Wall clock time and date at job start Tue Mar 31 2020 23:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47259 * 2 1 4 4 H 1.08998 * 109.46712 * 54.99922 * 3 2 1 5 5 C 1.52995 * 109.47277 * 294.99970 * 3 2 1 6 6 C 1.50701 * 109.47000 * 174.99763 * 3 2 1 7 7 O 1.21282 * 120.00156 * 359.97438 * 6 3 2 8 8 N 1.34782 * 119.99814 * 180.02562 * 6 3 2 9 9 C 1.46496 * 119.99530 * 185.00733 * 8 6 3 10 10 H 1.08997 * 109.47385 * 355.42508 * 9 8 6 11 11 C 1.53009 * 109.46872 * 235.42855 * 9 8 6 12 12 N 1.46900 * 109.46815 * 55.00086 * 11 9 8 13 13 C 1.46903 * 110.99509 * 180.02562 * 12 11 9 14 14 C 1.50704 * 109.46965 * 180.02562 * 13 12 11 15 15 O 1.21290 * 119.99871 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99824 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99619 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00254 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99830 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00086 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 119.99956 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47381 * 90.00266 * 21 19 17 23 23 H 1.48503 * 109.47420 * 210.00202 * 21 19 17 24 24 H 1.48501 * 109.47489 * 330.00264 * 21 19 17 25 25 C 1.53003 * 109.47105 * 115.43212 * 9 8 6 26 26 C 1.54260 * 110.03127 * 55.18274 * 25 9 8 27 27 C 1.54898 * 104.19054 * 217.10490 * 26 25 9 28 28 C 1.54885 * 102.74787 * 37.94473 * 27 26 25 29 29 C 1.53876 * 110.03009 * 298.01308 * 25 9 8 30 30 H 1.09001 * 109.47465 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47466 * 300.00551 * 1 2 3 32 32 H 1.09010 * 109.46860 * 59.99851 * 1 2 3 33 33 H 1.08995 * 109.47084 * 239.99763 * 2 1 3 34 34 H 1.09003 * 109.46530 * 119.99931 * 2 1 3 35 35 H 1.08994 * 109.47202 * 180.02562 * 5 3 2 36 36 H 1.09011 * 109.46897 * 299.99760 * 5 3 2 37 37 H 1.08995 * 109.47466 * 59.99699 * 5 3 2 38 38 H 0.97000 * 119.99862 * 5.00295 * 8 6 3 39 39 H 1.08997 * 109.46758 * 175.00272 * 11 9 8 40 40 H 1.09007 * 109.46957 * 295.00084 * 11 9 8 41 41 H 1.00898 * 111.00160 * 303.95185 * 12 11 9 42 42 H 1.09005 * 109.47046 * 299.99906 * 13 12 11 43 43 H 1.08998 * 109.47474 * 60.00149 * 13 12 11 44 44 H 0.96996 * 120.00420 * 359.97438 * 16 14 13 45 45 H 0.96993 * 119.99992 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.01414 * 176.62573 * 25 9 8 47 47 H 1.09004 * 110.48927 * 335.77857 * 26 25 9 48 48 H 1.08998 * 110.48806 * 98.42976 * 26 25 9 49 49 H 1.08998 * 110.75625 * 279.62212 * 27 26 25 50 50 H 1.09007 * 110.75041 * 156.25583 * 27 26 25 51 51 H 1.09003 * 110.48529 * 203.37831 * 28 27 26 52 52 H 1.09002 * 110.60063 * 80.78729 * 28 27 26 53 53 H 1.09001 * 110.03188 * 238.56990 * 29 25 9 54 54 H 1.09006 * 110.03006 * 359.94995 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5419 1.4442 0.1239 7 8 4.1450 0.3951 0.2047 8 7 4.2149 2.6118 0.1459 9 6 5.6799 2.6127 0.1556 10 1 6.0434 1.5874 0.2246 11 6 6.1814 3.4136 1.3590 12 7 5.5878 2.8726 2.5890 13 6 6.0473 3.6192 3.7677 14 6 5.4194 3.0365 5.0076 15 8 4.6630 2.0925 4.9180 16 7 5.6974 3.5649 6.2158 17 6 5.1257 3.0352 7.3437 18 1 4.4523 2.1946 7.2639 19 6 5.4128 3.5797 8.5895 20 7 4.8652 3.0716 9.6706 21 14 6.5781 5.0330 8.7275 22 1 5.8061 6.2977 8.6287 23 1 7.2799 4.9823 10.0352 24 1 7.5749 4.9744 7.6282 25 6 6.1980 3.2519 -1.1343 26 6 5.5943 4.6612 -1.3052 27 6 5.3503 4.7875 -2.8296 28 6 4.8772 3.3650 -3.2190 29 6 5.7421 2.4278 -2.3511 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 1.9991 3.1540 -1.3075 36 1 2.0700 1.5875 -2.1492 37 1 0.5491 2.1253 -1.3970 38 1 3.7293 3.4514 0.1552 39 1 7.2674 3.3405 1.4169 40 1 5.8931 4.4587 1.2455 41 1 4.5803 2.8697 2.5333 42 1 7.1325 3.5479 3.8426 43 1 5.7578 4.6655 3.6708 44 1 6.3020 4.3201 6.2875 45 1 5.0658 3.4514 10.5402 46 1 7.2861 3.3115 -1.1102 47 1 4.6537 4.7419 -0.7603 48 1 6.2985 5.4214 -0.9673 49 1 6.2740 5.0431 -3.3488 50 1 4.5732 5.5232 -3.0367 51 1 5.0580 3.1793 -4.2777 52 1 3.8206 3.2347 -2.9848 53 1 6.6089 2.0881 -2.9180 54 1 5.1524 1.5719 -2.0226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699791530.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:32 Heat of formation + Delta-G solvation = -122.527147 kcal Electronic energy + Delta-G solvation = -31002.891279 eV Core-core repulsion = 26972.334507 eV Total energy + Delta-G solvation = -4030.556772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43348 -40.28762 -39.30507 -37.06280 -36.31508 -35.96664 -34.81597 -33.75509 -31.95667 -30.16278 -29.63041 -29.09843 -27.03330 -26.20084 -25.06655 -23.38301 -22.60411 -21.37420 -21.31513 -20.67179 -20.41555 -20.10992 -18.20337 -17.85473 -17.28762 -17.06717 -16.62869 -16.59569 -16.33678 -16.03213 -15.62578 -15.40382 -15.14432 -14.92978 -14.74425 -14.44246 -14.40158 -14.17466 -14.09509 -13.86442 -13.61942 -13.43557 -13.08330 -13.03493 -12.88709 -12.70515 -12.57521 -12.47393 -12.42804 -12.00234 -11.95979 -11.85660 -11.79531 -11.71974 -11.61045 -11.54120 -11.52277 -11.42132 -11.34289 -10.62736 -10.48607 -10.26411 -9.95467 -9.26407 -8.42396 -6.03772 1.29702 1.35023 1.44516 1.76950 1.94435 2.22544 2.28128 2.70591 3.13933 3.34669 3.68472 3.75167 3.80417 3.87464 3.88835 4.00216 4.13407 4.15215 4.30691 4.40130 4.43423 4.48472 4.53470 4.54847 4.59902 4.61499 4.69848 4.72768 4.75211 4.77636 4.85288 4.88453 4.97707 5.02215 5.03415 5.10176 5.13871 5.15609 5.21862 5.31858 5.35378 5.40350 5.47719 5.48058 5.51832 5.56344 5.67503 5.89497 6.06114 6.37017 6.58824 6.62933 6.86901 7.38277 7.39359 7.95865 8.75572 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.002805 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.103648 B = 9978.058164 C =11789.247264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.111 4.111 4 H 0.102 0.898 5 C -0.134 4.134 6 C 0.517 3.483 7 O -0.584 6.584 8 N -0.707 5.707 9 C 0.152 3.848 10 H 0.069 0.931 11 C 0.053 3.947 12 N -0.690 5.690 13 C 0.063 3.937 14 C 0.445 3.555 15 O -0.617 6.617 16 N -0.589 5.589 17 C -0.330 4.330 18 H 0.051 0.949 19 C -0.016 4.016 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.254 1.254 23 H -0.276 1.276 24 H -0.231 1.231 25 C -0.093 4.093 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.118 4.118 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.408 0.592 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.340 0.660 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.063 0.937 52 H 0.065 0.935 53 H 0.060 0.940 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 10.759 -29.860 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.132 4.132 4 H 0.120 0.880 5 C -0.191 4.191 6 C 0.305 3.695 7 O -0.463 6.463 8 N -0.360 5.360 9 C 0.046 3.954 10 H 0.087 0.913 11 C -0.076 4.076 12 N -0.323 5.323 13 C -0.069 4.069 14 C 0.233 3.767 15 O -0.501 6.501 16 N -0.231 5.231 17 C -0.460 4.460 18 H 0.069 0.931 19 C -0.215 4.215 20 N -0.576 5.576 21 Si 0.788 3.212 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.154 1.154 25 C -0.112 4.112 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.156 4.156 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.246 0.754 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.159 0.841 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.093 0.907 51 H 0.082 0.918 52 H 0.083 0.917 53 H 0.078 0.922 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.372 8.881 -29.592 30.898 hybrid contribution -0.200 0.938 1.046 1.419 sum 0.172 9.820 -28.546 30.188 Atomic orbital electron populations 1.21808 0.93570 1.02324 1.02750 1.21292 0.96964 0.94668 1.01429 1.21394 0.90225 0.99235 1.02350 0.87952 1.21797 1.03260 1.00386 0.93677 1.21113 0.90906 0.83450 0.74042 1.90687 1.71332 1.33341 1.50970 1.45833 1.06959 1.08418 1.74740 1.21004 0.80062 1.00368 0.93925 0.91256 1.22433 1.00652 0.97016 0.87499 1.59945 1.14202 1.56666 1.01523 1.21642 1.01479 0.96351 0.87425 1.21085 0.84742 0.85366 0.85482 1.90562 1.41028 1.31540 1.86992 1.42008 1.43716 1.31789 1.05595 1.18996 1.26201 1.15564 0.85200 0.93050 1.26165 0.99724 1.01967 0.93615 1.69812 1.45136 1.43417 0.99245 0.85323 0.78649 0.77604 0.79657 1.17816 1.20087 1.15426 1.22089 1.00944 0.95697 0.92509 1.22427 1.00970 0.95097 0.96803 1.22459 1.01429 0.96298 0.95399 1.22329 0.99386 0.95048 0.98984 1.22106 0.99446 0.97989 0.96033 0.92450 0.92605 0.90486 0.92290 0.94437 0.90570 0.92668 0.89663 0.75411 0.89019 0.92096 0.84064 0.86941 0.89976 0.77381 0.91107 0.89161 0.91345 0.90345 0.91246 0.90699 0.91782 0.91671 0.92152 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.67 71.98 0.70 -1.79 16 2 C -0.11 -2.41 4.75 30.59 0.15 -2.27 16 3 C -0.11 -2.19 2.72 -11.54 -0.03 -2.23 16 4 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 5 C -0.13 -1.63 8.85 71.98 0.64 -0.99 16 6 C 0.52 13.46 6.37 87.66 0.56 14.02 16 7 O -0.58 -21.45 15.25 -3.04 -0.05 -21.50 16 8 N -0.71 -13.65 3.16 -442.51 -1.40 -15.05 16 9 C 0.15 3.07 2.18 45.00 0.10 3.17 16 10 H 0.07 2.02 6.91 -2.39 -0.02 2.01 16 11 C 0.05 1.05 5.33 86.31 0.46 1.51 16 12 N -0.69 -21.08 6.12 -517.89 -3.17 -24.25 16 13 C 0.06 1.94 6.17 85.56 0.53 2.47 16 14 C 0.45 20.68 7.82 87.66 0.69 21.37 16 15 O -0.62 -35.81 15.78 -3.06 -0.05 -35.86 16 16 N -0.59 -28.21 5.09 -306.98 -1.56 -29.78 16 17 C -0.33 -19.75 10.16 84.04 0.85 -18.89 16 18 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 19 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 20 N -0.94 -57.16 13.96 21.67 0.30 -56.86 16 21 Si 0.97 38.85 27.73 68.60 1.90 40.76 16 22 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 25 C -0.09 -1.29 2.80 -10.07 -0.03 -1.32 16 26 C -0.12 -1.10 5.19 31.67 0.16 -0.93 16 27 C -0.12 -1.05 6.91 31.89 0.22 -0.83 16 28 C -0.12 -1.39 6.83 31.67 0.22 -1.17 16 29 C -0.12 -1.87 6.21 31.32 0.19 -1.67 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.96 6.57 -2.38 -0.02 0.94 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.11 7.95 -2.39 -0.02 1.09 16 35 H 0.08 0.66 7.68 -2.39 -0.02 0.64 16 36 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.08 0.79 6.56 -2.39 -0.02 0.77 16 38 H 0.41 5.56 6.71 -92.71 -0.62 4.93 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 0.87 7.25 -2.38 -0.02 0.86 16 41 H 0.34 11.30 7.57 -89.70 -0.68 10.62 16 42 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.39 15.27 5.76 -92.71 -0.53 14.74 16 45 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 0.60 6.03 -2.38 -0.01 0.58 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 51 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 54 H 0.04 0.89 6.74 -2.38 -0.02 0.87 16 Total: -1.00 -85.69 418.83 0.86 -84.83 By element: Atomic # 1 Polarization: 48.71 SS G_CDS: -0.99 Total: 47.72 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.86 Total: 9.99 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -5.82 Total: -125.93 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.09 Total: -57.36 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.76 kcal Total: -85.69 0.86 -84.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699791530.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.698 kcal (2) G-P(sol) polarization free energy of solvation -85.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds