Wall clock time and date at job start Tue Mar 31 2020 22:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47695 * 2 1 4 4 H 1.09005 * 109.46553 * 305.00527 * 3 2 1 5 5 C 1.53003 * 109.46999 * 64.99879 * 3 2 1 6 6 C 1.50699 * 109.47281 * 185.00348 * 3 2 1 7 7 O 1.21278 * 120.00078 * 334.73818 * 6 3 2 8 8 N 1.34779 * 119.99800 * 154.74541 * 6 3 2 9 9 C 1.46926 * 120.63053 * 4.93608 * 8 6 3 10 10 C 1.53629 * 108.53867 * 126.36917 * 9 8 6 11 11 C 1.53035 * 109.24113 * 54.85908 * 10 9 8 12 12 C 1.53003 * 109.45908 * 178.48682 * 11 10 9 13 13 H 1.08998 * 109.47555 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47163 * 60.06758 * 12 11 10 15 15 N 1.46895 * 109.47193 * 300.06891 * 12 11 10 16 16 C 1.46910 * 110.99984 * 205.00002 * 15 12 11 17 17 C 1.50701 * 109.46987 * 179.97438 * 16 15 12 18 18 O 1.21295 * 120.00025 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00136 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99908 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00341 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99806 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00208 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47209 * 90.00190 * 24 22 20 26 26 H 1.48499 * 109.47423 * 210.00084 * 24 22 20 27 27 H 1.48502 * 109.47427 * 330.00439 * 24 22 20 28 28 C 1.53041 * 109.53839 * 298.50448 * 11 10 9 29 29 C 1.46928 * 120.62949 * 185.21765 * 8 6 3 30 30 H 1.08997 * 109.46712 * 59.99634 * 1 2 3 31 31 H 1.08995 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46623 * 300.00235 * 1 2 3 33 33 H 1.09005 * 109.46623 * 239.99765 * 2 1 3 34 34 H 1.08997 * 109.47224 * 120.00494 * 2 1 3 35 35 H 1.08997 * 109.46645 * 54.88279 * 5 3 2 36 36 H 1.09006 * 109.46941 * 294.88558 * 5 3 2 37 37 H 1.08995 * 109.47241 * 174.88480 * 5 3 2 38 38 H 1.08991 * 109.58724 * 246.20292 * 9 8 6 39 39 H 1.09000 * 109.58699 * 6.62908 * 9 8 6 40 40 H 1.09000 * 109.63661 * 294.86218 * 10 9 8 41 41 H 1.09004 * 109.45763 * 174.73967 * 10 9 8 42 42 H 1.08997 * 109.46259 * 58.52996 * 11 10 9 43 43 H 1.09006 * 109.47161 * 300.00180 * 14 12 11 44 44 H 1.08999 * 109.46916 * 59.99914 * 14 12 11 45 45 H 1.09001 * 109.47396 * 179.97438 * 14 12 11 46 46 H 1.00894 * 111.00259 * 81.04418 * 15 12 11 47 47 H 1.09001 * 109.46820 * 299.99738 * 16 15 12 48 48 H 1.09001 * 109.46881 * 59.99791 * 16 15 12 49 49 H 0.97000 * 120.00077 * 359.97438 * 19 17 16 50 50 H 0.97002 * 120.00009 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.49944 * 301.42024 * 28 11 10 52 52 H 1.08996 * 109.49625 * 181.31626 * 28 11 10 53 53 H 1.08995 * 109.58397 * 353.37356 * 29 8 6 54 54 H 1.08993 * 109.58318 * 113.65307 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5421 1.4441 -0.1239 7 8 4.1821 0.4823 0.2451 8 7 4.1740 2.5146 -0.6447 9 6 3.4247 3.7286 -0.9960 10 6 4.0834 4.9283 -0.2982 11 6 5.5670 4.9761 -0.6706 12 6 6.2198 6.1911 -0.0083 13 1 7.2764 6.2257 -0.2737 14 6 6.0800 6.0802 1.5113 15 7 5.5571 7.4170 -0.4728 16 6 6.4569 8.5737 -0.3688 17 6 5.7441 9.8097 -0.8537 18 8 4.5994 9.7345 -1.2476 19 7 6.3790 10.9986 -0.8506 20 6 5.7305 12.1232 -1.2912 21 1 4.7109 12.0564 -1.6412 22 6 6.3848 13.3490 -1.2875 23 7 7.6252 13.4304 -0.8612 24 14 5.5013 14.8812 -1.8885 25 1 4.8048 15.5302 -0.7488 26 1 6.4888 15.8267 -2.4684 27 1 4.5079 14.5049 -2.9262 28 6 6.2576 3.6991 -0.1864 29 6 5.6245 2.4875 -0.8777 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.9932 1.5372 2.1516 36 1 0.5493 2.2066 1.3544 37 1 2.0753 3.1230 1.3474 38 1 3.4480 3.8726 -2.0761 39 1 2.3922 3.6306 -0.6605 40 1 3.9825 4.8244 0.7821 41 1 3.5972 5.8486 -0.6221 42 1 5.6674 5.0552 -1.7530 43 1 5.0235 6.0453 1.7774 44 1 6.5717 5.1706 1.8560 45 1 6.5455 6.9455 1.9831 46 1 4.6999 7.5790 0.0341 47 1 6.7548 8.7099 0.6708 48 1 7.3422 8.4014 -0.9809 49 1 7.2945 11.0587 -0.5359 50 1 8.0821 14.2860 -0.8589 51 1 6.1363 3.6067 0.8929 52 1 7.3188 3.7442 -0.4312 53 1 6.0438 1.5704 -0.4641 54 1 5.8233 2.5298 -1.9485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714808581.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:09 Heat of formation + Delta-G solvation = -115.656345 kcal Electronic energy + Delta-G solvation = -30234.153302 eV Core-core repulsion = 26203.894470 eV Total energy + Delta-G solvation = -4030.258832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.51334 -40.25912 -39.37331 -37.08809 -36.44238 -35.90987 -33.92932 -33.21443 -32.13878 -30.82211 -30.20479 -27.97688 -26.95677 -26.07642 -25.40408 -24.31387 -23.36493 -21.92126 -21.11218 -20.49954 -19.89802 -19.38030 -18.31826 -17.71918 -17.09575 -16.86203 -16.37542 -16.32028 -16.03802 -15.85889 -15.72672 -15.43771 -15.25249 -14.96456 -14.76566 -14.57916 -14.27901 -14.09125 -13.90748 -13.57161 -13.49551 -13.32112 -13.16321 -13.07404 -12.96132 -12.94223 -12.73575 -12.60233 -12.53398 -12.49906 -12.40475 -12.11914 -11.88044 -11.73996 -11.70728 -11.60425 -11.49163 -11.32799 -11.14197 -10.60842 -10.31205 -10.00025 -9.64501 -9.22585 -8.45545 -5.94091 1.38748 1.42616 1.55276 1.60298 2.02689 2.07362 2.29972 2.94346 3.21991 3.47240 3.54788 3.75621 3.81167 3.89905 3.98646 4.05526 4.14799 4.19817 4.31676 4.37337 4.38448 4.41288 4.48853 4.49705 4.52830 4.59690 4.61772 4.66170 4.69446 4.70895 4.82286 4.90522 4.92410 4.96240 4.99319 5.04614 5.10884 5.11907 5.15602 5.18900 5.25721 5.30026 5.36392 5.42108 5.47380 5.57943 5.62636 5.93924 6.16827 6.41729 6.49203 6.61550 7.13990 7.16425 7.58217 8.13230 8.71784 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.001889 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.471526 B =14821.606044 C =15601.216131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.108 4.108 4 H 0.112 0.888 5 C -0.141 4.141 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.608 5.608 9 C 0.105 3.895 10 C -0.126 4.126 11 C -0.066 4.066 12 C 0.090 3.910 13 H 0.081 0.919 14 C -0.182 4.182 15 N -0.671 5.671 16 C 0.065 3.935 17 C 0.439 3.561 18 O -0.621 6.621 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.273 1.273 28 C -0.120 4.120 29 C 0.109 3.891 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.344 0.656 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.065 0.935 52 H 0.086 0.914 53 H 0.075 0.925 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.178 -23.444 3.683 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.129 4.129 4 H 0.130 0.870 5 C -0.198 4.198 6 C 0.303 3.697 7 O -0.469 6.469 8 N -0.340 5.340 9 C -0.017 4.017 10 C -0.165 4.165 11 C -0.086 4.086 12 C -0.019 4.019 13 H 0.099 0.901 14 C -0.240 4.240 15 N -0.303 5.303 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.158 4.158 29 C -0.013 4.013 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.163 0.837 47 H 0.080 0.920 48 H 0.119 0.881 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.104 0.896 53 H 0.094 0.906 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.316 -23.923 2.952 25.190 hybrid contribution 0.527 1.161 0.810 1.510 sum -6.789 -22.763 3.762 24.050 Atomic orbital electron populations 1.21804 0.93494 1.02452 1.02828 1.21335 0.97076 0.93925 1.01880 1.21434 0.89811 0.99644 1.02039 0.87031 1.21812 1.03452 1.00080 0.94487 1.21277 0.91423 0.81453 0.75559 1.90644 1.69197 1.36270 1.50836 1.48270 1.08730 1.14805 1.62163 1.22057 0.96415 0.82720 1.00501 1.22013 0.95737 0.97999 1.00710 1.21011 0.94764 0.92483 1.00311 1.21629 0.98374 0.89015 0.92886 0.90056 1.22563 1.02403 1.02359 0.96708 1.60204 1.06785 1.01258 1.62037 1.21546 0.96162 0.88569 1.00443 1.20903 0.87638 0.85342 0.83495 1.90483 1.20313 1.86507 1.53449 1.41949 1.15412 1.06505 1.57347 1.19668 0.98925 0.86515 1.41115 0.90242 1.26039 0.96527 1.01668 0.97147 1.69675 1.11608 1.27730 1.47175 0.84930 0.77823 0.77095 0.78508 1.19652 1.19670 1.19736 1.21935 1.00350 0.93042 1.00515 1.21607 0.79812 0.99259 1.00647 0.91739 0.92179 0.91503 0.92919 0.92654 0.93089 0.89126 0.91800 0.90478 0.87795 0.91406 0.90449 0.90994 0.92136 0.90735 0.93396 0.83668 0.92020 0.88111 0.77064 0.91369 0.91618 0.89559 0.90648 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 71.98 0.70 -0.77 16 2 C -0.10 -1.56 4.85 30.60 0.15 -1.41 16 3 C -0.11 -1.55 1.85 -11.54 -0.02 -1.57 16 4 H 0.11 1.17 6.73 -2.38 -0.02 1.16 16 5 C -0.14 -1.69 8.50 71.98 0.61 -1.08 16 6 C 0.51 10.74 6.80 87.66 0.60 11.33 16 7 O -0.59 -17.07 15.62 -3.02 -0.05 -17.12 16 8 N -0.61 -10.81 2.97 -818.08 -2.43 -13.24 16 9 C 0.11 1.50 5.95 86.51 0.51 2.02 16 10 C -0.13 -2.12 4.74 30.82 0.15 -1.98 16 11 C -0.07 -1.19 2.17 -10.77 -0.02 -1.21 16 12 C 0.09 1.86 2.42 44.92 0.11 1.97 16 13 H 0.08 1.63 7.80 -2.39 -0.02 1.61 16 14 C -0.18 -3.35 8.46 71.98 0.61 -2.74 16 15 N -0.67 -19.22 5.38 -495.55 -2.67 -21.89 16 16 C 0.07 2.14 5.97 85.56 0.51 2.65 16 17 C 0.44 20.35 7.82 87.66 0.69 21.04 16 18 O -0.62 -33.45 15.78 -3.08 -0.05 -33.50 16 19 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 20 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 24 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C -0.12 -1.89 4.96 30.67 0.15 -1.73 16 29 C 0.11 1.93 6.44 86.36 0.56 2.48 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.56 6.68 -2.38 -0.02 0.54 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 1.01 8.03 -2.39 -0.02 0.99 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.74 6.82 -2.38 -0.02 0.72 16 37 H 0.06 0.75 7.20 -2.39 -0.02 0.73 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.12 4.89 -2.39 -0.01 1.11 16 40 H 0.07 1.12 6.51 -2.39 -0.02 1.10 16 41 H 0.08 1.54 7.14 -2.39 -0.02 1.52 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.11 6.45 -2.38 -0.02 1.10 16 44 H 0.07 1.19 6.46 -2.39 -0.02 1.17 16 45 H 0.05 0.95 7.45 -2.39 -0.02 0.94 16 46 H 0.34 10.42 7.39 -89.70 -0.66 9.76 16 47 H 0.06 1.81 7.44 -2.39 -0.02 1.79 16 48 H 0.10 3.02 8.06 -2.39 -0.02 3.00 16 49 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 50 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 51 H 0.07 1.10 6.51 -2.39 -0.02 1.09 16 52 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.08 1.58 7.00 -2.39 -0.02 1.56 16 54 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.09 411.79 1.58 -68.51 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.49 Total: 41.67 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.57 Total: 10.82 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -6.43 Total: -114.97 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.10 Total: -50.61 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.09 1.58 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714808581.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.145 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds