Wall clock time and date at job start Tue Mar 31 2020 23:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47359 * 2 1 4 4 H 1.09002 * 109.47087 * 304.25750 * 3 2 1 5 5 C 1.52998 * 109.47279 * 184.25962 * 3 2 1 6 6 N 1.46504 * 109.46996 * 184.99766 * 5 3 2 7 7 C 1.34775 * 119.99853 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00090 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99948 * 180.02562 * 7 6 5 10 10 H 1.08995 * 115.55171 * 34.27230 * 9 7 6 11 11 C 1.53008 * 117.49675 * 248.60497 * 9 7 6 12 12 C 1.52995 * 59.99835 * 252.50901 * 11 9 7 13 13 H 1.09004 * 117.49735 * 107.49125 * 12 11 9 14 14 C 1.52999 * 117.49931 * 252.50752 * 12 11 9 15 15 C 1.53003 * 109.47156 * 128.62444 * 14 12 11 16 16 C 1.53000 * 109.47251 * 248.62438 * 14 12 11 17 17 C 1.53004 * 109.47024 * 8.62644 * 14 12 11 18 18 N 1.46892 * 109.47056 * 64.25663 * 3 2 1 19 19 C 1.46901 * 110.99951 * 65.55165 * 18 3 2 20 20 C 1.50697 * 109.47085 * 183.45574 * 19 18 3 21 21 O 1.21290 * 120.00317 * 0.02562 * 20 19 18 22 22 N 1.34784 * 120.00035 * 179.97438 * 20 19 18 23 23 C 1.37098 * 120.00109 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00122 * 359.97438 * 23 22 20 25 25 C 1.38952 * 120.00077 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99826 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99970 * 179.72266 * 25 23 22 28 28 H 1.48497 * 109.47195 * 270.27428 * 27 25 23 29 29 H 1.48498 * 109.47281 * 30.27545 * 27 25 23 30 30 H 1.48506 * 109.46896 * 150.27486 * 27 25 23 31 31 H 1.09001 * 109.47284 * 174.73601 * 1 2 3 32 32 H 1.09006 * 109.46939 * 294.73833 * 1 2 3 33 33 H 1.08996 * 109.47463 * 54.73409 * 1 2 3 34 34 H 1.09006 * 109.47454 * 239.99842 * 2 1 3 35 35 H 1.09006 * 109.47559 * 119.99785 * 2 1 3 36 36 H 1.08990 * 109.47409 * 304.99971 * 5 3 2 37 37 H 1.09000 * 109.47231 * 65.00226 * 5 3 2 38 38 H 0.97000 * 119.99915 * 359.97438 * 6 5 3 39 39 H 1.08999 * 117.49871 * 0.02562 * 11 9 7 40 40 H 1.08998 * 117.49677 * 145.01353 * 11 9 7 41 41 H 1.08999 * 109.46770 * 59.99990 * 15 14 12 42 42 H 1.08995 * 109.46878 * 180.02562 * 15 14 12 43 43 H 1.08997 * 109.47211 * 300.00294 * 15 14 12 44 44 H 1.09005 * 109.47058 * 60.00302 * 16 14 12 45 45 H 1.09007 * 109.46941 * 179.97438 * 16 14 12 46 46 H 1.08998 * 109.47255 * 299.99564 * 16 14 12 47 47 H 1.08997 * 109.47050 * 59.99886 * 17 14 12 48 48 H 1.09002 * 109.47025 * 180.02562 * 17 14 12 49 49 H 1.09005 * 109.46580 * 299.99957 * 17 14 12 50 50 H 1.00899 * 111.00026 * 189.50246 * 18 3 2 51 51 H 1.09001 * 109.46943 * 63.46331 * 19 18 3 52 52 H 1.08999 * 109.47388 * 303.46027 * 19 18 3 53 53 H 0.96999 * 119.99807 * 0.02562 * 22 20 19 54 54 H 0.97003 * 119.99876 * 359.72171 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5662 1.4438 -0.1071 6 7 4.0630 2.8168 0.0127 7 6 5.3865 3.0627 -0.0531 8 8 6.1662 2.1474 -0.2111 9 6 5.8975 4.4750 0.0708 10 1 5.3335 5.1218 0.7427 11 6 6.5129 5.1155 -1.1752 12 6 7.4102 4.6887 -0.0118 13 1 8.0359 3.8078 -0.1557 14 6 8.0160 5.7940 0.8555 15 6 7.7289 5.5008 2.3295 16 6 9.5285 5.8471 0.6312 17 6 7.3961 7.1396 0.4731 18 7 1.6361 2.1046 1.2475 19 6 2.2957 1.4899 2.4072 20 6 1.7939 2.1374 3.6721 21 8 0.9677 3.0234 3.6133 22 7 2.2624 1.7312 4.8688 23 6 1.8055 2.3199 6.0196 24 1 1.0705 3.1094 5.9672 25 6 2.2889 1.9015 7.2533 26 7 3.1844 0.9419 7.3169 27 14 1.6721 2.7089 8.8208 28 1 2.5335 3.8727 9.1502 29 1 0.2737 3.1681 8.6239 30 1 1.7187 1.7276 9.9344 31 1 -0.3634 -1.0233 -0.0943 32 1 -0.3633 0.4301 0.9334 33 1 -0.3634 0.5933 -0.8390 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.9871 0.8341 0.6922 37 1 3.8631 1.0330 -1.0722 38 1 3.4393 3.5490 0.1387 39 1 6.5476 4.5154 -2.0845 40 1 6.3539 6.1836 -1.3226 41 1 8.1705 4.5422 2.6018 42 1 8.1600 6.2885 2.9472 43 1 6.6514 5.4629 2.4892 44 1 9.7330 6.0561 -0.4189 45 1 9.9600 6.6349 1.2488 46 1 9.9701 4.8885 0.9037 47 1 6.3186 7.1018 0.6329 48 1 7.8280 7.9272 1.0907 49 1 7.6007 7.3485 -0.5770 50 1 1.8234 3.0953 1.2081 51 1 3.3737 1.6317 2.3295 52 1 2.0703 0.4237 2.4306 53 1 2.9229 1.0224 4.9158 54 1 3.5050 0.5229 6.5029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714089219.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:13 Heat of formation + Delta-G solvation = -90.638371 kcal Electronic energy + Delta-G solvation = -30577.508545 eV Core-core repulsion = 26548.334574 eV Total energy + Delta-G solvation = -4029.173971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47556 -40.52113 -39.53078 -38.52504 -36.36668 -35.08559 -34.81530 -33.35964 -32.95528 -29.94702 -28.36562 -28.16683 -28.03875 -26.12354 -25.53053 -23.88930 -23.54415 -22.09190 -21.29627 -20.59641 -19.94002 -19.36625 -18.81982 -18.44787 -17.22192 -17.05597 -16.75066 -16.68659 -16.29248 -15.73730 -15.60973 -15.55295 -15.19320 -14.98834 -14.80484 -14.67091 -14.49030 -14.17572 -13.90056 -13.77220 -13.54652 -13.35710 -13.23528 -13.16878 -12.82503 -12.70226 -12.65811 -12.52234 -12.35644 -12.13001 -12.00856 -11.94816 -11.91073 -11.85894 -11.60170 -11.54098 -11.52252 -11.27209 -11.02062 -10.88268 -10.43433 -10.24257 -10.12094 -9.46023 -8.93856 -6.07859 1.38713 1.50878 1.53698 1.80950 1.98344 2.01395 2.39199 2.76618 2.80394 3.15620 3.36267 3.51131 3.63776 3.69371 3.75726 3.92211 3.96094 4.05354 4.10002 4.19189 4.21592 4.24550 4.26852 4.32885 4.45772 4.54683 4.59795 4.61616 4.71864 4.74627 4.77456 4.87834 4.89092 4.92585 4.94116 5.03477 5.07390 5.13711 5.14628 5.17430 5.27834 5.32354 5.34092 5.42624 5.50324 5.51238 5.58524 5.87274 5.94685 6.28569 6.37093 6.55644 6.73153 7.10339 7.42857 7.90196 8.53291 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007222 B = 0.003398 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3876.034580 B = 8237.949922 C =11256.748175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.114 0.886 5 C 0.085 3.915 6 N -0.718 5.718 7 C 0.539 3.461 8 O -0.583 6.583 9 C -0.199 4.199 10 H 0.132 0.868 11 C -0.128 4.128 12 C -0.111 4.111 13 H 0.093 0.907 14 C -0.037 4.037 15 C -0.144 4.144 16 C -0.137 4.137 17 C -0.145 4.145 18 N -0.658 5.658 19 C 0.064 3.936 20 C 0.445 3.555 21 O -0.611 6.611 22 N -0.589 5.589 23 C -0.408 4.408 24 H 0.075 0.925 25 C -0.043 4.043 26 N -0.918 5.918 27 Si 1.135 2.865 28 H -0.270 1.270 29 H -0.275 1.275 30 H -0.274 1.274 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.409 0.591 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.345 0.655 51 H 0.054 0.946 52 H 0.101 0.899 53 H 0.381 0.619 54 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.459 7.420 -19.817 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.132 0.868 5 C -0.041 4.041 6 N -0.369 5.369 7 C 0.328 3.672 8 O -0.464 6.464 9 C -0.220 4.220 10 H 0.150 0.850 11 C -0.165 4.165 12 C -0.130 4.130 13 H 0.111 0.889 14 C -0.037 4.037 15 C -0.201 4.201 16 C -0.194 4.194 17 C -0.202 4.202 18 N -0.290 5.290 19 C -0.068 4.068 20 C 0.233 3.767 21 O -0.497 6.497 22 N -0.228 5.228 23 C -0.537 4.537 24 H 0.093 0.907 25 C -0.241 4.241 26 N -0.557 5.557 27 Si 0.955 3.045 28 H -0.196 1.196 29 H -0.201 1.201 30 H -0.199 1.199 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.245 0.755 39 H 0.113 0.887 40 H 0.153 0.847 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.165 0.835 51 H 0.072 0.928 52 H 0.119 0.881 53 H 0.215 0.785 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.985 6.976 -18.238 20.738 hybrid contribution 0.794 -0.236 -1.292 1.535 sum 7.780 6.740 -19.529 22.076 Atomic orbital electron populations 1.21572 0.94856 1.01291 1.01817 1.21546 0.97003 0.93971 1.02667 1.22052 0.90162 0.97645 0.92407 0.86849 1.22140 0.96477 0.83099 1.02348 1.45876 1.07202 1.10096 1.73763 1.20159 0.82022 0.90441 0.74613 1.90667 1.56892 1.47582 1.51238 1.22279 0.99137 0.94051 1.06563 0.84984 1.23298 0.99683 1.02605 0.90877 1.22413 0.89790 1.00277 1.00502 0.88865 1.20101 0.96186 0.93882 0.93517 1.21888 1.01129 1.01255 0.95834 1.21824 0.93390 1.01765 1.02425 1.22028 1.00664 0.95106 1.02408 1.60186 1.60689 1.07625 1.00525 1.21528 0.96528 1.00103 0.88673 1.20782 0.84741 0.85896 0.85320 1.90493 1.36949 1.34833 1.87406 1.42027 1.39580 1.35315 1.05829 1.20546 1.26074 1.20765 0.86347 0.90682 1.27838 0.95197 0.96699 1.04353 1.70946 1.29396 1.24342 1.31042 0.82607 0.76015 0.75290 0.70600 1.19553 1.20054 1.19860 0.92447 0.94250 0.91904 0.89232 0.92719 0.92927 0.90295 0.75495 0.88653 0.84728 0.94043 0.91559 0.93572 0.91533 0.91587 0.93476 0.92466 0.91871 0.90732 0.83521 0.92801 0.88069 0.78534 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.73 71.98 0.70 -2.17 16 2 C -0.11 -2.20 5.31 30.59 0.16 -2.04 16 3 C 0.09 1.75 2.71 44.92 0.12 1.87 16 4 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 5 C 0.08 1.85 4.47 86.38 0.39 2.23 16 6 N -0.72 -15.62 5.31 -463.07 -2.46 -18.08 16 7 C 0.54 14.03 7.61 87.66 0.67 14.70 16 8 O -0.58 -19.80 16.26 -3.04 -0.05 -19.85 16 9 C -0.20 -4.01 5.04 -11.54 -0.06 -4.07 16 10 H 0.13 2.43 7.07 -2.39 -0.02 2.41 16 11 C -0.13 -1.94 9.27 30.60 0.28 -1.65 16 12 C -0.11 -2.17 4.66 -10.80 -0.05 -2.22 16 13 H 0.09 2.28 7.64 -2.38 -0.02 2.26 16 14 C -0.04 -0.61 0.88 -52.18 -0.05 -0.66 16 15 C -0.14 -2.95 8.31 71.98 0.60 -2.35 16 16 C -0.14 -2.02 8.46 71.98 0.61 -1.42 16 17 C -0.15 -1.84 7.07 71.98 0.51 -1.34 16 18 N -0.66 -18.35 5.41 -495.59 -2.68 -21.03 16 19 C 0.06 2.16 5.30 85.56 0.45 2.62 16 20 C 0.44 20.96 7.83 87.65 0.69 21.64 16 21 O -0.61 -33.17 15.85 -3.06 -0.05 -33.22 16 22 N -0.59 -30.30 5.28 -306.98 -1.62 -31.92 16 23 C -0.41 -23.47 9.68 84.04 0.81 -22.65 16 24 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 25 C -0.04 -2.35 5.50 84.93 0.47 -1.89 16 26 N -0.92 -52.13 13.68 21.66 0.30 -51.84 16 27 Si 1.14 48.92 29.92 68.60 2.05 50.97 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 30 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.07 7.88 -2.38 -0.02 1.05 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.05 1.20 6.28 -2.38 -0.01 1.18 16 36 H 0.05 1.38 6.71 -2.39 -0.02 1.36 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 7.44 7.23 -92.71 -0.67 6.77 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.13 1.40 5.85 -2.39 -0.01 1.38 16 41 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.05 1.03 7.29 -2.39 -0.02 1.01 16 44 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.74 7.07 -2.39 -0.02 0.72 16 48 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 49 H 0.07 0.74 6.98 -2.38 -0.02 0.72 16 50 H 0.35 9.62 7.29 -89.69 -0.65 8.96 16 51 H 0.05 1.76 6.49 -2.39 -0.02 1.75 16 52 H 0.10 3.20 6.22 -2.39 -0.01 3.19 16 53 H 0.38 18.45 6.73 -92.71 -0.62 17.83 16 54 H 0.26 14.28 6.78 -92.71 -0.63 13.65 16 Total: -1.00 -74.39 423.24 0.90 -73.48 By element: Atomic # 1 Polarization: 51.77 SS G_CDS: -0.89 Total: 50.88 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 6.30 Total: 0.61 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.46 Total: -122.87 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.10 Total: -53.07 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.05 Total: 50.97 kcal Total: -74.39 0.90 -73.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714089219.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.155 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds