Wall clock time and date at job start Tue Mar 31 2020 23:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 O 1.21277 * 120.00147 * 120.00097 * 5 3 2 7 7 N 1.34779 * 120.00168 * 299.99481 * 5 3 2 8 8 C 1.46505 * 119.99795 * 0.02562 * 7 5 3 9 9 C 1.46493 * 120.00206 * 180.02562 * 7 5 3 10 10 C 1.52995 * 109.47246 * 90.00200 * 9 7 5 11 11 C 1.52998 * 109.47306 * 299.99961 * 10 9 7 12 12 C 1.53007 * 109.47299 * 59.99835 * 10 9 7 13 13 C 1.53002 * 109.47442 * 180.02562 * 10 9 7 14 14 N 1.46494 * 109.47197 * 180.02562 * 13 10 9 15 15 C 1.36936 * 120.00072 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99891 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00269 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99742 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99829 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47138 * 90.00053 * 19 17 15 21 21 H 1.48504 * 109.47052 * 210.00041 * 19 17 15 22 22 H 1.48495 * 109.47217 * 329.99744 * 19 17 15 23 23 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 24 24 C 1.46771 * 124.34538 * 120.00064 * 23 3 2 25 25 C 1.54472 * 105.47458 * 197.01477 * 24 23 3 26 26 C 1.54637 * 101.76629 * 334.58618 * 25 24 23 27 27 C 1.34417 * 124.35280 * 299.70096 * 23 3 2 28 28 O 1.21280 * 124.94200 * 359.56966 * 27 23 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09002 * 109.47123 * 89.99850 * 8 7 5 35 35 H 1.08997 * 109.46965 * 209.99903 * 8 7 5 36 36 H 1.09001 * 109.47218 * 330.00310 * 8 7 5 37 37 H 1.09003 * 109.46944 * 210.00376 * 9 7 5 38 38 H 1.09004 * 109.47317 * 330.00018 * 9 7 5 39 39 H 1.09009 * 109.46868 * 59.99720 * 11 10 9 40 40 H 1.09000 * 109.47643 * 179.97438 * 11 10 9 41 41 H 1.08996 * 109.47083 * 300.00101 * 11 10 9 42 42 H 1.09003 * 109.46844 * 59.99852 * 12 10 9 43 43 H 1.09000 * 109.47217 * 180.02562 * 12 10 9 44 44 H 1.09001 * 109.46737 * 300.00527 * 12 10 9 45 45 H 1.09003 * 109.46761 * 300.00186 * 13 10 9 46 46 H 1.08996 * 109.47015 * 59.99857 * 13 10 9 47 47 H 0.96998 * 120.00113 * 359.97438 * 14 13 10 48 48 H 0.97001 * 119.99288 * 180.02562 * 18 17 15 49 49 H 1.09001 * 110.24687 * 316.01715 * 24 23 3 50 50 H 1.09001 * 110.24326 * 78.01876 * 24 23 3 51 51 H 1.09006 * 110.96955 * 92.70121 * 25 24 23 52 52 H 1.08998 * 110.97741 * 216.46671 * 25 24 23 53 53 H 1.08997 * 110.48583 * 143.47259 * 26 25 24 54 54 H 1.08994 * 110.48620 * 265.98811 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 8 4.2216 1.9436 -0.7477 7 7 4.1298 0.8912 1.2032 8 6 3.3087 0.2878 2.2558 9 6 5.5897 0.8935 1.3238 10 6 6.0397 2.1637 2.0482 11 6 5.5920 3.3909 1.2516 12 6 5.4126 2.2047 3.4432 13 6 7.5646 2.1664 2.1736 14 7 7.9953 3.3824 2.8678 15 6 9.3269 3.6047 3.0971 16 1 10.0596 2.8837 2.7659 17 6 9.7351 4.7572 3.7544 18 7 11.0151 4.9710 3.9743 19 14 8.4679 6.0046 4.3266 20 1 8.0321 5.6703 5.7063 21 1 9.0687 7.3626 4.3127 22 1 7.2955 5.9728 3.4158 23 7 1.6525 2.0974 -1.2519 24 6 0.8076 3.2948 -1.3330 25 6 0.3194 3.3563 -2.7973 26 6 1.4368 2.5825 -3.5349 27 6 2.0298 1.6823 -2.4734 28 8 2.7400 0.7240 -2.6928 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1466 -0.7664 2.0307 35 1 3.8205 0.3803 3.2137 36 1 2.3481 0.8004 2.3061 37 1 5.9087 0.0192 1.8913 38 1 6.0365 0.8643 0.3300 39 1 4.5056 3.3892 1.1618 40 1 5.9121 4.2959 1.7679 41 1 6.0387 3.3617 0.2578 42 1 5.7316 1.3304 4.0107 43 1 5.7328 3.1099 3.9591 44 1 4.3263 2.2030 3.3534 45 1 7.8839 1.2922 2.7409 46 1 8.0109 2.1375 1.1797 47 1 7.3373 4.0302 3.1649 48 1 11.3003 5.7762 4.4340 49 1 -0.0417 3.2038 -0.6558 50 1 1.3897 4.1842 -1.0918 51 1 -0.6418 2.8546 -2.9095 52 1 0.2628 4.3872 -3.1468 53 1 1.0179 1.9918 -4.3495 54 1 2.1918 3.2714 -3.9135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700448264.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:04 Heat of formation + Delta-G solvation = -69.295360 kcal Electronic energy + Delta-G solvation = -32163.812240 eV Core-core repulsion = 28135.563771 eV Total energy + Delta-G solvation = -4028.248469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05654 -40.73267 -38.78567 -37.40157 -36.65035 -35.92387 -34.67230 -32.73927 -31.92924 -29.20728 -28.70593 -28.43054 -27.94635 -27.49368 -26.21377 -24.06658 -23.18039 -22.71547 -21.40247 -20.35745 -19.68803 -19.34238 -18.33820 -17.87562 -17.16009 -17.05714 -16.82227 -16.32886 -16.20886 -15.76528 -15.63041 -15.29424 -15.06828 -14.76276 -14.61892 -14.41704 -14.35578 -14.20029 -13.99484 -13.86579 -13.73399 -13.59780 -13.36583 -13.29923 -13.22170 -12.88475 -12.83474 -12.63153 -12.54243 -12.37886 -12.28066 -12.15095 -12.08853 -11.84366 -11.77617 -11.73696 -11.68599 -11.53054 -11.01663 -10.81018 -10.64680 -9.67609 -9.55479 -9.31808 -8.05754 -5.38559 1.31889 1.36532 1.43549 1.56676 1.64367 1.88443 2.24788 2.44644 3.24935 3.37163 3.53224 3.60885 3.67228 3.84344 3.87334 3.88026 3.93921 4.01605 4.05523 4.17912 4.30761 4.39546 4.42119 4.46019 4.54302 4.61416 4.67025 4.68786 4.75557 4.77246 4.77850 4.84421 4.85221 4.88273 4.93733 5.04937 5.08528 5.09120 5.10268 5.13526 5.18603 5.22521 5.33513 5.38418 5.46680 5.52020 5.61928 5.72288 6.18479 6.18609 6.41880 7.04647 7.17234 7.31406 7.80729 8.01441 9.16284 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.002875 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.214134 B = 9736.139362 C =10275.608877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.144 3.856 4 H 0.146 0.854 5 C 0.491 3.509 6 O -0.564 6.564 7 N -0.606 5.606 8 C 0.057 3.943 9 C 0.137 3.863 10 C -0.079 4.079 11 C -0.110 4.110 12 C -0.131 4.131 13 C 0.167 3.833 14 N -0.751 5.751 15 C -0.235 4.235 16 H 0.054 0.946 17 C -0.064 4.064 18 N -0.984 5.984 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.294 1.294 22 H -0.259 1.259 23 N -0.605 5.605 24 C 0.096 3.904 25 C -0.115 4.115 26 C -0.156 4.156 27 C 0.509 3.491 28 O -0.576 6.576 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.006 0.994 47 H 0.366 0.634 48 H 0.259 0.741 49 H 0.112 0.888 50 H 0.067 0.933 51 H 0.102 0.898 52 H 0.110 0.890 53 H 0.107 0.893 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.344 -8.173 -6.573 36.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.037 3.963 4 H 0.163 0.837 5 C 0.279 3.721 6 O -0.441 6.441 7 N -0.339 5.339 8 C -0.084 4.084 9 C 0.013 3.987 10 C -0.080 4.080 11 C -0.167 4.167 12 C -0.188 4.188 13 C 0.040 3.960 14 N -0.397 5.397 15 C -0.366 4.366 16 H 0.072 0.928 17 C -0.255 4.255 18 N -0.635 5.635 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.184 1.184 23 N -0.338 5.338 24 C -0.026 4.026 25 C -0.152 4.152 26 C -0.196 4.196 27 C 0.298 3.702 28 O -0.456 6.456 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.024 0.976 47 H 0.201 0.799 48 H 0.067 0.933 49 H 0.130 0.870 50 H 0.085 0.915 51 H 0.120 0.880 52 H 0.129 0.871 53 H 0.126 0.874 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -34.413 -8.499 -7.089 36.149 hybrid contribution 0.894 0.952 0.035 1.307 sum -33.519 -7.547 -7.054 35.074 Atomic orbital electron populations 1.21667 0.92500 1.02637 1.02714 1.22121 0.98752 0.93177 1.03942 1.21036 0.89784 0.97033 0.88401 0.83673 1.21535 0.91889 0.77476 0.81240 1.90728 1.66143 1.46069 1.41168 1.47773 1.06473 1.58239 1.21391 1.22491 0.96253 0.98966 0.90724 1.21255 0.80213 0.97069 1.00144 1.21047 0.93958 0.95909 0.97131 1.21580 0.99994 0.96804 0.98334 1.21880 1.01021 1.02033 0.93913 1.20694 0.92667 0.88600 0.94059 1.42680 1.03406 1.23186 1.70441 1.19055 0.84113 1.03793 1.29604 0.92817 1.25501 0.97832 1.00405 1.01788 1.69890 1.15618 1.28935 1.49055 0.85435 0.79076 0.78415 0.79034 1.19468 1.22013 1.18405 1.48122 1.51147 1.29885 1.04672 1.22426 0.94486 0.85947 0.99727 1.22606 0.97719 1.02786 0.92093 1.22370 1.00411 0.99201 0.97626 1.21501 0.78717 0.84179 0.85797 1.90666 1.38996 1.31218 1.84692 0.91876 0.93331 0.90017 0.87445 0.93902 0.90573 0.89012 0.88419 0.87991 0.92987 0.92642 0.94738 0.95203 0.91161 0.94429 0.90032 0.94739 0.97600 0.79893 0.93258 0.87018 0.91493 0.87984 0.87108 0.87448 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.80 71.98 0.71 -0.46 16 2 C -0.14 -2.03 5.02 30.60 0.15 -1.88 16 3 C 0.14 2.44 1.87 44.25 0.08 2.53 16 4 H 0.15 1.35 7.33 -2.39 -0.02 1.34 16 5 C 0.49 12.82 5.17 87.66 0.45 13.27 16 6 O -0.56 -20.92 12.61 11.93 0.15 -20.77 16 7 N -0.61 -12.97 2.40 -846.76 -2.03 -15.00 16 8 C 0.06 0.60 7.71 127.77 0.99 1.59 16 9 C 0.14 3.71 4.60 86.38 0.40 4.11 16 10 C -0.08 -2.47 0.60 -52.18 -0.03 -2.51 16 11 C -0.11 -3.85 6.96 71.98 0.50 -3.35 16 12 C -0.13 -3.36 7.05 71.98 0.51 -2.85 16 13 C 0.17 6.83 5.15 86.38 0.44 7.27 16 14 N -0.75 -36.97 4.81 -343.46 -1.65 -38.62 16 15 C -0.23 -14.05 10.47 84.03 0.88 -13.17 16 16 H 0.05 3.53 8.06 -2.91 -0.02 3.50 16 17 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 18 N -0.98 -64.96 13.97 21.65 0.30 -64.65 16 19 Si 0.95 46.80 27.74 68.60 1.90 48.70 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.26 -11.76 6.52 99.48 0.65 -11.11 16 23 N -0.61 -11.10 2.08 -798.18 -1.66 -12.76 16 24 C 0.10 0.90 7.30 86.83 0.63 1.53 16 25 C -0.11 -0.76 7.18 31.65 0.23 -0.54 16 26 C -0.16 -2.42 6.86 30.59 0.21 -2.21 16 27 C 0.51 12.85 6.69 87.90 0.59 13.44 16 28 O -0.58 -20.85 15.33 11.92 0.18 -20.66 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.49 7.75 -2.39 -0.02 0.47 16 31 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.11 1.09 4.45 -2.39 -0.01 1.08 16 33 H 0.04 1.00 6.67 -2.39 -0.02 0.98 16 34 H 0.08 0.61 6.86 -2.39 -0.02 0.60 16 35 H 0.09 0.85 6.05 -2.39 -0.01 0.84 16 36 H 0.10 0.50 6.06 -2.39 -0.01 0.49 16 37 H 0.10 2.25 8.07 -2.39 -0.02 2.23 16 38 H 0.05 1.77 7.42 -2.39 -0.02 1.75 16 39 H 0.05 1.73 6.15 -2.38 -0.01 1.71 16 40 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 41 H 0.03 1.20 7.73 -2.39 -0.02 1.18 16 42 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 43 H 0.04 1.13 6.86 -2.39 -0.02 1.12 16 44 H 0.08 1.54 5.99 -2.39 -0.01 1.53 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.37 17.23 3.22 -92.71 -0.30 16.93 16 48 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 49 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 52 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 53 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 54 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -91.06 400.94 4.93 -86.12 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.53 Total: 24.31 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 7.21 Total: 13.34 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -5.04 Total: -131.04 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: 0.33 Total: -41.44 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.90 Total: 48.70 kcal Total: -91.06 4.93 -86.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700448264.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.829 kcal (2) G-P(sol) polarization free energy of solvation -91.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds