Wall clock time and date at job start Tue Mar 31 2020 22:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 H 1.08998 * 109.47222 * 54.99875 * 3 2 1 5 5 C 1.52997 * 109.46922 * 294.99795 * 3 2 1 6 6 C 1.53001 * 109.47193 * 174.99843 * 3 2 1 7 7 H 1.08998 * 109.47010 * 59.99902 * 6 3 2 8 8 N 1.46503 * 109.47171 * 300.00092 * 6 3 2 9 9 C 1.34773 * 119.99697 * 299.99932 * 8 6 3 10 10 C 1.50703 * 119.99400 * 180.02562 * 9 8 6 11 11 O 1.21272 * 120.00584 * 0.02562 * 9 8 6 12 12 C 1.50696 * 109.47190 * 180.02562 * 6 3 2 13 13 O 1.21276 * 120.00377 * 99.99859 * 12 6 3 14 14 N 1.34777 * 119.99769 * 279.99868 * 12 6 3 15 15 C 1.46498 * 119.99913 * 179.97438 * 14 12 6 16 16 C 1.53003 * 109.47284 * 180.02562 * 15 14 12 17 17 H 1.08995 * 110.43787 * 303.91564 * 16 15 14 18 18 C 1.54266 * 110.48439 * 66.45861 * 16 15 14 19 19 C 1.53873 * 106.60081 * 142.28954 * 18 16 15 20 20 C 1.54264 * 106.60032 * 359.97438 * 19 18 16 21 21 H 1.09005 * 110.48763 * 95.19587 * 20 19 18 22 22 N 1.46494 * 110.49296 * 217.71609 * 20 19 18 23 23 C 1.36945 * 119.99612 * 273.54829 * 22 20 19 24 24 H 1.07999 * 120.00077 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99637 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99539 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 120.00216 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46712 * 90.00052 * 27 25 23 29 29 H 1.48499 * 109.46916 * 209.99467 * 27 25 23 30 30 H 1.48492 * 109.46909 * 330.00070 * 27 25 23 31 31 C 1.54893 * 104.19499 * 336.39365 * 20 19 18 32 32 H 1.09005 * 109.47088 * 59.99877 * 1 2 3 33 33 H 1.08997 * 109.47235 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47404 * 300.00285 * 1 2 3 35 35 H 1.08999 * 109.47404 * 239.99715 * 2 1 3 36 36 H 1.09005 * 109.47088 * 120.00123 * 2 1 3 37 37 H 1.09001 * 109.47711 * 299.99942 * 5 3 2 38 38 H 1.08999 * 109.47160 * 60.00392 * 5 3 2 39 39 H 1.09001 * 109.47016 * 179.97438 * 5 3 2 40 40 H 0.97003 * 119.99631 * 119.99523 * 8 6 3 41 41 H 1.08999 * 109.47430 * 60.00290 * 10 9 8 42 42 H 1.09005 * 109.46976 * 180.02562 * 10 9 8 43 43 H 1.09005 * 109.47125 * 299.99642 * 10 9 8 44 44 H 0.97003 * 120.00428 * 0.02562 * 14 12 6 45 45 H 1.09005 * 109.46991 * 60.00336 * 15 14 12 46 46 H 1.09000 * 109.47422 * 300.00122 * 15 14 12 47 47 H 1.08999 * 110.03419 * 22.99928 * 18 16 15 48 48 H 1.09004 * 110.07039 * 261.59463 * 18 16 15 49 49 H 1.09001 * 110.02992 * 240.71329 * 19 18 16 50 50 H 1.09000 * 110.03615 * 119.28015 * 19 18 16 51 51 H 0.96995 * 120.00290 * 93.81720 * 22 20 19 52 52 H 0.97005 * 119.99727 * 180.02562 * 26 25 23 53 53 H 1.08995 * 110.75986 * 156.25413 * 31 20 19 54 54 H 1.09001 * 110.75710 * 279.62487 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1258 7 1 3.9994 0.9052 -0.7160 8 7 3.9524 0.7892 1.3776 9 6 3.5278 1.2847 2.5568 10 6 3.9270 0.6112 3.8445 11 8 2.8247 2.2725 2.5818 12 6 4.0672 2.8650 0.1264 13 8 4.3556 3.4058 1.1729 14 7 4.1960 3.5347 -1.0361 15 6 4.6838 4.9161 -1.0355 16 6 4.7348 5.4396 -2.4722 17 1 5.3491 4.7877 -3.0933 18 6 3.3114 5.5563 -3.0552 19 6 3.2933 6.8292 -3.9196 20 6 4.7062 7.4420 -3.8313 21 1 5.3163 7.1172 -4.6742 22 7 4.6293 8.9043 -3.7890 23 6 4.5778 9.6212 -4.9547 24 1 4.5944 9.1085 -5.9051 25 6 4.5044 11.0068 -4.9146 26 7 4.4545 11.6958 -6.0350 27 14 4.4750 11.8935 -3.2706 28 1 5.8653 12.2029 -2.8503 29 1 3.7053 13.1565 -3.4032 30 1 3.8314 11.0259 -2.2518 31 6 5.2769 6.8906 -2.5011 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 2.0699 1.5874 -2.1492 38 1 0.5490 2.1253 -1.3969 39 1 1.9983 3.1543 -1.3072 40 1 4.5145 -0.0011 1.3576 41 1 5.0133 0.6129 3.9340 42 1 3.4919 1.1500 4.6864 43 1 3.5639 -0.4166 3.8447 44 1 3.9650 3.1024 -1.8732 45 1 5.6830 4.9484 -0.6009 46 1 4.0109 5.5388 -0.4460 47 1 2.5834 5.6424 -2.2485 48 1 3.0861 4.6846 -3.6696 49 1 2.5565 7.5330 -3.5324 50 1 3.0602 6.5751 -4.9536 51 1 4.6187 9.3650 -2.9355 52 1 4.4035 12.6641 -6.0070 53 1 6.3668 6.8952 -2.5169 54 1 4.8994 7.4613 -1.6527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707122428.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:48 Heat of formation + Delta-G solvation = -106.870919 kcal Electronic energy + Delta-G solvation = -30734.190500 eV Core-core repulsion = 26704.312632 eV Total energy + Delta-G solvation = -4029.877867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73923 -40.05538 -39.22097 -37.54794 -36.40630 -35.04149 -34.71091 -33.04523 -31.78832 -30.49563 -30.03088 -29.06485 -27.37732 -25.91162 -24.78184 -24.24488 -22.29449 -21.75268 -21.29405 -20.67137 -20.30762 -19.57945 -18.49784 -17.93101 -17.25161 -16.99598 -16.61842 -16.41353 -16.38402 -15.95096 -15.82016 -15.33918 -14.86762 -14.83290 -14.68664 -14.45333 -14.34766 -14.16291 -14.07720 -13.71171 -13.44973 -13.26296 -13.20326 -13.17282 -12.92121 -12.84844 -12.68324 -12.46795 -12.27457 -12.15129 -11.96769 -11.92782 -11.85199 -11.74999 -11.67962 -11.54801 -11.49350 -11.22972 -11.06965 -10.96486 -10.52923 -9.99498 -9.85109 -9.29216 -8.03202 -5.35278 1.36434 1.38235 1.45547 1.65470 1.80448 2.17655 2.46858 2.52076 3.27582 3.53164 3.64042 3.70949 3.77436 3.82741 3.92453 4.09203 4.13505 4.23632 4.25533 4.37776 4.46012 4.49935 4.58531 4.58909 4.64420 4.67755 4.69243 4.71768 4.72582 4.79654 4.80434 4.90731 5.04342 5.09003 5.09317 5.10899 5.15064 5.20088 5.23136 5.23967 5.36728 5.42481 5.47539 5.52714 5.56823 5.57427 5.58598 5.78666 6.22462 6.62369 6.69460 7.07980 7.33585 7.52441 7.86587 8.03627 9.18379 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002193 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.977127 B =12764.996563 C =13457.196774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.099 4.099 4 H 0.054 0.946 5 C -0.161 4.161 6 C 0.140 3.860 7 H 0.151 0.849 8 N -0.710 5.710 9 C 0.503 3.497 10 C -0.166 4.166 11 O -0.571 6.571 12 C 0.493 3.507 13 O -0.565 6.565 14 N -0.713 5.713 15 C 0.137 3.863 16 C -0.083 4.083 17 H 0.107 0.893 18 C -0.105 4.105 19 C -0.140 4.140 20 C 0.168 3.832 21 H 0.054 0.946 22 N -0.752 5.752 23 C -0.225 4.225 24 H 0.059 0.941 25 C -0.067 4.067 26 N -0.984 5.984 27 Si 0.952 3.048 28 H -0.278 1.278 29 H -0.297 1.297 30 H -0.257 1.257 31 C -0.118 4.118 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.423 0.577 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.415 0.585 45 H 0.060 0.940 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.089 0.911 49 H 0.040 0.960 50 H 0.052 0.948 51 H 0.363 0.637 52 H 0.257 0.743 53 H 0.076 0.924 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -35.651 14.842 38.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.118 4.118 4 H 0.072 0.928 5 C -0.219 4.219 6 C 0.031 3.969 7 H 0.169 0.831 8 N -0.364 5.364 9 C 0.292 3.708 10 C -0.225 4.225 11 O -0.449 6.449 12 C 0.279 3.721 13 O -0.443 6.443 14 N -0.368 5.368 15 C 0.013 3.987 16 C -0.102 4.102 17 H 0.125 0.875 18 C -0.143 4.143 19 C -0.181 4.181 20 C 0.060 3.940 21 H 0.072 0.928 22 N -0.395 5.395 23 C -0.356 4.356 24 H 0.077 0.923 25 C -0.258 4.258 26 N -0.635 5.635 27 Si 0.780 3.220 28 H -0.204 1.204 29 H -0.224 1.224 30 H -0.182 1.182 31 C -0.157 4.157 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.261 0.739 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.253 0.747 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.196 0.804 52 H 0.065 0.935 53 H 0.095 0.905 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.972 -34.529 15.410 37.863 hybrid contribution -0.080 1.307 0.330 1.350 sum -2.053 -33.223 15.740 36.820 Atomic orbital electron populations 1.21813 0.96126 1.01946 1.01306 1.21462 0.95695 0.94000 1.03067 1.21404 0.92299 0.98689 0.99454 0.92789 1.22089 1.02633 1.00559 0.96594 1.21070 0.96542 0.89789 0.89513 0.83144 1.45579 1.54339 1.32258 1.04244 1.21382 0.79053 0.83447 0.86964 1.21894 1.04625 1.03028 0.92951 1.90715 1.39018 1.27119 1.88014 1.21561 0.77216 0.89967 0.83345 1.90742 1.50225 1.70398 1.32890 1.46008 1.67208 1.14214 1.09337 1.21188 0.98754 0.82228 0.96531 1.22046 0.97573 0.96009 0.94618 0.87488 1.22124 0.95981 0.97522 0.98690 1.22726 0.98756 0.97130 0.99447 1.21314 0.94528 0.81485 0.96644 0.92834 1.42861 1.89824 1.02985 1.03817 1.19061 1.40328 0.89458 0.86736 0.92281 1.25472 1.03105 0.97177 1.00018 1.69879 1.59948 1.06280 1.27371 0.85451 0.77950 0.77984 0.80643 1.20418 1.22385 1.18206 1.22667 1.00794 0.95417 0.96836 0.92139 0.91635 0.94792 0.89352 0.91915 0.89192 0.91901 0.93205 0.73914 0.87987 0.90555 0.86549 0.74699 0.92206 0.93971 0.92445 0.89247 0.94124 0.92950 0.80395 0.93451 0.90497 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.01 16 2 C -0.10 -0.95 5.32 30.59 0.16 -0.79 16 3 C -0.10 -1.40 1.75 -10.79 -0.02 -1.42 16 4 H 0.05 1.31 6.17 -2.39 -0.01 1.30 16 5 C -0.16 -1.90 7.97 71.98 0.57 -1.33 16 6 C 0.14 1.79 2.61 44.24 0.12 1.90 16 7 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 8 N -0.71 -8.32 4.35 -446.11 -1.94 -10.26 16 9 C 0.50 9.72 6.71 87.66 0.59 10.31 16 10 C -0.17 -1.72 10.32 71.24 0.74 -0.99 16 11 O -0.57 -17.98 12.97 19.46 0.25 -17.72 16 12 C 0.49 10.78 6.30 87.66 0.55 11.33 16 13 O -0.57 -18.77 13.68 19.45 0.27 -18.50 16 14 N -0.71 -12.25 4.09 -463.06 -1.89 -14.15 16 15 C 0.14 3.02 4.99 86.38 0.43 3.45 16 16 C -0.08 -1.72 2.93 -9.71 -0.03 -1.75 16 17 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.11 -2.34 6.05 31.32 0.19 -2.15 16 19 C -0.14 -4.56 6.54 31.32 0.20 -4.36 16 20 C 0.17 6.15 3.50 46.07 0.16 6.31 16 21 H 0.05 2.02 8.11 -2.38 -0.02 2.01 16 22 N -0.75 -35.48 4.96 -317.86 -1.58 -37.06 16 23 C -0.22 -12.92 10.45 84.03 0.88 -12.04 16 24 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 25 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 26 N -0.98 -63.93 13.97 21.65 0.30 -63.63 16 27 Si 0.95 46.94 27.73 68.60 1.90 48.84 16 28 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 29 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 30 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 31 C -0.12 -3.34 5.92 31.90 0.19 -3.15 16 32 H 0.06 0.64 6.57 -2.38 -0.02 0.62 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.57 7.45 -2.38 -0.02 0.55 16 37 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 38 H 0.06 0.80 6.57 -2.39 -0.02 0.78 16 39 H 0.05 0.77 5.94 -2.39 -0.01 0.76 16 40 H 0.42 1.35 8.83 -92.71 -0.82 0.53 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 1.03 8.12 -2.38 -0.02 1.01 16 43 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.42 4.30 7.18 -92.71 -0.67 3.64 16 45 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.04 1.16 8.05 -2.39 -0.02 1.14 16 47 H 0.06 1.35 7.77 -2.39 -0.02 1.33 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 50 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.36 16.74 5.59 -92.71 -0.52 16.23 16 52 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 53 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 54 H 0.06 1.81 7.94 -2.39 -0.02 1.79 16 Total: -1.00 -87.79 415.39 2.05 -85.74 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -1.16 Total: 25.93 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.89 Total: 0.80 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.11 Total: -125.09 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: 0.52 Total: -36.22 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.90 Total: 48.84 kcal Total: -87.79 2.05 -85.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707122428.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.135 kcal (2) G-P(sol) polarization free energy of solvation -87.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds