 0.970 52 H 0.050 0.950 53 H 0.081 0.919 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.358 8.800 17.326 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C -0.029 4.029 4 N -0.332 5.332 5 C 0.298 3.702 6 O -0.434 6.434 7 C 0.024 3.976 8 H 0.124 0.876 9 C -0.096 4.096 10 N -0.263 5.263 11 C -0.125 4.125 12 C -0.113 4.113 13 C -0.021 4.021 14 O -0.313 6.313 15 C 0.069 3.931 16 C -0.179 4.179 17 C 0.059 3.941 18 N -0.334 5.334 19 C -0.396 4.396 20 H 0.076 0.924 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.793 3.207 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.197 1.197 27 C 0.022 3.978 28 C -0.172 4.172 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.046 0.954 37 H 0.137 0.863 38 H 0.041 0.959 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.132 0.868 45 H 0.119 0.881 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.026 0.974 50 H 0.060 0.940 51 H 0.048 0.952 52 H 0.069 0.931 53 H 0.099 0.901 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.844 8.245 17.285 29.050 hybrid contribution 1.956 0.104 -0.326 1.986 sum -19.888 8.349 16.959 27.438 Atomic orbital electron populations 1.21661 0.92946 1.02455 1.02988 1.21941 0.97796 0.96454 1.01910 1.22296 0.76952 0.98155 1.05541 1.48183 1.07846 1.72068 1.05124 1.20667 0.87538 0.76511 0.85530 1.90737 1.16305 1.49686 1.86644 1.21957 0.91382 0.99030 0.85245 0.87610 1.22769 0.98273 0.94123 0.94483 1.62315 1.29993 1.32387 1.01651 1.22504 0.98573 0.86866 1.04592 1.22896 0.94828 0.97153 0.96386 1.23008 0.98783 0.96020 0.84326 1.88119 1.36236 1.91825 1.15099 1.20827 0.93055 0.94418 0.84811 1.22380 0.98842 0.97140 0.99569 1.20511 0.93112 0.89282 0.91173 1.44279 1.05649 1.02143 1.81346 1.19428 0.84950 1.02496 1.32677 0.92392 1.25746 1.01942 0.98977 0.97736 1.70142 1.35363 1.13032 1.39251 0.85382 0.80718 0.77216 0.77401 1.21301 1.21348 1.19712 1.20979 0.94254 0.88156 0.94393 1.22230 0.98861 0.97467 0.98666 0.92463 0.91160 0.91624 0.92785 0.92806 0.87610 0.88117 0.95351 0.86326 0.95886 0.89616 0.89278 0.86544 0.94973 0.90763 0.86777 0.88148 0.93511 0.92433 0.93224 0.97381 0.94013 0.95193 0.93134 0.90085 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.91 71.98 0.71 -0.91 16 2 C -0.14 -2.42 6.26 30.60 0.19 -2.23 16 3 C 0.09 1.55 4.86 86.38 0.42 1.97 16 4 N -0.60 -16.52 2.42 -797.68 -1.93 -18.45 16 5 C 0.51 16.77 6.45 87.66 0.57 17.33 16 6 O -0.56 -25.08 12.79 15.83 0.20 -24.88 16 7 C 0.09 2.11 2.37 29.88 0.07 2.18 16 8 H 0.11 2.18 7.53 -2.39 -0.02 2.16 16 9 C 0.03 0.61 4.59 86.32 0.40 1.00 16 10 N -0.54 -8.02 4.99 -921.45 -4.59 -12.62 16 11 C 0.02 0.22 9.61 127.69 1.23 1.45 16 12 C 0.02 0.23 5.66 86.31 0.49 0.72 16 13 C 0.05 0.99 7.01 72.01 0.50 1.50 16 14 O -0.39 -11.43 10.02 -130.11 -1.30 -12.73 16 15 C 0.17 5.90 2.51 45.02 0.11 6.02 16 16 C -0.14 -6.05 5.26 30.67 0.16 -5.89 16 17 C 0.19 9.65 5.30 86.35 0.46 10.11 16 18 N -0.61 -33.23 3.00 -698.93 -2.09 -35.32 16 19 C -0.27 -15.85 9.59 84.03 0.81 -15.05 16 20 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 21 C -0.05 -2.89 4.95 84.86 0.42 -2.47 16 22 N -0.93 -57.45 11.13 21.65 0.24 -57.21 16 23 Si 0.96 47.98 29.58 68.60 2.03 50.01 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 27 C 0.15 6.54 6.52 86.36 0.56 7.10 16 28 C -0.13 -5.00 5.27 30.67 0.16 -4.84 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.05 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.11 1.34 4.05 -2.38 -0.01 1.33 16 35 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 36 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.12 1.67 5.57 -2.39 -0.01 1.66 16 38 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.10 3.06 7.86 -2.39 -0.02 3.04 16 46 H 0.05 2.39 6.07 -2.39 -0.01 2.37 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.05 2.96 6.02 -2.39 -0.01 2.94 16 49 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 51 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 53 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 54 H 0.04 2.04 6.37 -2.39 -0.02 2.02 16 Total: -1.00 -79.41 405.33 0.66 -78.75 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.85 Total: 14.48 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 7.26 Total: 17.99 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -8.38 Total: -123.61 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.10 Total: -37.61 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -79.41 0.66 -78.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690134428.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.810 kcal (2) G-P(sol) polarization free energy of solvation -79.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds