Wall clock time and date at job start Tue Mar 31 2020 23:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 H 1.09000 * 109.47115 * 304.99970 * 3 2 1 5 5 C 1.50706 * 109.47003 * 185.00539 * 3 2 1 6 6 O 1.21283 * 119.99639 * 240.00068 * 5 3 2 7 7 N 1.34772 * 119.99965 * 60.00060 * 5 3 2 8 8 C 1.46504 * 119.99825 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47103 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47073 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.46900 * 180.02562 * 10 9 8 12 12 C 1.36946 * 119.99902 * 90.00454 * 11 10 9 13 13 H 1.07998 * 119.99979 * 217.14645 * 12 11 10 14 14 C 1.38813 * 119.99894 * 37.14175 * 12 11 10 15 15 N 1.31616 * 120.00138 * 21.26592 * 14 12 11 16 16 Si 1.86794 * 119.99916 * 201.26802 * 14 12 11 17 17 H 1.48500 * 109.47461 * 59.99848 * 16 14 12 18 18 H 1.48497 * 109.47571 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47173 * 300.00007 * 16 14 12 20 20 C 1.46501 * 120.00206 * 269.99696 * 11 10 9 21 21 C 1.53007 * 109.46648 * 114.90779 * 20 11 10 22 22 C 1.53000 * 109.47316 * 234.90475 * 20 11 10 23 23 N 1.46495 * 109.46948 * 65.00193 * 3 2 1 24 24 C 1.46766 * 124.34838 * 239.99761 * 23 3 2 25 25 C 1.54477 * 105.47240 * 197.02018 * 24 23 3 26 26 C 1.54631 * 101.76835 * 334.58692 * 25 24 23 27 27 C 1.34420 * 124.34803 * 59.70591 * 23 3 2 28 28 O 1.21282 * 124.94282 * 359.55870 * 27 23 3 29 29 H 1.09000 * 109.46957 * 300.00091 * 1 2 3 30 30 H 1.08994 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47567 * 59.99505 * 1 2 3 32 32 H 1.08999 * 109.47567 * 120.00495 * 2 1 3 33 33 H 1.09000 * 109.47082 * 240.00450 * 2 1 3 34 34 H 0.97002 * 120.00425 * 359.97438 * 7 5 3 35 35 H 1.08998 * 109.46850 * 300.00295 * 8 7 5 36 36 H 1.09000 * 109.46916 * 59.99545 * 8 7 5 37 37 H 1.08994 * 109.47362 * 300.00091 * 9 8 7 38 38 H 1.08996 * 109.46767 * 60.00195 * 9 8 7 39 39 H 1.08998 * 109.46999 * 300.00791 * 10 9 8 40 40 H 1.09000 * 109.46797 * 60.00059 * 10 9 8 41 41 H 0.96997 * 120.00248 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.47041 * 354.90956 * 20 11 10 43 43 H 1.08990 * 109.47005 * 63.31444 * 21 20 11 44 44 H 1.08995 * 109.46531 * 183.31396 * 21 20 11 45 45 H 1.08996 * 109.46894 * 303.30941 * 21 20 11 46 46 H 1.09000 * 109.46676 * 61.62052 * 22 20 11 47 47 H 1.08995 * 109.46845 * 181.62037 * 22 20 11 48 48 H 1.08998 * 109.47342 * 301.62538 * 22 20 11 49 49 H 1.08997 * 110.24671 * 316.01929 * 24 23 3 50 50 H 1.08994 * 110.24372 * 78.02208 * 24 23 3 51 51 H 1.09006 * 110.97292 * 92.70538 * 25 24 23 52 52 H 1.09003 * 110.97094 * 216.46428 * 25 24 23 53 53 H 1.08994 * 110.49297 * 143.47858 * 26 25 24 54 54 H 1.09000 * 110.48181 * 265.99150 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1240 6 8 4.2217 1.9435 0.7476 7 7 4.1297 0.8912 -1.2033 8 6 5.5898 0.8925 -1.3235 9 6 5.9944 0.2080 -2.6307 10 6 7.5193 0.2099 -2.7565 11 7 7.9067 -0.4449 -4.0084 12 6 8.0403 0.2930 -5.1543 13 1 7.7345 -0.1226 -6.1030 14 6 8.5688 1.5753 -5.0964 15 7 9.3128 1.9348 -4.0719 16 14 8.2239 2.7907 -6.4723 17 1 6.7594 3.0108 -6.5828 18 1 8.8976 4.0800 -6.1745 19 1 8.7408 2.2471 -7.7540 20 6 8.1514 -1.8891 -4.0345 21 6 7.1028 -2.5680 -4.9180 22 6 9.5471 -2.1598 -4.5999 23 7 1.6525 2.0974 1.2518 24 6 0.8076 3.2948 1.3329 25 6 1.0292 3.8600 2.7534 26 6 1.4534 2.5944 3.5339 27 6 2.0204 1.6757 2.4739 28 8 2.7087 0.7018 2.6946 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.5860 0.4916 -1.9002 35 1 5.9534 1.9200 -1.3232 36 1 6.0241 0.3531 -0.4817 37 1 5.6308 -0.8195 -2.6305 38 1 5.5601 0.7471 -3.4726 39 1 7.8826 1.2376 -2.7567 40 1 7.9540 -0.3288 -1.9146 41 1 9.6824 2.8307 -4.0316 42 1 8.0861 -2.2870 -3.0218 43 1 7.2068 -2.2133 -5.9433 44 1 7.2487 -3.6478 -4.8905 45 1 6.1059 -2.3267 -4.5493 46 1 10.2958 -1.7003 -3.9546 47 1 9.7180 -3.2353 -4.6461 48 1 9.6218 -1.7366 -5.6016 49 1 1.1151 4.0248 0.5842 50 1 -0.2397 3.0276 1.1924 51 1 1.8246 4.6054 2.7570 52 1 0.1055 4.2756 3.1564 53 1 2.2131 2.8402 4.2757 54 1 0.5891 2.1339 4.0125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714828365.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:01 Heat of formation + Delta-G solvation = -83.403351 kcal Electronic energy + Delta-G solvation = -30779.140436 eV Core-core repulsion = 26750.280199 eV Total energy + Delta-G solvation = -4028.860237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.87748 -40.23282 -38.51829 -37.41920 -36.37783 -35.89598 -34.28520 -33.12268 -31.91092 -30.62445 -28.52997 -28.34918 -27.73339 -26.79675 -24.78249 -23.30245 -22.72936 -22.41444 -21.96270 -21.30412 -20.01391 -18.33854 -18.23522 -17.88119 -17.45534 -17.02224 -16.57696 -16.51967 -16.06710 -15.70086 -15.67915 -15.37067 -14.99243 -14.85370 -14.56743 -14.54501 -14.39269 -14.06042 -13.88442 -13.63071 -13.35901 -13.30554 -13.25606 -13.14122 -12.97944 -12.83698 -12.68647 -12.51332 -12.42790 -12.37928 -12.18113 -12.14220 -11.97497 -11.91578 -11.83139 -11.71506 -11.34483 -11.25686 -11.01260 -10.66102 -10.45878 -10.14485 -9.68055 -8.49208 -7.75814 -5.37608 1.46722 1.49004 1.52241 1.55077 1.57261 1.94608 2.31482 2.54267 3.30008 3.41935 3.60040 3.63584 3.70634 3.82423 3.94927 4.08163 4.13953 4.19453 4.28866 4.35137 4.35604 4.48567 4.49571 4.62289 4.67019 4.68541 4.70757 4.78978 4.79559 4.88150 4.94745 4.97403 5.04101 5.07661 5.08126 5.14050 5.14962 5.20084 5.22168 5.23592 5.34566 5.40759 5.46577 5.56436 5.62212 5.68026 5.74888 5.88528 6.18358 6.50795 6.53487 7.16806 7.23587 7.28405 7.94252 8.47346 9.19734 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.002496 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.083489 B =11216.546015 C =11930.584612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.146 3.854 4 H 0.151 0.849 5 C 0.490 3.510 6 O -0.576 6.576 7 N -0.712 5.712 8 C 0.137 3.863 9 C -0.118 4.118 10 C 0.150 3.850 11 N -0.593 5.593 12 C -0.245 4.245 13 H 0.058 0.942 14 C -0.039 4.039 15 N -0.920 5.920 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.300 1.300 19 H -0.277 1.277 20 C 0.151 3.849 21 C -0.141 4.141 22 C -0.137 4.137 23 N -0.607 5.607 24 C 0.097 3.903 25 C -0.121 4.121 26 C -0.151 4.151 27 C 0.506 3.494 28 O -0.578 6.578 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.415 0.585 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.247 0.753 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.022 0.978 47 H 0.065 0.935 48 H 0.038 0.962 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.073 0.927 52 H 0.127 0.873 53 H 0.092 0.908 54 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.773 0.435 8.627 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.039 3.961 4 H 0.169 0.831 5 C 0.276 3.724 6 O -0.454 6.454 7 N -0.365 5.365 8 C 0.012 3.988 9 C -0.158 4.158 10 C 0.023 3.977 11 N -0.314 5.314 12 C -0.376 4.376 13 H 0.075 0.925 14 C -0.236 4.236 15 N -0.564 5.564 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.226 1.226 19 H -0.203 1.203 20 C 0.045 3.955 21 C -0.200 4.200 22 C -0.196 4.196 23 N -0.340 5.340 24 C -0.024 4.024 25 C -0.158 4.158 26 C -0.191 4.191 27 C 0.295 3.705 28 O -0.457 6.457 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.252 0.748 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.057 0.943 49 H 0.104 0.896 50 H 0.124 0.876 51 H 0.092 0.908 52 H 0.145 0.855 53 H 0.111 0.889 54 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.807 0.401 9.316 25.567 hybrid contribution 0.765 0.644 -0.836 1.304 sum -23.042 1.045 8.480 24.575 Atomic orbital electron populations 1.21662 0.92204 1.02715 1.02831 1.21869 0.98973 0.93009 1.03207 1.21041 0.88949 0.97161 0.88996 0.83150 1.21717 0.92281 0.77269 0.81116 1.90691 1.66623 1.46884 1.41252 1.45925 1.07620 1.59870 1.23130 1.21058 0.79957 0.99714 0.98043 1.22105 0.99391 0.99863 0.94486 1.20688 0.91029 0.99536 0.86427 1.44080 1.78205 1.02790 1.06301 1.19024 1.33732 0.96677 0.88126 0.92479 1.25796 0.96901 1.01685 0.99237 1.70124 1.33843 1.18974 1.33491 0.85620 0.77969 0.78534 0.80020 1.20265 1.22617 1.20308 1.20673 0.93325 0.84445 0.97078 1.22038 0.98823 0.99392 0.99761 1.21949 0.97736 0.99555 1.00329 1.48140 1.51030 1.30314 1.04496 1.22469 0.95465 0.85274 0.99199 1.22632 1.04410 0.95651 0.93150 1.22356 1.03410 0.96347 0.96967 1.21642 0.78242 0.84753 0.85815 1.90670 1.39638 1.30786 1.84654 0.92850 0.91866 0.90148 0.93399 0.89003 0.74841 0.93964 0.93582 0.91454 0.92347 0.92038 0.96217 0.94360 0.92868 0.94245 0.91598 0.93326 0.95874 0.91602 0.94318 0.89600 0.87636 0.90827 0.85517 0.88940 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.80 71.98 0.71 -0.91 16 2 C -0.13 -2.42 5.30 30.60 0.16 -2.26 16 3 C 0.15 2.97 2.67 44.25 0.12 3.09 16 4 H 0.15 1.88 8.07 -2.39 -0.02 1.86 16 5 C 0.49 15.25 6.86 87.66 0.60 15.85 16 6 O -0.58 -24.07 14.92 10.49 0.16 -23.91 16 7 N -0.71 -20.40 5.42 -463.05 -2.51 -22.90 16 8 C 0.14 4.93 5.67 86.38 0.49 5.42 16 9 C -0.12 -4.37 5.65 30.60 0.17 -4.20 16 10 C 0.15 6.96 5.28 86.38 0.46 7.42 16 11 N -0.59 -28.25 2.37 -678.01 -1.61 -29.86 16 12 C -0.24 -12.81 8.04 84.03 0.68 -12.13 16 13 H 0.06 2.98 7.14 -2.91 -0.02 2.96 16 14 C -0.04 -2.15 4.96 84.86 0.42 -1.73 16 15 N -0.92 -53.78 11.43 21.65 0.25 -53.53 16 16 Si 0.95 44.04 29.60 68.60 2.03 46.07 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 C 0.15 6.07 3.37 44.99 0.15 6.22 16 21 C -0.14 -4.77 9.19 71.98 0.66 -4.11 16 22 C -0.14 -5.48 9.11 71.98 0.66 -4.83 16 23 N -0.61 -12.30 2.07 -798.19 -1.66 -13.95 16 24 C 0.10 0.99 7.30 86.83 0.63 1.62 16 25 C -0.12 -1.10 7.18 31.65 0.23 -0.87 16 26 C -0.15 -2.38 6.86 30.59 0.21 -2.17 16 27 C 0.51 13.52 6.68 87.90 0.59 14.11 16 28 O -0.58 -21.96 15.36 10.49 0.16 -21.80 16 29 H 0.05 0.65 7.75 -2.39 -0.02 0.63 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 1.28 6.60 -2.39 -0.02 1.26 16 33 H 0.09 1.41 7.43 -2.39 -0.02 1.39 16 34 H 0.41 8.83 7.83 -92.71 -0.73 8.11 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 3.34 5.48 -2.39 -0.01 3.33 16 40 H 0.02 0.90 7.88 -2.39 -0.02 0.88 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.05 2.04 7.77 -2.39 -0.02 2.03 16 43 H 0.04 1.42 7.32 -2.39 -0.02 1.40 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.04 1.67 7.50 -2.39 -0.02 1.65 16 49 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 53 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 54 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -80.51 425.77 3.89 -76.62 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.14 Total: 22.75 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 6.93 Total: 20.52 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.52 Total: -120.25 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: 0.32 Total: -45.71 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -80.51 3.89 -76.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714828365.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.785 kcal (2) G-P(sol) polarization free energy of solvation -80.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds