Wall clock time and date at job start Tue Mar 31 2020 23:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47159 * 180.02562 * 9 7 6 11 11 C 1.34770 * 120.00354 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99818 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00429 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.47424 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47143 * 295.00049 * 14 13 11 16 16 C 1.52995 * 109.47021 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47237 * 59.99855 * 16 15 14 18 18 C 1.52999 * 109.47233 * 300.00015 * 17 16 15 19 19 C 1.52995 * 109.47021 * 59.99853 * 18 17 16 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 0.97005 * 120.00203 * 0.02562 * 10 9 7 40 40 H 1.09002 * 109.47330 * 299.99447 * 13 11 10 41 41 H 1.08996 * 109.47360 * 59.99711 * 13 11 10 42 42 H 1.09001 * 109.47028 * 54.99823 * 14 13 11 43 43 H 1.09001 * 109.46974 * 299.99807 * 15 14 13 44 44 H 1.09000 * 109.47157 * 60.00017 * 15 14 13 45 45 H 1.09001 * 109.47176 * 299.99790 * 16 15 14 46 46 H 1.09002 * 109.47091 * 179.97438 * 16 15 14 47 47 H 1.09000 * 109.47047 * 179.97438 * 17 16 15 48 48 H 1.08996 * 109.46683 * 60.00076 * 17 16 15 49 49 H 1.09001 * 109.46974 * 299.99939 * 18 17 16 50 50 H 1.08995 * 109.46655 * 180.02562 * 18 17 16 51 51 H 1.09002 * 109.47091 * 180.02562 * 19 18 17 52 52 H 1.09001 * 109.47176 * 60.00210 * 19 18 17 53 53 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 54 54 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 7 7.3581 4.4767 -0.0849 11 6 8.0395 5.6366 -0.0044 12 8 7.4441 6.6790 0.1692 13 6 9.5413 5.6386 -0.1291 14 6 10.0617 7.0719 -0.0036 15 6 9.5565 7.9031 -1.1846 16 6 10.0764 9.3365 -1.0588 17 6 11.6064 9.3261 -1.0598 18 6 12.1116 8.4949 0.1212 19 6 11.5917 7.0615 -0.0046 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.5658 5.5007 2.2897 27 1 -2.6061 3.3542 1.8525 28 1 -2.0861 4.0083 4.1289 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 7.8344 3.6431 -0.2234 40 1 9.9723 5.0247 0.6619 41 1 9.8259 5.2328 -1.0998 42 1 9.7023 7.5087 0.9282 43 1 9.9159 7.4664 -2.1164 44 1 8.4665 7.9109 -1.1835 45 1 9.7167 9.7730 -0.1270 46 1 9.7169 9.9286 -1.9004 47 1 11.9767 10.3474 -0.9706 48 1 11.9660 8.8897 -1.9916 49 1 11.7518 8.9314 1.0530 50 1 13.2015 8.4879 0.1206 51 1 11.9512 6.4694 0.8370 52 1 11.9514 6.6250 -0.9364 53 1 2.2720 2.1231 1.9978 54 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698622623.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:25 Heat of formation + Delta-G solvation = -123.426508 kcal Electronic energy + Delta-G solvation = -29479.510922 eV Core-core repulsion = 25448.915150 eV Total energy + Delta-G solvation = -4030.595772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41302 -40.60150 -39.02719 -38.44438 -35.67107 -35.37779 -34.35787 -33.65312 -31.55382 -31.42116 -30.42853 -28.91121 -27.17682 -25.40061 -24.05935 -23.48019 -22.64315 -21.85775 -21.45123 -21.17798 -20.58418 -19.46761 -18.76288 -17.69716 -17.28504 -17.16818 -16.65546 -16.56051 -16.17752 -15.99149 -15.96237 -15.49920 -15.14819 -15.02174 -14.92144 -14.69048 -14.57520 -14.36607 -14.18545 -13.90054 -13.50064 -13.26177 -13.20704 -12.99038 -12.85952 -12.72077 -12.61133 -12.48559 -12.11676 -11.97965 -11.96047 -11.83822 -11.82899 -11.55393 -11.31762 -11.30378 -11.21022 -11.16193 -10.91177 -10.87171 -10.62235 -10.28409 -10.11483 -9.07340 -8.26878 -5.22586 1.40126 1.61428 1.61801 1.69802 1.76200 1.82931 2.43964 2.74493 3.47405 3.54666 3.70243 3.73439 3.77791 3.84848 3.85405 4.04310 4.20422 4.26486 4.28500 4.31293 4.34610 4.40050 4.49003 4.50607 4.58656 4.62885 4.65016 4.69214 4.76861 4.77427 4.84238 4.88702 5.01936 5.04399 5.06001 5.13528 5.17246 5.24515 5.28495 5.32951 5.34729 5.36086 5.44016 5.47496 5.57482 5.64008 5.64933 5.73479 6.37987 6.47218 6.58515 7.00204 7.15003 7.19444 8.05162 8.16955 9.23672 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.001925 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.347055 B =14543.779786 C =15837.247458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.168 3.832 4 H 0.057 0.943 5 C 0.123 3.877 6 N -0.707 5.707 7 C 0.512 3.488 8 O -0.572 6.572 9 C 0.104 3.896 10 N -0.715 5.715 11 C 0.510 3.490 12 O -0.574 6.574 13 C -0.130 4.130 14 C -0.069 4.069 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.110 4.110 20 N -0.739 5.739 21 C -0.303 4.303 22 H 0.072 0.928 23 C -0.106 4.106 24 N -0.981 5.981 25 Si 1.119 2.881 26 H -0.289 1.289 27 H -0.274 1.274 28 H -0.303 1.303 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.417 0.583 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.072 0.928 52 H 0.075 0.925 53 H 0.358 0.642 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.962 4.231 -12.511 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.060 3.940 4 H 0.075 0.925 5 C -0.001 4.001 6 N -0.358 5.358 7 C 0.298 3.702 8 O -0.453 6.453 9 C -0.024 4.024 10 N -0.370 5.370 11 C 0.298 3.702 12 O -0.453 6.453 13 C -0.169 4.169 14 C -0.088 4.088 15 C -0.156 4.156 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.147 4.147 20 N -0.381 5.381 21 C -0.434 4.434 22 H 0.090 0.910 23 C -0.297 4.297 24 N -0.630 5.630 25 Si 0.946 3.054 26 H -0.216 1.216 27 H -0.199 1.199 28 H -0.230 1.230 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.248 0.752 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.255 0.745 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.093 0.907 53 H 0.191 0.809 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.873 5.119 -11.711 23.628 hybrid contribution 0.574 -0.911 -0.293 1.116 sum 20.447 4.207 -12.003 24.080 Atomic orbital electron populations 1.21688 0.96032 1.00547 1.01732 1.21982 0.96622 0.97243 1.01114 1.20673 0.91040 0.93223 0.89114 0.92462 1.21615 0.94132 0.82487 1.01915 1.45911 1.07093 1.10963 1.71833 1.20641 0.82576 0.91069 0.75881 1.90644 1.56280 1.46922 1.51443 1.20960 0.83101 0.93477 1.04824 1.45789 1.05927 1.11120 1.74177 1.21410 0.91648 0.82282 0.74827 1.90691 1.71854 1.32660 1.50136 1.21810 0.88598 1.00058 1.06454 1.20889 0.95998 0.93056 0.98900 1.21663 1.00562 0.95552 0.97863 1.21504 0.96454 0.96561 1.01152 1.21539 0.94675 1.00227 0.99021 1.21534 1.00715 0.95349 0.98184 1.21576 0.93035 0.97186 1.02943 1.42584 1.15809 1.67280 1.12448 1.20240 0.93261 1.29697 1.00214 0.91028 1.26811 1.08068 1.02126 0.92714 1.70968 1.08676 1.50009 1.33316 0.82695 0.71895 0.75697 0.75079 1.21618 1.19942 1.22983 0.93453 0.93313 0.92807 0.90421 0.93648 0.92718 0.89659 0.75210 0.87607 0.88833 0.74487 0.86689 0.86502 0.92664 0.91650 0.92877 0.93365 0.92218 0.91777 0.91402 0.92847 0.90750 0.90964 0.90673 0.80945 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.18 71.98 0.66 -4.09 16 2 C -0.13 -4.05 5.61 30.59 0.17 -3.87 16 3 C 0.17 5.72 2.59 44.99 0.12 5.84 16 4 H 0.06 1.97 8.08 -2.38 -0.02 1.95 16 5 C 0.12 3.70 5.23 86.38 0.45 4.15 16 6 N -0.71 -20.92 5.39 -463.06 -2.49 -23.42 16 7 C 0.51 14.64 7.90 87.66 0.69 15.34 16 8 O -0.57 -18.55 15.67 -3.05 -0.05 -18.60 16 9 C 0.10 2.62 6.15 85.63 0.53 3.15 16 10 N -0.71 -16.02 5.53 -466.80 -2.58 -18.60 16 11 C 0.51 11.71 7.54 87.66 0.66 12.38 16 12 O -0.57 -17.67 13.97 -3.06 -0.04 -17.72 16 13 C -0.13 -1.91 5.18 29.85 0.15 -1.76 16 14 C -0.07 -1.14 1.84 -10.79 -0.02 -1.16 16 15 C -0.12 -2.19 4.94 30.59 0.15 -2.04 16 16 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 17 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 18 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 19 C -0.11 -1.27 5.20 30.59 0.16 -1.11 16 20 N -0.74 -32.34 4.50 -322.94 -1.45 -33.79 16 21 C -0.30 -15.11 7.75 84.03 0.65 -14.46 16 22 H 0.07 3.50 7.32 -2.91 -0.02 3.48 16 23 C -0.11 -5.76 5.50 84.86 0.47 -5.30 16 24 N -0.98 -58.72 13.70 21.65 0.30 -58.43 16 25 Si 1.12 50.30 29.92 68.60 2.05 52.36 16 26 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 29 H 0.05 1.94 5.99 -2.38 -0.01 1.93 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 12.69 8.14 -92.71 -0.75 11.93 16 37 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.42 8.41 7.44 -92.70 -0.69 7.72 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 1.17 7.95 -2.39 -0.02 1.16 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.31 5.96 -2.39 -0.01 1.29 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.36 17.09 6.63 -92.71 -0.61 16.48 16 54 H 0.24 14.54 6.77 -92.71 -0.63 13.91 16 Total: -1.00 -66.59 421.36 0.09 -66.50 By element: Atomic # 1 Polarization: 50.06 SS G_CDS: -1.02 Total: 49.03 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.39 Total: 2.66 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -6.23 Total: -134.24 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.09 Total: -36.31 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.36 kcal Total: -66.59 0.09 -66.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698622623.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.927 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds