Wall clock time and date at job start Tue Mar 31 2020 23:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46854 * 2 1 4 4 H 1.09001 * 109.46870 * 55.60616 * 3 2 1 5 5 C 1.52994 * 109.47257 * 295.60515 * 3 2 1 6 6 C 1.53001 * 109.47455 * 175.94805 * 5 3 2 7 7 C 1.52992 * 109.47416 * 175.67873 * 6 5 3 8 8 C 1.52997 * 109.46988 * 295.68036 * 6 5 3 9 9 C 1.50701 * 109.47149 * 175.60371 * 3 2 1 10 10 O 1.21283 * 119.99674 * 85.21567 * 9 3 2 11 11 N 1.34776 * 119.99887 * 265.22279 * 9 3 2 12 12 C 1.46499 * 119.99675 * 175.02407 * 11 9 3 13 13 H 1.08997 * 112.85590 * 336.19088 * 12 11 9 14 14 C 1.53783 * 113.69167 * 107.46265 * 12 11 9 15 15 C 1.53777 * 87.08399 * 139.99145 * 14 12 11 16 16 H 1.09000 * 113.69559 * 89.11985 * 15 14 12 17 17 N 1.46896 * 113.61513 * 220.02153 * 15 14 12 18 18 C 1.46902 * 110.99963 * 252.49238 * 17 15 14 19 19 C 1.50699 * 109.47332 * 179.97438 * 18 17 15 20 20 O 1.21294 * 119.99944 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99815 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99755 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00150 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99775 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00249 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99624 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46973 * 180.02562 * 26 24 22 28 28 H 1.48496 * 109.47105 * 299.99796 * 26 24 22 29 29 H 1.48496 * 109.47130 * 60.00185 * 26 24 22 30 30 C 1.53779 * 113.61381 * 204.99354 * 12 11 9 31 31 H 1.08998 * 109.46892 * 186.09213 * 1 2 3 32 32 H 1.08996 * 109.47639 * 306.09488 * 1 2 3 33 33 H 1.09003 * 109.47054 * 66.09854 * 1 2 3 34 34 H 1.08993 * 109.47469 * 240.00167 * 2 1 3 35 35 H 1.08994 * 109.47041 * 119.99743 * 2 1 3 36 36 H 1.09003 * 109.47325 * 295.95222 * 5 3 2 37 37 H 1.09007 * 109.47154 * 55.94807 * 5 3 2 38 38 H 1.09008 * 109.46787 * 55.67453 * 6 5 3 39 39 H 1.08999 * 109.47685 * 60.00035 * 7 6 5 40 40 H 1.09002 * 109.47020 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.47006 * 300.00001 * 7 6 5 42 42 H 1.09000 * 109.47126 * 186.00937 * 8 6 5 43 43 H 1.08998 * 109.47333 * 306.00927 * 8 6 5 44 44 H 1.09001 * 109.47603 * 66.01031 * 8 6 5 45 45 H 0.96998 * 120.00045 * 355.01509 * 11 9 3 46 46 H 1.08999 * 113.61550 * 25.44001 * 14 12 11 47 47 H 1.09009 * 113.61098 * 254.53529 * 14 12 11 48 48 H 1.00895 * 111.00418 * 16.44516 * 17 15 14 49 49 H 1.09000 * 109.46919 * 59.99837 * 18 17 15 50 50 H 1.08995 * 109.47415 * 300.00340 * 18 17 15 51 51 H 0.97001 * 120.00233 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99600 * 359.97438 * 25 24 22 53 53 H 1.09007 * 113.61617 * 105.38574 * 30 12 11 54 54 H 1.09004 * 113.61767 * 334.48681 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6137 1.9785 0.8480 5 6 1.6222 2.1312 -1.3008 6 6 2.0438 3.6013 -1.2579 7 6 1.7233 4.2632 -2.5994 8 6 1.2824 4.3178 -0.1408 9 6 3.5430 1.4440 0.1089 10 8 4.2234 1.3303 -0.8887 11 7 4.1311 1.5716 1.3149 12 6 5.5872 1.4638 1.4347 13 1 6.0378 0.8936 0.6224 14 6 6.2859 2.8066 1.7062 15 6 7.2017 2.0440 2.6781 16 1 8.0940 1.6319 2.2070 17 7 7.4981 2.7850 3.9113 18 6 8.8855 3.2679 3.9148 19 6 9.1518 4.0220 5.1921 20 8 8.2722 4.1456 6.0180 21 7 10.3671 4.5601 5.4161 22 6 10.6092 5.2466 6.5778 23 1 9.8262 5.3559 7.3137 24 6 11.8622 5.8008 6.8090 25 7 12.8150 5.6674 5.9139 26 14 12.1922 6.7356 8.3923 27 1 13.5945 7.2243 8.3955 28 1 11.2655 7.8921 8.4867 29 1 11.9790 5.8342 9.5529 30 6 6.0596 1.0255 2.8309 31 1 -0.3633 -1.0219 0.1091 32 1 -0.3634 0.6054 0.8303 33 1 -0.3633 0.4164 -0.9396 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.1062 1.6388 -2.1443 37 1 0.5400 2.0667 -1.4147 38 1 3.1151 3.6666 -1.0671 39 1 0.6521 4.1979 -2.7901 40 1 2.0241 5.3104 -2.5689 41 1 2.2658 3.7527 -3.3952 42 1 1.5016 5.3849 -0.1782 43 1 0.2118 4.1619 -0.2730 44 1 1.5915 3.9171 0.8246 45 1 3.5903 1.7348 2.1034 46 1 5.6456 3.5410 2.1949 47 1 6.8090 3.2098 0.8390 48 1 6.8497 3.5473 4.0399 49 1 9.0419 3.9299 3.0631 50 1 9.5658 2.4192 3.8449 51 1 11.0704 4.4616 4.7553 52 1 12.6436 5.1817 5.0920 53 1 6.4000 -0.0093 2.8719 54 1 5.3575 1.2729 3.6272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690362309.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:18 Heat of formation + Delta-G solvation = -108.584768 kcal Electronic energy + Delta-G solvation = -29438.772563 eV Core-core repulsion = 25408.820378 eV Total energy + Delta-G solvation = -4029.952185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46992 -40.45595 -39.73838 -37.64749 -36.49353 -35.52548 -35.07009 -33.58754 -33.04322 -29.90086 -28.36175 -28.04059 -26.68492 -26.48445 -25.80796 -24.11125 -22.34170 -21.71124 -21.50271 -21.09522 -20.23958 -19.97483 -18.33094 -18.07679 -17.46278 -16.93168 -16.52967 -16.32342 -16.26688 -15.93459 -15.69405 -15.50036 -15.24021 -15.03971 -14.76449 -14.57663 -14.40159 -14.21594 -13.61264 -13.47658 -13.41183 -13.35693 -13.34142 -13.16303 -13.06041 -12.86522 -12.75644 -12.48094 -12.23326 -12.17508 -12.00477 -11.95178 -11.91926 -11.89289 -11.81353 -11.52778 -11.52364 -11.41852 -11.24709 -10.65628 -10.40965 -10.12064 -10.05009 -9.32329 -8.93360 -6.07457 1.52282 1.54538 1.62387 1.82754 1.99629 2.19446 2.41289 2.83941 3.16107 3.33711 3.54467 3.59944 3.66583 3.78678 3.85959 3.88841 3.94377 4.05281 4.12197 4.21994 4.26418 4.35825 4.39515 4.45050 4.53689 4.57433 4.59391 4.73241 4.73881 4.75532 4.78644 4.87619 4.89476 4.95088 4.99178 5.03825 5.07447 5.08663 5.13140 5.17465 5.21416 5.32175 5.42572 5.45692 5.50360 5.56243 5.60425 5.93908 6.02047 6.32040 6.56804 6.58201 6.73457 7.27186 7.43386 7.91040 8.54237 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.001701 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.059716 B =16453.360473 C =16933.376529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.111 0.889 5 C -0.095 4.095 6 C -0.101 4.101 7 C -0.144 4.144 8 C -0.146 4.146 9 C 0.517 3.483 10 O -0.583 6.583 11 N -0.709 5.709 12 C 0.130 3.870 13 H 0.102 0.898 14 C -0.175 4.175 15 C 0.066 3.934 16 H 0.108 0.892 17 N -0.665 5.665 18 C 0.064 3.936 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.587 5.587 22 C -0.411 4.411 23 H 0.074 0.926 24 C -0.043 4.043 25 N -0.917 5.917 26 Si 1.134 2.866 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.273 1.273 30 C -0.120 4.120 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.413 0.587 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.346 0.654 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.385 0.615 52 H 0.259 0.741 53 H 0.084 0.916 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.097 -9.859 -15.778 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.129 0.871 5 C -0.133 4.133 6 C -0.120 4.120 7 C -0.202 4.202 8 C -0.203 4.203 9 C 0.305 3.695 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.024 3.976 13 H 0.120 0.880 14 C -0.215 4.215 15 C -0.044 4.044 16 H 0.126 0.874 17 N -0.297 5.297 18 C -0.069 4.069 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.226 5.226 22 C -0.540 4.540 23 H 0.092 0.908 24 C -0.241 4.241 25 N -0.556 5.556 26 Si 0.954 3.046 27 H -0.198 1.198 28 H -0.198 1.198 29 H -0.198 1.198 30 C -0.159 4.159 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.250 0.750 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.166 0.834 49 H 0.083 0.917 50 H 0.124 0.876 51 H 0.219 0.781 52 H 0.070 0.930 53 H 0.103 0.897 54 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.881 -9.595 -14.707 29.642 hybrid contribution -0.556 -0.011 -1.596 1.690 sum -24.437 -9.606 -16.303 30.907 Atomic orbital electron populations 1.21793 0.93377 1.02592 1.02771 1.21420 0.97738 0.93216 1.02390 1.21514 0.89679 0.99420 1.01739 0.87056 1.21575 1.02115 0.93997 0.95596 1.21129 0.99010 0.95349 0.96479 1.21792 1.02107 1.00080 0.96173 1.21888 1.00850 0.99888 0.97721 1.21241 0.91610 0.74025 0.82643 1.90671 1.66858 1.51163 1.37559 1.46017 1.07482 1.72520 1.09999 1.22170 0.80329 0.96805 0.98339 0.88007 1.24154 0.99254 0.97974 1.00161 1.22965 0.97701 0.95772 0.88000 0.87356 1.60050 1.02190 1.30937 1.36485 1.21604 0.92899 0.99076 0.93313 1.20894 0.82505 0.83367 0.90355 1.90492 1.45886 1.64345 1.49601 1.42009 1.11942 1.49403 1.19241 1.20531 1.00960 1.34207 0.98304 0.90808 1.27849 0.90541 0.98345 1.07397 1.70972 1.34476 1.40874 1.09253 0.82627 0.76666 0.75367 0.69969 1.19773 1.19764 1.19793 1.23381 0.97291 0.99842 0.95418 0.91940 0.91415 0.91978 0.92664 0.91183 0.92824 0.88819 0.94074 0.91283 0.92906 0.93620 0.93136 0.91074 0.92381 0.74998 0.89484 0.91742 0.83380 0.91666 0.87606 0.78138 0.93011 0.89732 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.50 71.98 0.68 -0.36 16 2 C -0.11 -1.19 5.39 30.60 0.16 -1.02 16 3 C -0.10 -1.28 2.05 -11.54 -0.02 -1.31 16 4 H 0.11 0.93 6.44 -2.39 -0.02 0.92 16 5 C -0.10 -1.29 3.75 30.59 0.11 -1.17 16 6 C -0.10 -1.53 2.79 -10.80 -0.03 -1.56 16 7 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 8 C -0.15 -1.69 8.78 71.98 0.63 -1.06 16 9 C 0.52 9.91 5.78 87.66 0.51 10.42 16 10 O -0.58 -16.33 15.58 -3.04 -0.05 -16.37 16 11 N -0.71 -11.25 5.36 -440.04 -2.36 -13.61 16 12 C 0.13 2.39 4.21 45.52 0.19 2.58 16 13 H 0.10 2.17 7.53 -2.39 -0.02 2.15 16 14 C -0.17 -3.54 7.50 31.12 0.23 -3.31 16 15 C 0.07 1.44 4.18 45.44 0.19 1.63 16 16 H 0.11 2.18 7.87 -2.39 -0.02 2.16 16 17 N -0.67 -19.88 6.24 -492.87 -3.08 -22.96 16 18 C 0.06 2.12 6.01 85.56 0.51 2.63 16 19 C 0.44 20.85 7.82 87.66 0.69 21.54 16 20 O -0.62 -34.16 15.78 -3.07 -0.05 -34.21 16 21 N -0.59 -29.89 5.28 -306.98 -1.62 -31.51 16 22 C -0.41 -23.56 9.68 84.04 0.81 -22.74 16 23 H 0.07 4.53 7.16 -2.91 -0.02 4.51 16 24 C -0.04 -2.35 5.50 84.93 0.47 -1.89 16 25 N -0.92 -51.35 13.68 21.66 0.30 -51.06 16 26 Si 1.13 48.54 29.92 68.60 2.05 50.60 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 29 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 30 C -0.12 -2.15 7.63 31.12 0.24 -1.92 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.06 0.41 6.77 -2.39 -0.02 0.39 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.97 7.71 -2.39 -0.02 0.95 16 37 H 0.09 0.88 6.50 -2.38 -0.02 0.86 16 38 H 0.04 0.87 7.03 -2.38 -0.02 0.85 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.61 6.76 -2.39 -0.02 0.60 16 45 H 0.41 4.48 8.69 -92.71 -0.81 3.68 16 46 H 0.09 1.78 7.82 -2.39 -0.02 1.76 16 47 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.35 10.91 7.89 -89.70 -0.71 10.20 16 49 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.11 3.15 8.13 -2.39 -0.02 3.13 16 51 H 0.38 17.98 6.73 -92.71 -0.62 17.36 16 52 H 0.26 14.03 6.77 -92.71 -0.63 13.40 16 53 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 54 H 0.09 1.68 8.12 -2.38 -0.02 1.66 16 Total: -1.00 -74.78 428.57 0.15 -74.63 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -1.09 Total: 43.39 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 6.04 Total: 1.10 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -6.76 Total: -119.13 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.10 Total: -50.58 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.60 kcal Total: -74.78 0.15 -74.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690362309.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.957 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds