Wall clock time and date at job start Tue Mar 31 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46765 * 2 1 4 4 H 1.09003 * 109.47466 * 54.99466 * 3 2 1 5 5 C 1.53004 * 109.47201 * 294.99659 * 3 2 1 6 6 C 1.50701 * 109.47256 * 175.00021 * 3 2 1 7 7 O 1.21281 * 119.99686 * 4.62100 * 6 3 2 8 8 N 1.34775 * 119.99954 * 184.62239 * 6 3 2 9 9 C 1.46923 * 120.63084 * 3.64128 * 8 6 3 10 10 C 1.53197 * 108.77263 * 233.58061 * 9 8 6 11 11 C 1.53037 * 109.31462 * 305.36512 * 10 9 8 12 12 C 1.53043 * 109.53710 * 61.36408 * 11 10 9 13 13 C 1.46926 * 120.62682 * 183.61013 * 8 6 3 14 14 H 1.08998 * 109.58821 * 246.34021 * 13 8 6 15 15 C 1.53000 * 109.58907 * 6.62998 * 13 8 6 16 16 C 1.53001 * 109.46982 * 178.86529 * 15 13 8 17 17 N 1.46896 * 109.46764 * 184.34438 * 16 15 13 18 18 C 1.46905 * 111.00079 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47283 * 180.02562 * 18 17 16 20 20 O 1.21290 * 120.00242 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99950 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00213 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99596 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00008 * 179.97438 * 22 21 19 25 25 N 1.31404 * 120.00132 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99585 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47281 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46887 * 120.00569 * 26 24 22 29 29 H 1.48494 * 109.47067 * 239.99835 * 26 24 22 30 30 H 1.09003 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47489 * 299.99860 * 1 2 3 32 32 H 1.08997 * 109.46855 * 60.00772 * 1 2 3 33 33 H 1.08998 * 109.47574 * 240.00419 * 2 1 3 34 34 H 1.08991 * 109.47213 * 119.99450 * 2 1 3 35 35 H 1.08997 * 109.47148 * 305.43666 * 5 3 2 36 36 H 1.09009 * 109.46920 * 65.43526 * 5 3 2 37 37 H 1.09001 * 109.47479 * 185.43058 * 5 3 2 38 38 H 1.09001 * 109.58898 * 353.36779 * 9 8 6 39 39 H 1.08999 * 109.58903 * 113.65352 * 9 8 6 40 40 H 1.09005 * 109.49686 * 65.31730 * 10 9 8 41 41 H 1.08994 * 109.50046 * 185.41100 * 10 9 8 42 42 H 1.09000 * 109.45931 * 181.37977 * 11 10 9 43 43 H 1.08997 * 109.46221 * 301.34390 * 11 10 9 44 44 H 1.08998 * 109.49750 * 178.68043 * 12 11 10 45 45 H 1.09000 * 109.50255 * 58.58434 * 12 11 10 46 46 H 1.09001 * 109.46981 * 298.86736 * 15 13 8 47 47 H 1.09006 * 109.46701 * 58.86803 * 15 13 8 48 48 H 1.08997 * 109.47343 * 304.34702 * 16 15 13 49 49 H 1.08995 * 109.47187 * 64.34934 * 16 15 13 50 50 H 1.00903 * 111.00517 * 56.05034 * 17 16 15 51 51 H 1.09000 * 109.46928 * 300.00565 * 18 17 16 52 52 H 1.08997 * 109.47035 * 59.99993 * 18 17 16 53 53 H 0.97007 * 119.99952 * 0.02562 * 21 19 18 54 54 H 0.97001 * 120.00312 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5419 1.4445 0.1238 7 8 4.1519 0.3963 0.1198 8 7 4.2070 2.6110 0.2391 9 6 3.4774 3.8833 0.3256 10 6 4.0110 4.8319 -0.7525 11 6 5.5282 4.9659 -0.6030 12 6 6.1844 3.5969 -0.7963 13 6 5.6755 2.6343 0.2813 14 1 6.0075 2.9727 1.2627 15 6 6.2187 1.2295 0.0123 16 6 7.7483 1.2624 0.0288 17 7 8.2704 -0.0624 -0.3317 18 6 9.7395 -0.0689 -0.3256 19 6 10.2374 -1.4411 -0.7000 20 8 9.4464 -2.3268 -0.9470 21 7 11.5616 -1.6845 -0.7592 22 6 12.0147 -2.9327 -1.1002 23 1 11.3103 -3.7211 -1.3210 24 6 13.3800 -3.1835 -1.1618 25 7 14.2369 -2.2244 -0.8927 26 14 13.9971 -4.8845 -1.6258 27 1 12.8393 -5.7792 -1.8785 28 1 14.8277 -4.7918 -2.8533 29 1 14.8151 -5.4342 -0.5151 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.9882 1.5344 -2.1517 36 1 0.5494 2.2116 -1.3520 37 1 2.0795 3.1210 -1.3499 38 1 2.4142 3.7067 0.1632 39 1 3.6282 4.3247 1.3108 40 1 3.7767 4.4306 -1.7385 41 1 3.5463 5.8111 -0.6379 42 1 5.9072 5.6595 -1.3535 43 1 5.7631 5.3438 0.3920 44 1 7.2666 3.6971 -0.7130 45 1 5.9296 3.2071 -1.7819 46 1 5.8616 0.5478 0.7842 47 1 5.8732 0.8870 -0.9632 48 1 8.1036 2.0009 -0.6898 49 1 8.0952 1.5303 1.0268 50 1 7.9110 -0.3618 -1.2258 51 1 10.1090 0.6605 -1.0464 52 1 10.0998 0.1897 0.6700 53 1 12.1943 -0.9765 -0.5605 54 1 15.1901 -2.3993 -0.9360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698904724.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:00 Heat of formation + Delta-G solvation = -99.986001 kcal Electronic energy + Delta-G solvation = -30276.987389 eV Core-core repulsion = 26247.408074 eV Total energy + Delta-G solvation = -4029.579315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79582 -40.19079 -38.68710 -37.32346 -36.49777 -35.89843 -33.92326 -33.67498 -33.25416 -30.58801 -29.98720 -28.02409 -26.67853 -25.73125 -25.30452 -24.27860 -22.66736 -22.07472 -21.33631 -21.08171 -19.94094 -19.57549 -18.03209 -17.77840 -17.15055 -17.06592 -16.58682 -16.35288 -16.00281 -15.98106 -15.61336 -15.42118 -15.28405 -15.08064 -14.69932 -14.63106 -14.41742 -14.21796 -13.98781 -13.73113 -13.55334 -13.37209 -13.22344 -13.05227 -12.91370 -12.85434 -12.76355 -12.59519 -12.43761 -12.20527 -12.15042 -12.11739 -11.85379 -11.80555 -11.70123 -11.59354 -11.54685 -11.50791 -11.37700 -10.41059 -10.04703 -9.94287 -9.51262 -9.27387 -8.49273 -5.98335 1.34706 1.39658 1.54656 1.69270 2.01024 2.01486 2.27742 2.90298 3.17276 3.41877 3.59392 3.78728 3.83913 3.88478 3.97686 4.01305 4.09752 4.17780 4.26747 4.31531 4.35171 4.37847 4.47848 4.49167 4.51672 4.56384 4.59746 4.63361 4.67233 4.68674 4.74226 4.87097 4.91837 4.98683 5.00268 5.10065 5.11899 5.15254 5.21335 5.23082 5.29277 5.37758 5.37951 5.39751 5.47577 5.51376 5.76036 5.89179 6.12280 6.34794 6.50681 6.57644 7.09753 7.30289 7.52359 8.08555 8.68458 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.002023 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.773021 B =13837.567984 C =15270.584761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.104 4.104 4 H 0.118 0.882 5 C -0.148 4.148 6 C 0.501 3.499 7 O -0.571 6.571 8 N -0.607 5.607 9 C 0.093 3.907 10 C -0.133 4.133 11 C -0.117 4.117 12 C -0.130 4.130 13 C 0.151 3.849 14 H 0.081 0.919 15 C -0.090 4.090 16 C 0.057 3.943 17 N -0.688 5.688 18 C 0.067 3.933 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.995 3.005 27 H -0.276 1.276 28 H -0.268 1.268 29 H -0.269 1.269 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.045 0.955 49 H 0.077 0.923 50 H 0.339 0.661 51 H 0.068 0.932 52 H 0.105 0.895 53 H 0.397 0.603 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.275 23.140 2.395 35.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.125 4.125 4 H 0.136 0.864 5 C -0.205 4.205 6 C 0.291 3.709 7 O -0.451 6.451 8 N -0.340 5.340 9 C -0.028 4.028 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.169 4.169 13 C 0.047 3.953 14 H 0.099 0.901 15 C -0.128 4.128 16 C -0.072 4.072 17 N -0.320 5.320 18 C -0.066 4.066 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.094 0.906 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.818 3.182 27 H -0.200 1.200 28 H -0.193 1.193 29 H -0.194 1.194 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.095 0.905 50 H 0.157 0.843 51 H 0.086 0.914 52 H 0.123 0.877 53 H 0.231 0.769 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.321 21.782 2.878 34.286 hybrid contribution 1.341 -0.499 -0.954 1.720 sum -24.980 21.283 1.925 32.873 Atomic orbital electron populations 1.21786 0.93263 1.02246 1.02988 1.21317 0.97134 0.94615 1.01419 1.21398 0.89884 0.99059 1.02199 0.86374 1.22024 1.03640 1.00720 0.94108 1.21420 0.91322 0.83083 0.75074 1.90823 1.69492 1.33597 1.51186 1.48256 1.06247 1.07111 1.72405 1.22233 0.97703 0.82453 1.00394 1.21946 0.95963 1.00463 0.98709 1.21521 0.95458 0.95538 1.02981 1.22033 1.01110 0.95871 0.97846 1.21206 0.79492 0.95015 0.99576 0.90112 1.21814 0.92460 0.96138 1.02389 1.22236 0.95689 0.88190 1.01044 1.59990 1.05784 1.28188 1.38022 1.21537 0.89399 0.92714 1.02909 1.20919 0.82441 0.91487 0.82872 1.90496 1.55957 1.48788 1.55997 1.41923 1.05663 1.12299 1.61010 1.19699 0.91817 0.89502 1.45469 0.90591 1.26072 0.95196 1.03333 0.96712 1.69673 1.03222 1.34157 1.48937 0.84845 0.77968 0.76964 0.78378 1.20027 1.19296 1.19387 0.92811 0.91361 0.91154 0.93627 0.93492 0.93874 0.88988 0.90103 0.87110 0.89914 0.92049 0.88122 0.90838 0.90770 0.90194 0.93017 0.91385 0.93978 0.93745 0.90504 0.84315 0.91442 0.87742 0.76857 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.99 16 2 C -0.11 -1.94 4.72 30.60 0.14 -1.80 16 3 C -0.10 -1.52 1.88 -11.54 -0.02 -1.54 16 4 H 0.12 1.09 7.55 -2.39 -0.02 1.08 16 5 C -0.15 -1.49 8.33 71.98 0.60 -0.89 16 6 C 0.50 11.29 6.89 87.66 0.60 11.90 16 7 O -0.57 -18.98 11.47 -3.03 -0.03 -19.02 16 8 N -0.61 -10.43 2.97 -795.02 -2.36 -12.80 16 9 C 0.09 0.77 5.47 86.36 0.47 1.24 16 10 C -0.13 -0.90 5.84 30.67 0.18 -0.73 16 11 C -0.12 -1.11 5.88 30.62 0.18 -0.93 16 12 C -0.13 -2.02 4.84 30.67 0.15 -1.87 16 13 C 0.15 2.95 3.02 44.98 0.14 3.08 16 14 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 15 C -0.09 -2.56 3.43 30.59 0.10 -2.46 16 16 C 0.06 1.61 5.45 86.30 0.47 2.08 16 17 N -0.69 -26.05 6.13 -517.94 -3.17 -29.23 16 18 C 0.07 2.56 6.17 85.56 0.53 3.09 16 19 C 0.44 22.58 7.82 87.66 0.69 23.26 16 20 O -0.63 -38.02 15.78 -3.06 -0.05 -38.07 16 21 N -0.57 -31.10 5.29 -306.99 -1.62 -32.73 16 22 C -0.34 -20.01 9.68 84.04 0.81 -19.19 16 23 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -50.93 13.05 21.66 0.28 -50.65 16 26 Si 1.00 44.50 29.55 68.60 2.03 46.52 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.62 6.69 -2.39 -0.02 0.60 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.05 8.02 -2.39 -0.02 1.03 16 35 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.52 6.84 -2.38 -0.02 0.51 16 37 H 0.08 0.59 4.70 -2.39 -0.01 0.58 16 38 H 0.11 0.51 4.38 -2.39 -0.01 0.50 16 39 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.53 7.57 -2.38 -0.02 0.52 16 41 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 1.21 6.66 -2.39 -0.02 1.19 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 2.43 6.24 -2.39 -0.01 2.42 16 47 H 0.04 1.40 7.23 -2.38 -0.02 1.38 16 48 H 0.04 1.07 6.33 -2.39 -0.02 1.06 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.34 13.84 8.43 -89.69 -0.76 13.08 16 51 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 53 H 0.40 20.31 7.90 -92.70 -0.73 19.58 16 54 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -79.12 409.99 0.69 -78.42 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.58 Total: 43.56 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.21 Total: 13.98 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.88 Total: -125.40 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.08 Total: -57.09 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -79.12 0.69 -78.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698904724.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.562 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds