Wall clock time and date at job start Tue Mar 31 2020 22:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47375 * 2 1 4 4 H 1.09001 * 109.47265 * 308.02743 * 3 2 1 5 5 C 1.53007 * 109.47253 * 188.03328 * 3 2 1 6 6 C 1.53001 * 109.47535 * 68.03209 * 3 2 1 7 7 H 1.08994 * 109.47557 * 173.42004 * 6 3 2 8 8 N 1.46504 * 109.47097 * 53.41529 * 6 3 2 9 9 C 1.34777 * 119.99699 * 92.84533 * 8 6 3 10 10 C 1.50695 * 120.00220 * 184.64942 * 9 8 6 11 11 O 1.21286 * 119.99697 * 4.64358 * 9 8 6 12 12 C 1.50703 * 109.46728 * 293.42168 * 6 3 2 13 13 O 1.21288 * 119.99878 * 117.51534 * 12 6 3 14 14 N 1.34774 * 119.99942 * 297.51419 * 12 6 3 15 15 C 1.46504 * 119.99845 * 175.00021 * 14 12 6 16 16 C 1.52998 * 109.47134 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47131 * 179.97438 * 16 15 14 18 18 H 1.09008 * 110.88620 * 54.30578 * 17 16 15 19 19 C 1.55162 * 111.00400 * 178.18173 * 17 16 15 20 20 C 1.54322 * 102.94109 * 153.57881 * 19 17 16 21 21 N 1.47020 * 107.27292 * 337.80822 * 20 19 17 22 22 C 1.36942 * 125.65129 * 178.97509 * 21 20 19 23 23 H 1.07999 * 119.99997 * 179.97438 * 22 21 20 24 24 C 1.38820 * 119.99615 * 359.97438 * 22 21 20 25 25 N 1.31612 * 119.99846 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99693 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47419 * 90.00019 * 26 24 22 28 28 H 1.48500 * 109.47017 * 209.99814 * 26 24 22 29 29 H 1.48501 * 109.47414 * 329.99820 * 26 24 22 30 30 C 1.47467 * 108.72424 * 358.97437 * 21 20 19 31 31 H 1.09006 * 109.46854 * 47.24220 * 1 2 3 32 32 H 1.08997 * 109.47279 * 167.24080 * 1 2 3 33 33 H 1.08997 * 109.46710 * 287.24270 * 1 2 3 34 34 H 1.09001 * 109.47072 * 239.99645 * 2 1 3 35 35 H 1.09001 * 109.46974 * 119.99874 * 2 1 3 36 36 H 1.09004 * 109.46891 * 305.82224 * 5 3 2 37 37 H 1.08998 * 109.47123 * 65.82346 * 5 3 2 38 38 H 1.08995 * 109.46962 * 185.82410 * 5 3 2 39 39 H 0.97001 * 120.00330 * 272.85404 * 8 6 3 40 40 H 1.09005 * 109.47004 * 359.97438 * 10 9 8 41 41 H 1.08991 * 109.47666 * 119.99900 * 10 9 8 42 42 H 1.09003 * 109.47286 * 240.00508 * 10 9 8 43 43 H 0.96991 * 120.00114 * 355.00696 * 14 12 6 44 44 H 1.09003 * 109.46958 * 60.00041 * 15 14 12 45 45 H 1.09000 * 109.47269 * 300.00567 * 15 14 12 46 46 H 1.08995 * 109.47132 * 300.00543 * 16 15 14 47 47 H 1.09002 * 109.46562 * 60.00261 * 16 15 14 48 48 H 1.08995 * 110.71975 * 271.93929 * 19 17 16 49 49 H 1.08994 * 110.71649 * 35.04124 * 19 17 16 50 50 H 1.09007 * 109.88404 * 97.22290 * 20 19 17 51 51 H 1.09002 * 109.88241 * 218.23443 * 20 19 17 52 52 H 0.97000 * 119.99799 * 180.02562 * 25 24 22 53 53 H 1.08996 * 110.34870 * 265.25451 * 30 21 20 54 54 H 1.08998 * 110.40659 * 142.91564 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5643 1.9961 -0.8095 5 6 3.5568 1.4471 -0.2016 6 6 1.7014 2.1032 1.3377 7 1 2.1648 3.0887 1.3839 8 7 2.2075 1.2737 2.4342 9 6 3.4314 1.5087 2.9473 10 6 3.9949 0.5918 4.0022 11 8 4.0793 2.4580 2.5600 12 6 0.2063 2.2447 1.4638 13 8 -0.3845 1.6691 2.3530 14 7 -0.4742 3.0109 0.5884 15 6 -1.9374 3.0618 0.6427 16 6 -2.4560 3.9980 -0.4507 17 6 -3.9840 4.0507 -0.3944 18 1 -4.3270 4.3227 0.6039 19 6 -4.5465 5.0272 -1.4609 20 6 -5.9589 4.4672 -1.7316 21 7 -5.9525 3.0533 -1.3287 22 6 -7.0224 2.2009 -1.3907 23 1 -6.9150 1.1753 -1.0697 24 6 -8.2450 2.6551 -1.8662 25 7 -8.3756 3.9048 -2.2578 26 14 -9.7046 1.4925 -1.9501 27 1 -10.4599 1.5530 -0.6730 28 1 -10.5933 1.8938 -3.0701 29 1 -9.2213 0.1063 -2.1741 30 6 -4.6032 2.7046 -0.8465 31 1 -0.3633 0.6977 -0.7546 32 1 -0.3634 -1.0022 -0.2270 33 1 -0.3633 0.3046 0.9815 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.0248 0.8086 0.5477 37 1 3.7921 1.0715 -1.1974 38 1 3.9338 2.4646 -0.0986 39 1 1.6618 0.5554 2.7907 40 1 3.2748 -0.1969 4.2204 41 1 4.9220 0.1477 3.6401 42 1 4.1950 1.1616 4.9096 43 1 0.0047 3.5285 -0.0776 44 1 -2.2520 3.4333 1.6180 45 1 -2.3418 2.0616 0.4872 46 1 -2.0516 4.9980 -0.2947 47 1 -2.1413 3.6268 -1.4260 48 1 -4.6031 6.0408 -1.0641 49 1 -3.9389 5.0020 -2.3654 50 1 -6.6944 5.0167 -1.1440 51 1 -6.1941 4.5517 -2.7925 52 1 -9.2300 4.2222 -2.5897 53 1 -4.0138 2.2677 -1.6527 54 1 -4.6668 2.0146 -0.0051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713740261.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:35 Heat of formation + Delta-G solvation = -88.938045 kcal Electronic energy + Delta-G solvation = -30724.022572 eV Core-core repulsion = 26694.922333 eV Total energy + Delta-G solvation = -4029.100240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91191 -40.19067 -39.38757 -37.50449 -36.49498 -34.80535 -34.42302 -32.56955 -31.65038 -30.75918 -30.49955 -28.73616 -27.47783 -26.27772 -24.43296 -23.61377 -22.18444 -21.92430 -21.71804 -20.93097 -20.61172 -18.86070 -18.71045 -17.96481 -17.28167 -16.91232 -16.85574 -16.53907 -16.32564 -15.98643 -15.55481 -15.52308 -15.05040 -14.82386 -14.62623 -14.30474 -14.14398 -13.91851 -13.80282 -13.66507 -13.60052 -13.33228 -13.28045 -13.05851 -12.96770 -12.92004 -12.81659 -12.64299 -12.50019 -12.25200 -12.01250 -11.93974 -11.79843 -11.63902 -11.53712 -11.47095 -11.37040 -11.30307 -10.94895 -10.92095 -10.70583 -10.08980 -10.04234 -8.88210 -7.85264 -5.20236 1.44113 1.46247 1.50179 1.54851 1.62560 1.89492 2.47522 2.49451 3.32580 3.53890 3.68697 3.71333 3.80585 3.81701 3.96037 4.00374 4.11035 4.16813 4.35149 4.37548 4.41412 4.42750 4.53517 4.58472 4.63494 4.68392 4.71347 4.73354 4.76915 4.79386 4.92148 4.96362 5.02004 5.06022 5.11276 5.14270 5.16087 5.18773 5.26079 5.27608 5.36454 5.37977 5.43321 5.45222 5.50197 5.54711 5.71471 5.80090 6.21305 6.48670 6.52583 7.11342 7.15817 7.23132 7.79778 8.43844 9.25090 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.002068 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.268949 B =13533.926574 C =13902.459433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.112 4.112 3 C -0.092 4.092 4 H 0.098 0.902 5 C -0.133 4.133 6 C 0.130 3.870 7 H 0.114 0.886 8 N -0.704 5.704 9 C 0.511 3.489 10 C -0.167 4.167 11 O -0.585 6.585 12 C 0.521 3.479 13 O -0.571 6.571 14 N -0.710 5.710 15 C 0.126 3.874 16 C -0.100 4.100 17 C -0.085 4.085 18 H 0.070 0.930 19 C -0.123 4.123 20 C 0.181 3.819 21 N -0.631 5.631 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.070 4.070 25 N -0.952 5.952 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.269 1.269 30 C 0.135 3.865 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.414 0.586 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.416 0.584 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.005 0.995 51 H 0.003 0.997 52 H 0.246 0.754 53 H 0.026 0.974 54 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.092 -4.744 7.092 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.150 4.150 3 C -0.112 4.112 4 H 0.116 0.884 5 C -0.191 4.191 6 C 0.021 3.979 7 H 0.132 0.868 8 N -0.358 5.358 9 C 0.300 3.700 10 C -0.226 4.226 11 O -0.465 6.465 12 C 0.307 3.693 13 O -0.451 6.451 14 N -0.362 5.362 15 C 0.002 3.998 16 C -0.139 4.139 17 C -0.105 4.105 18 H 0.088 0.912 19 C -0.161 4.161 20 C 0.056 3.944 21 N -0.358 5.358 22 C -0.371 4.371 23 H 0.097 0.903 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.220 1.220 29 H -0.194 1.194 30 C 0.010 3.990 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.251 0.749 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.024 0.976 51 H 0.021 0.979 52 H 0.055 0.945 53 H 0.044 0.956 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 27.919 -4.512 7.365 29.225 hybrid contribution -1.651 -0.508 -0.310 1.755 sum 26.268 -5.020 7.056 27.658 Atomic orbital electron populations 1.22304 0.96638 1.01959 1.03007 1.21524 0.94922 0.95719 1.02814 1.21601 0.97785 0.97175 0.94603 0.88366 1.21718 0.93648 1.01976 1.01733 1.20898 0.89838 0.97981 0.89207 0.86846 1.45866 1.17895 1.35982 1.36048 1.21437 0.80517 0.85529 0.82495 1.21881 1.03572 0.99637 0.97473 1.90703 1.60409 1.32227 1.63178 1.20701 0.89909 0.77808 0.80837 1.90693 1.71036 1.48370 1.35005 1.45857 1.07449 1.47496 1.35432 1.21286 0.78947 1.00160 0.99392 1.21594 0.92848 1.00573 0.98836 1.22146 0.94871 0.94884 0.98585 0.91163 1.22760 0.95632 0.98769 0.98955 1.20928 0.93391 0.83963 0.96133 1.44858 1.07231 1.08454 1.75241 1.19466 0.88972 0.92921 1.35751 0.90253 1.25673 1.00571 0.98239 1.01793 1.70199 1.24123 1.15790 1.50011 0.85082 0.79045 0.78352 0.76902 1.21314 1.21979 1.19367 1.21832 0.85317 0.96044 0.95801 0.92589 0.93103 0.91822 0.90817 0.91554 0.93620 0.91309 0.92772 0.74868 0.88508 0.87518 0.88101 0.74679 0.92435 0.92502 0.88754 0.89892 0.90173 0.90484 0.97635 0.97858 0.94473 0.95581 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.59 71.98 0.62 -2.64 16 2 C -0.11 -1.51 5.29 30.59 0.16 -1.35 16 3 C -0.09 -1.15 2.36 -10.79 -0.03 -1.18 16 4 H 0.10 0.99 7.56 -2.39 -0.02 0.97 16 5 C -0.13 -1.74 8.02 71.98 0.58 -1.16 16 6 C 0.13 2.03 2.33 44.25 0.10 2.13 16 7 H 0.11 1.91 7.28 -2.39 -0.02 1.89 16 8 N -0.70 -10.62 3.71 -446.09 -1.65 -12.27 16 9 C 0.51 8.20 6.56 87.66 0.58 8.77 16 10 C -0.17 -1.35 10.39 71.23 0.74 -0.61 16 11 O -0.58 -13.68 15.57 -3.05 -0.05 -13.73 16 12 C 0.52 10.07 4.43 87.66 0.39 10.46 16 13 O -0.57 -15.09 14.17 -3.06 -0.04 -15.13 16 14 N -0.71 -11.44 5.07 -463.04 -2.35 -13.79 16 15 C 0.13 2.63 5.56 86.38 0.48 3.11 16 16 C -0.10 -1.99 4.84 30.59 0.15 -1.84 16 17 C -0.08 -2.58 3.04 -9.40 -0.03 -2.61 16 18 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 19 C -0.12 -4.18 6.42 31.78 0.20 -3.98 16 20 C 0.18 8.99 5.37 86.73 0.47 9.46 16 21 N -0.63 -32.94 3.40 -691.87 -2.35 -35.29 16 22 C -0.24 -13.90 10.28 84.03 0.86 -13.04 16 23 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.07 -4.09 5.49 84.87 0.47 -3.62 16 25 N -0.95 -58.49 10.31 21.65 0.22 -58.27 16 26 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 28 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 29 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 30 C 0.13 5.34 6.04 86.85 0.52 5.87 16 31 H 0.06 1.00 7.76 -2.38 -0.02 0.98 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.40 4.38 -2.39 -0.01 1.38 16 34 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 35 H 0.07 0.87 6.93 -2.39 -0.02 0.85 16 36 H 0.04 0.67 6.85 -2.38 -0.02 0.65 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.82 8.01 -2.39 -0.02 0.80 16 39 H 0.41 5.78 7.47 -92.71 -0.69 5.08 16 40 H 0.10 0.40 7.92 -2.38 -0.02 0.39 16 41 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.42 4.21 8.16 -92.72 -0.76 3.45 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.42 7.59 -2.39 -0.02 1.40 16 46 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 48 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 50 H 0.01 0.30 7.38 -2.38 -0.02 0.29 16 51 H 0.00 0.18 7.50 -2.39 -0.02 0.16 16 52 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 53 H 0.03 1.00 7.96 -2.39 -0.02 0.98 16 54 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -77.06 414.43 1.51 -75.55 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.56 Total: 16.43 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.26 Total: 7.77 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.13 Total: -119.61 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.09 Total: -28.86 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.06 1.51 -75.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713740261.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.387 kcal (2) G-P(sol) polarization free energy of solvation -77.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds