Wall clock time and date at job start Tue Mar 31 2020 23:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 H 1.09000 * 109.46662 * 55.00238 * 3 2 1 5 5 C 1.52996 * 109.47336 * 174.99994 * 3 2 1 6 6 N 1.46498 * 109.47059 * 175.00083 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 N 1.46499 * 109.47308 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00199 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00222 * 0.02562 * 12 11 10 14 14 C 1.50708 * 119.99958 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47113 * 300.00064 * 14 12 11 16 16 C 1.53000 * 109.46975 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.46741 * 60.00482 * 16 15 14 18 18 C 1.53001 * 109.47300 * 299.99282 * 17 16 15 19 19 C 1.52996 * 109.46781 * 180.02562 * 14 12 11 20 20 N 1.46494 * 109.47171 * 295.00630 * 3 2 1 21 21 C 1.36934 * 120.00488 * 84.99750 * 20 3 2 22 22 H 1.08003 * 119.99785 * 359.97438 * 21 20 3 23 23 C 1.38817 * 120.00391 * 179.97438 * 21 20 3 24 24 N 1.31620 * 119.99922 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99672 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47285 * 89.99825 * 25 23 21 27 27 H 1.48501 * 109.46856 * 209.99992 * 25 23 21 28 28 H 1.48500 * 109.46930 * 329.99469 * 25 23 21 29 29 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47199 * 299.99158 * 1 2 3 31 31 H 1.08995 * 109.47432 * 60.00127 * 1 2 3 32 32 H 1.08997 * 109.47199 * 240.00842 * 2 1 3 33 33 H 1.08995 * 109.47432 * 119.99873 * 2 1 3 34 34 H 1.09004 * 109.47066 * 55.00351 * 5 3 2 35 35 H 1.08994 * 109.46974 * 295.00498 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 40 40 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 41 41 H 0.97000 * 120.00069 * 0.02562 * 11 10 9 42 42 H 1.08997 * 109.46944 * 60.00243 * 14 12 11 43 43 H 1.08997 * 109.47313 * 300.00477 * 15 14 12 44 44 H 1.09001 * 109.46667 * 60.00119 * 15 14 12 45 45 H 1.08997 * 109.47123 * 300.00203 * 16 15 14 46 46 H 1.09006 * 109.46826 * 180.02562 * 16 15 14 47 47 H 1.09007 * 109.46968 * 180.02562 * 17 16 15 48 48 H 1.08997 * 109.47540 * 59.99976 * 17 16 15 49 49 H 1.08997 * 109.47391 * 300.00785 * 18 17 16 50 50 H 1.08994 * 109.47152 * 180.02562 * 18 17 16 51 51 H 1.09006 * 109.47179 * 299.99634 * 19 14 12 52 52 H 1.08997 * 109.47540 * 60.00171 * 19 14 12 53 53 H 0.97009 * 119.99912 * 264.99313 * 20 3 2 54 54 H 0.97005 * 119.99120 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4445 0.1257 6 7 4.0629 2.8170 0.0060 7 6 5.3850 3.0639 0.0919 8 8 6.1629 2.1493 0.2633 9 6 5.8970 4.4764 -0.0250 10 6 7.4213 4.4789 0.1056 11 7 7.9191 5.8520 -0.0087 12 6 9.2412 6.0989 0.0772 13 8 10.0191 5.1843 0.2486 14 6 9.7532 7.5115 -0.0398 15 6 9.3574 8.0863 -1.4014 16 6 9.8766 9.5206 -1.5199 17 6 11.4009 9.5236 -1.3886 18 6 11.7967 8.9489 -0.0270 19 6 11.2775 7.5139 0.0907 20 7 1.6523 2.0976 -1.2517 21 6 0.4155 2.6735 -1.3687 22 1 -0.2744 2.6445 -0.5382 23 6 0.0483 3.2946 -2.5546 24 7 -1.1407 3.8478 -2.6671 25 14 1.2413 3.3441 -3.9912 26 1 1.0378 2.1465 -4.8451 27 1 0.9999 4.5706 -4.7929 28 1 2.6346 3.3549 -3.4774 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9954 0.8313 -0.6660 35 1 3.8498 1.0378 1.0959 36 1 3.4408 3.5485 -0.1308 37 1 5.6151 4.8859 -0.9950 38 1 5.4631 5.0869 0.7670 39 1 7.7036 4.0693 1.0755 40 1 7.8549 3.8686 -0.6867 41 1 7.2970 6.5836 -0.1454 42 1 9.3193 8.1219 0.7522 43 1 9.7912 7.4758 -2.1934 44 1 8.2714 8.0844 -1.4948 45 1 9.4424 10.1307 -0.7279 46 1 9.5943 9.9302 -2.4898 47 1 11.7708 10.5456 -1.4726 48 1 11.8351 8.9135 -2.1806 49 1 11.3626 9.5591 0.7650 50 1 12.8826 8.9515 0.0667 51 1 11.5598 7.1043 1.0607 52 1 11.7111 6.9036 -0.7015 53 1 2.2718 2.1233 -1.9977 54 1 -1.3970 4.2821 -3.4957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698617782.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:41 Heat of formation + Delta-G solvation = -125.389290 kcal Electronic energy + Delta-G solvation = -29425.045484 eV Core-core repulsion = 25394.364600 eV Total energy + Delta-G solvation = -4030.680884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31847 -40.73243 -38.63044 -38.38857 -36.29656 -35.26442 -34.15751 -32.82682 -32.07102 -31.65372 -31.34238 -29.47211 -26.08787 -25.02434 -24.13029 -23.52575 -23.18850 -21.78244 -21.65022 -21.08922 -20.56662 -19.59011 -18.29716 -18.02305 -17.25764 -16.97233 -16.81170 -16.75142 -16.23523 -15.94574 -15.65173 -15.19413 -15.02817 -15.01222 -14.93630 -14.66663 -14.51625 -14.44457 -14.29294 -13.92307 -13.60444 -13.25563 -13.10364 -13.06945 -12.94553 -12.89209 -12.86814 -12.49142 -12.29803 -12.22994 -12.09514 -12.04036 -11.88991 -11.58195 -11.57333 -11.40900 -11.35341 -11.07492 -11.00519 -10.89471 -10.66734 -10.19015 -10.03179 -9.27895 -7.93348 -5.25674 1.40340 1.44802 1.50707 1.59343 1.62536 1.90848 2.50291 2.53831 3.38408 3.54564 3.60005 3.66650 3.77383 3.79507 3.90149 3.99836 4.04056 4.24118 4.28794 4.32769 4.33376 4.45259 4.46500 4.49769 4.55600 4.56270 4.59916 4.70829 4.76316 4.80518 4.83684 4.90482 4.98734 5.08332 5.12665 5.12919 5.17280 5.19986 5.25075 5.25996 5.33474 5.37994 5.41298 5.46161 5.54713 5.56436 5.72477 5.89261 6.28988 6.50135 6.58828 7.14978 7.21244 7.25378 7.89448 8.08453 9.27553 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.002056 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.716806 B =13613.739549 C =15169.756484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.169 3.831 4 H 0.062 0.938 5 C 0.119 3.881 6 N -0.714 5.714 7 C 0.511 3.489 8 O -0.588 6.588 9 C -0.142 4.142 10 C 0.143 3.857 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.589 6.589 14 C -0.097 4.097 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.100 4.100 20 N -0.745 5.745 21 C -0.204 4.204 22 H 0.068 0.932 23 C -0.061 4.061 24 N -0.983 5.983 25 Si 0.943 3.057 26 H -0.295 1.295 27 H -0.302 1.302 28 H -0.249 1.249 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.414 0.586 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.419 0.581 42 H 0.122 0.878 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.054 0.946 52 H 0.048 0.952 53 H 0.363 0.637 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.178 12.099 6.273 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.061 3.939 4 H 0.080 0.920 5 C -0.006 4.006 6 N -0.365 5.365 7 C 0.298 3.702 8 O -0.470 6.470 9 C -0.182 4.182 10 C 0.018 3.982 11 N -0.369 5.369 12 C 0.298 3.702 13 O -0.469 6.469 14 C -0.118 4.118 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.139 4.139 20 N -0.388 5.388 21 C -0.335 4.335 22 H 0.086 0.914 23 C -0.253 4.253 24 N -0.634 5.634 25 Si 0.772 3.228 26 H -0.222 1.222 27 H -0.229 1.229 28 H -0.173 1.173 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.257 0.743 42 H 0.140 0.860 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.073 0.927 52 H 0.067 0.933 53 H 0.196 0.804 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.047 10.864 6.589 25.446 hybrid contribution -0.412 0.168 -1.367 1.437 sum 21.634 11.031 5.223 24.840 Atomic orbital electron populations 1.21690 0.96347 1.00388 1.01642 1.21980 0.96140 0.97262 1.01624 1.20677 0.91158 0.93186 0.88863 0.92020 1.21588 0.93748 0.83255 1.01971 1.46009 1.07401 1.10628 1.72468 1.20895 0.82044 0.91783 0.75459 1.90709 1.56759 1.48164 1.51318 1.21767 0.94954 0.93790 1.07672 1.20758 0.92670 0.83229 1.01567 1.45879 1.07748 1.09538 1.73697 1.21393 0.81931 0.92251 0.74641 1.90703 1.57158 1.48440 1.50637 1.21391 0.97691 0.91046 1.01650 1.21562 1.01977 0.97178 0.94018 1.21528 0.95435 0.95260 1.03024 1.21592 0.96334 1.01303 0.96920 1.21543 1.00925 0.94486 0.98237 1.21339 0.93150 0.97754 1.01616 1.42800 1.15248 1.67602 1.13190 1.18947 0.91203 1.24980 0.98326 0.91383 1.25312 0.97953 1.01623 1.00370 1.69860 1.21671 1.44662 1.27241 0.85602 0.80514 0.76177 0.80495 1.22247 1.22936 1.17328 0.92931 0.93810 0.93500 0.92783 0.90407 0.92501 0.90124 0.74889 0.85895 0.84896 0.92677 0.93315 0.74313 0.85975 0.92891 0.89672 0.90326 0.90913 0.90781 0.92847 0.90623 0.91547 0.92683 0.93344 0.80385 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.18 71.98 0.66 -4.17 16 2 C -0.13 -3.87 5.61 30.60 0.17 -3.70 16 3 C 0.17 5.36 2.59 44.99 0.12 5.48 16 4 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 5 C 0.12 3.34 5.23 86.38 0.45 3.79 16 6 N -0.71 -18.71 5.39 -463.07 -2.49 -21.21 16 7 C 0.51 13.51 7.83 87.66 0.69 14.20 16 8 O -0.59 -20.46 15.98 -3.04 -0.05 -20.51 16 9 C -0.14 -2.44 5.81 29.85 0.17 -2.27 16 10 C 0.14 3.12 4.96 86.38 0.43 3.54 16 11 N -0.72 -11.65 5.45 -463.06 -2.52 -14.17 16 12 C 0.51 10.71 7.15 87.66 0.63 11.34 16 13 O -0.59 -18.65 15.98 -3.04 -0.05 -18.70 16 14 C -0.10 -1.29 2.53 -11.54 -0.03 -1.32 16 15 C -0.11 -1.12 5.10 30.59 0.16 -0.97 16 16 C -0.12 -0.89 5.92 30.59 0.18 -0.71 16 17 C -0.12 -1.13 5.92 30.59 0.18 -0.95 16 18 C -0.11 -1.18 5.93 30.61 0.18 -1.00 16 19 C -0.10 -1.58 4.49 30.61 0.14 -1.44 16 20 N -0.74 -29.35 4.31 -322.95 -1.39 -30.74 16 21 C -0.20 -10.05 8.24 84.04 0.69 -9.36 16 22 H 0.07 3.71 7.55 -2.91 -0.02 3.69 16 23 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 24 N -0.98 -58.94 13.97 21.65 0.30 -58.64 16 25 Si 0.94 42.35 27.74 68.60 1.90 44.25 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 27 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.25 -9.80 6.52 99.48 0.65 -9.15 16 29 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.41 10.41 8.14 -92.71 -0.75 9.66 16 37 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 40 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16 41 H 0.42 3.57 7.89 -92.71 -0.73 2.84 16 42 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.59 7.56 -2.39 -0.02 0.57 16 45 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 52 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 53 H 0.36 14.32 5.66 -92.70 -0.52 13.79 16 54 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -73.82 423.41 -0.20 -74.02 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -1.18 Total: 36.06 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.28 Total: 9.64 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -6.11 Total: -124.76 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.21 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.90 Total: 44.25 kcal Total: -73.82 -0.20 -74.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698617782.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.371 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds