Wall clock time and date at job start Tue Mar 31 2020 23:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47216 * 2 1 4 4 H 1.08996 * 109.47357 * 305.18439 * 3 2 1 5 5 C 1.53009 * 109.46893 * 185.18319 * 3 2 1 6 6 N 1.46500 * 109.46847 * 184.99929 * 5 3 2 7 7 C 1.34776 * 119.99818 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.52998 * 117.50021 * 248.78409 * 9 7 6 11 11 C 1.52998 * 117.49929 * 359.97438 * 10 9 7 12 12 C 1.52999 * 117.50128 * 145.01685 * 10 9 7 13 13 C 1.53004 * 117.50059 * 180.12124 * 9 7 6 14 14 C 1.52999 * 117.49969 * 214.97840 * 13 9 7 15 15 C 1.52995 * 117.49765 * 359.97438 * 13 9 7 16 16 N 1.46898 * 109.47237 * 65.18806 * 3 2 1 17 17 C 1.46899 * 111.00360 * 59.09841 * 16 3 2 18 18 C 1.50694 * 109.47648 * 174.57973 * 17 16 3 19 19 O 1.21289 * 120.00036 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00517 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00455 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00095 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00074 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99878 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99896 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47387 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47339 * 119.99763 * 25 23 21 28 28 H 1.48503 * 109.46985 * 239.99798 * 25 23 21 29 29 H 1.09006 * 109.46920 * 294.99470 * 1 2 3 30 30 H 1.09005 * 109.47264 * 54.98662 * 1 2 3 31 31 H 1.08997 * 109.47471 * 174.99067 * 1 2 3 32 32 H 1.09004 * 109.46990 * 239.99574 * 2 1 3 33 33 H 1.09001 * 109.46755 * 120.00621 * 2 1 3 34 34 H 1.08995 * 109.47295 * 305.00056 * 5 3 2 35 35 H 1.08995 * 109.46779 * 65.00566 * 5 3 2 36 36 H 0.97003 * 120.00374 * 0.02562 * 6 5 3 37 37 H 1.09000 * 115.55089 * 34.45173 * 9 7 6 38 38 H 1.08998 * 109.47613 * 111.38787 * 11 10 9 39 39 H 1.09000 * 109.47495 * 231.39539 * 11 10 9 40 40 H 1.09006 * 109.46737 * 351.39053 * 11 10 9 41 41 H 1.09000 * 109.47153 * 8.61266 * 12 10 9 42 42 H 1.09006 * 109.46928 * 128.60566 * 12 10 9 43 43 H 1.09000 * 109.47379 * 248.61004 * 12 10 9 44 44 H 1.08997 * 109.46848 * 111.39757 * 14 13 9 45 45 H 1.09003 * 109.46949 * 231.39286 * 14 13 9 46 46 H 1.08998 * 109.47370 * 351.38846 * 14 13 9 47 47 H 1.09004 * 109.47152 * 57.74496 * 15 13 9 48 48 H 1.09001 * 109.47125 * 177.74220 * 15 13 9 49 49 H 1.08994 * 109.47257 * 297.74704 * 15 13 9 50 50 H 1.00901 * 111.00263 * 295.14809 * 16 3 2 51 51 H 1.09006 * 109.47116 * 294.58518 * 17 16 3 52 52 H 1.09004 * 109.47013 * 54.57847 * 17 16 3 53 53 H 0.97008 * 119.99635 * 0.02562 * 20 18 17 54 54 H 0.97006 * 120.00018 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6028 1.9824 -0.8399 5 6 3.5645 1.4443 -0.1303 6 7 4.0631 2.8166 -0.0106 7 6 5.3854 3.0629 -0.0952 8 8 6.1626 2.1486 -0.2709 9 6 5.8984 4.4745 0.0285 10 6 6.4910 5.1231 -1.2241 11 6 6.5179 4.2888 -2.5063 12 6 6.2640 6.6238 -1.4173 13 6 7.4095 4.6890 -0.0791 14 6 8.0302 5.7890 0.7844 15 6 8.2842 3.4539 -0.3034 16 7 1.6553 2.0978 1.2571 17 6 2.2101 1.3835 2.4146 18 6 1.9084 2.1553 3.6732 19 8 1.2913 3.1977 3.6122 20 7 2.3233 1.6869 4.8669 21 6 2.0483 2.3888 6.0120 22 1 1.4996 3.3174 5.9575 23 6 2.4765 1.9060 7.2426 24 7 3.1446 0.7764 7.3088 25 14 2.1025 2.8628 8.8027 26 1 1.3438 4.0924 8.4594 27 1 1.2920 2.0200 9.7180 28 1 3.3748 3.2371 9.4708 29 1 -0.3633 0.4343 0.9315 30 1 -0.3634 0.5897 -0.8417 31 1 -0.3634 -1.0237 -0.0897 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.9974 0.8302 0.6593 35 1 3.8465 1.0388 -1.1019 36 1 3.4415 3.5480 0.1296 37 1 5.3466 5.1168 0.7147 38 1 5.8197 4.7107 -3.2291 39 1 7.5243 4.2983 -2.9250 40 1 6.2290 3.2628 -2.2782 41 1 5.8179 7.0429 -0.5154 42 1 7.2182 7.1135 -1.6120 43 1 5.5942 6.7841 -2.2622 44 1 8.6557 5.3371 1.5542 45 1 8.6387 6.4421 0.1588 46 1 7.2383 6.3716 1.2552 47 1 7.9687 2.9459 -1.2148 48 1 9.3261 3.7591 -0.3997 49 1 8.1808 2.7766 0.5443 50 1 0.6522 2.1800 1.3299 51 1 1.7608 0.3925 2.4795 52 1 3.2895 1.2861 2.2981 53 1 2.8165 0.8530 4.9158 54 1 3.4433 0.4391 8.1679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714064754.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:37 Heat of formation + Delta-G solvation = -86.823312 kcal Electronic energy + Delta-G solvation = -30916.290311 eV Core-core repulsion = 26887.281773 eV Total energy + Delta-G solvation = -4029.008538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65785 -40.41098 -39.25318 -38.23276 -35.96537 -35.05441 -33.32266 -32.79921 -32.06806 -30.31987 -29.53947 -28.84109 -27.91280 -27.10331 -26.08345 -24.60925 -22.67210 -21.77016 -20.91715 -20.25337 -19.82594 -18.72491 -18.32723 -17.85649 -17.15395 -16.79490 -16.52791 -16.36585 -15.90303 -15.87034 -15.57329 -15.41333 -15.08142 -14.96828 -14.66081 -14.48739 -14.14383 -13.98319 -13.76577 -13.54527 -13.49638 -13.33209 -13.23373 -13.17601 -13.07589 -12.90510 -12.85597 -12.74541 -12.65529 -12.60761 -12.41295 -12.27825 -12.12461 -11.84837 -11.69878 -11.66003 -11.51281 -10.76808 -10.71611 -10.35527 -10.18092 -10.02090 -9.92670 -9.34217 -8.47483 -5.96354 1.35442 1.40399 1.54776 1.56227 2.04751 2.24395 2.29379 2.72371 2.93643 3.19691 3.51557 3.62840 3.68713 3.71122 3.75186 4.01406 4.09904 4.15238 4.19540 4.27060 4.29510 4.34559 4.45348 4.51747 4.56934 4.57723 4.71062 4.75957 4.77996 4.79142 4.81829 4.93050 4.96748 4.98921 5.02932 5.04801 5.10100 5.11872 5.15829 5.20312 5.24241 5.33684 5.36479 5.39914 5.42498 5.55677 5.62506 5.87167 6.07707 6.39815 6.58509 6.67314 7.11797 7.35222 7.55442 8.10178 8.70294 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008596 B = 0.003218 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.450942 B = 8700.056502 C =10876.626830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.085 3.915 4 H 0.112 0.888 5 C 0.128 3.872 6 N -0.707 5.707 7 C 0.539 3.461 8 O -0.573 6.573 9 C -0.200 4.200 10 C -0.077 4.077 11 C -0.121 4.121 12 C -0.113 4.113 13 C -0.096 4.096 14 C -0.114 4.114 15 C -0.100 4.100 16 N -0.663 5.663 17 C 0.064 3.936 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.038 0.962 50 H 0.352 0.648 51 H 0.065 0.935 52 H 0.088 0.912 53 H 0.393 0.607 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 4.359 -20.902 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.129 0.871 5 C 0.004 3.996 6 N -0.358 5.358 7 C 0.327 3.673 8 O -0.454 6.454 9 C -0.221 4.221 10 C -0.078 4.078 11 C -0.178 4.178 12 C -0.170 4.170 13 C -0.096 4.096 14 C -0.170 4.170 15 C -0.157 4.157 16 N -0.296 5.296 17 C -0.068 4.068 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.249 0.751 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.057 0.943 50 H 0.172 0.828 51 H 0.083 0.917 52 H 0.106 0.894 53 H 0.226 0.774 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.397 4.757 -20.928 22.130 hybrid contribution -0.839 -0.948 1.531 1.987 sum 4.558 3.808 -19.397 20.286 Atomic orbital electron populations 1.21740 0.94718 1.02553 1.01765 1.22170 0.97113 0.96952 1.03347 1.21960 0.93515 0.94396 0.92659 0.87063 1.21412 0.93466 0.83358 1.01380 1.45826 1.07095 1.10313 1.72529 1.19940 0.82183 0.90060 0.75145 1.90655 1.56321 1.47334 1.51082 1.22795 0.99024 0.94788 1.05482 1.21800 1.00339 0.96722 0.88941 1.21448 1.02802 0.98548 0.94993 1.21406 1.02750 0.90199 1.02633 1.21800 0.88890 0.98517 1.00433 1.21366 1.00752 0.96318 0.98613 1.21268 0.97752 0.94719 1.01920 1.60142 1.17915 1.51751 0.99827 1.21490 1.01245 0.95282 0.88785 1.20826 0.83436 0.87484 0.85407 1.90481 1.45944 1.26602 1.87238 1.41968 1.50513 1.23421 1.05451 1.19707 1.34982 1.06325 0.85058 0.90138 1.26060 0.96110 0.97293 1.01965 1.69691 1.38143 1.20885 1.27657 0.84872 0.78247 0.78086 0.77156 1.19544 1.19567 1.19779 0.94135 0.91154 0.91750 0.89462 0.92357 0.93486 0.90379 0.75133 0.86107 0.90707 0.91089 0.93627 0.92044 0.90513 0.90911 0.92463 0.90020 0.92070 0.92004 0.92029 0.94335 0.82795 0.91714 0.89417 0.77369 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.57 71.98 0.69 -1.88 16 2 C -0.16 -2.81 5.17 30.59 0.16 -2.65 16 3 C 0.08 1.72 2.70 44.92 0.12 1.84 16 4 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 5 C 0.13 3.02 4.69 86.38 0.41 3.43 16 6 N -0.71 -18.14 5.39 -463.06 -2.50 -20.63 16 7 C 0.54 15.47 6.22 87.66 0.55 16.01 16 8 O -0.57 -19.41 12.23 -3.03 -0.04 -19.44 16 9 C -0.20 -4.88 5.48 -11.54 -0.06 -4.95 16 10 C -0.08 -1.48 2.70 -52.16 -0.14 -1.62 16 11 C -0.12 -2.25 8.20 71.98 0.59 -1.66 16 12 C -0.11 -1.59 8.88 71.98 0.64 -0.95 16 13 C -0.10 -2.14 2.70 -52.16 -0.14 -2.28 16 14 C -0.11 -2.11 8.86 71.98 0.64 -1.47 16 15 C -0.10 -2.49 7.87 71.98 0.57 -1.93 16 16 N -0.66 -18.59 5.36 -495.59 -2.66 -21.24 16 17 C 0.06 2.20 5.34 85.56 0.46 2.66 16 18 C 0.44 20.90 7.83 87.66 0.69 21.59 16 19 O -0.62 -33.34 15.89 -3.06 -0.05 -33.39 16 20 N -0.58 -30.06 5.29 -307.00 -1.62 -31.68 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 25 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.04 0.83 7.14 -2.38 -0.02 0.81 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.06 1.22 6.24 -2.39 -0.01 1.20 16 34 H 0.05 1.31 6.58 -2.39 -0.02 1.30 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.41 10.21 8.14 -92.71 -0.75 9.45 16 37 H 0.12 2.92 7.96 -2.39 -0.02 2.90 16 38 H 0.07 1.13 7.93 -2.39 -0.02 1.11 16 39 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 40 H 0.04 1.07 5.26 -2.38 -0.01 1.06 16 41 H 0.06 0.88 7.78 -2.39 -0.02 0.86 16 42 H 0.08 0.90 8.02 -2.38 -0.02 0.88 16 43 H 0.07 0.87 7.93 -2.39 -0.02 0.85 16 44 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 45 H 0.08 1.18 8.02 -2.39 -0.02 1.16 16 46 H 0.06 1.11 7.78 -2.39 -0.02 1.09 16 47 H 0.06 1.64 5.05 -2.38 -0.01 1.62 16 48 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 49 H 0.04 1.16 7.40 -2.39 -0.02 1.14 16 50 H 0.35 10.12 7.35 -89.69 -0.66 9.46 16 51 H 0.07 2.00 6.48 -2.38 -0.02 1.99 16 52 H 0.09 3.03 6.16 -2.39 -0.01 3.01 16 53 H 0.39 19.88 7.90 -92.70 -0.73 19.15 16 54 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -69.36 418.97 0.66 -68.70 By element: Atomic # 1 Polarization: 56.41 SS G_CDS: -1.22 Total: 55.19 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.43 Total: 7.63 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -6.49 Total: -124.10 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.09 Total: -52.84 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -69.36 0.66 -68.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714064754.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.121 kcal (2) G-P(sol) polarization free energy of solvation -69.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds