Wall clock time and date at job start Tue Mar 31 2020 23:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 H 1.08999 * 109.47382 * 55.00045 * 3 2 1 5 5 C 1.53003 * 109.47257 * 294.99747 * 3 2 1 6 6 C 1.53005 * 109.47218 * 174.99619 * 3 2 1 7 7 C 1.50696 * 109.47166 * 184.99743 * 6 3 2 8 8 O 1.21279 * 120.00455 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99738 * 179.97438 * 7 6 3 10 10 C 1.46506 * 120.00032 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46722 * 325.00577 * 10 9 7 12 12 C 1.53000 * 109.46646 * 85.00438 * 10 9 7 13 13 C 1.53006 * 109.46657 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47051 * 299.99701 * 13 12 10 15 15 H 1.08999 * 109.47559 * 299.99918 * 14 13 12 16 16 N 1.46906 * 109.46889 * 180.02562 * 14 13 12 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 14 13 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00252 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00305 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47102 * 89.99542 * 25 23 21 27 27 H 1.48493 * 109.47421 * 209.99846 * 25 23 21 28 28 H 1.48497 * 109.46772 * 330.00472 * 25 23 21 29 29 C 1.53000 * 109.47146 * 60.00598 * 14 13 12 30 30 C 1.52995 * 109.47213 * 205.00232 * 10 9 7 31 31 H 1.08998 * 109.46993 * 299.99962 * 1 2 3 32 32 H 1.08997 * 109.47140 * 60.00113 * 1 2 3 33 33 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46993 * 240.00038 * 2 1 3 35 35 H 1.09006 * 109.47094 * 119.99707 * 2 1 3 36 36 H 1.08999 * 109.47168 * 300.00430 * 5 3 2 37 37 H 1.09002 * 109.46475 * 60.00132 * 5 3 2 38 38 H 1.08997 * 109.47038 * 180.02562 * 5 3 2 39 39 H 1.09001 * 109.46553 * 64.99971 * 6 3 2 40 40 H 1.08998 * 109.46996 * 305.00322 * 6 3 2 41 41 H 0.97006 * 120.00317 * 0.02562 * 9 7 6 42 42 H 1.09002 * 109.47150 * 299.99454 * 12 10 9 43 43 H 1.08999 * 109.47446 * 60.00583 * 12 10 9 44 44 H 1.09003 * 109.46645 * 179.97438 * 13 12 10 45 45 H 1.09002 * 109.47370 * 60.00042 * 13 12 10 46 46 H 1.00902 * 110.99923 * 208.96103 * 16 14 13 47 47 H 1.08995 * 109.47296 * 299.99911 * 17 16 14 48 48 H 1.08997 * 109.47334 * 60.00212 * 17 16 14 49 49 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 50 50 H 0.97002 * 120.00635 * 180.02562 * 24 23 21 51 51 H 1.08999 * 109.47446 * 59.99252 * 29 14 13 52 52 H 1.08994 * 109.47563 * 179.97438 * 29 14 13 53 53 H 1.09003 * 109.47335 * 60.00413 * 30 10 9 54 54 H 1.08991 * 109.47756 * 300.00120 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2493 8 8 3.2660 3.7827 0.2382 9 7 5.3760 3.1108 0.3730 10 6 5.8544 4.4902 0.4936 11 1 5.2289 5.1459 -0.1121 12 6 5.7843 4.9281 1.9579 13 6 6.2834 6.3690 2.0838 14 6 7.7310 6.4518 1.5955 15 1 8.3568 5.7963 2.2011 16 7 8.2103 7.8351 1.7169 17 6 8.7179 8.0995 3.0698 18 6 9.1990 9.5251 3.1560 19 8 9.1266 10.2493 2.1858 20 7 9.7097 9.9951 4.3113 21 6 10.1479 11.2919 4.3897 22 1 10.0834 11.9367 3.5257 23 6 10.6739 11.7767 5.5808 24 7 11.0934 13.0197 5.6561 25 14 10.7848 10.6615 7.0753 26 1 12.0928 9.9585 7.0724 27 1 10.6633 11.4761 8.3109 28 1 9.6864 9.6632 7.0305 29 6 7.8011 6.0139 0.1311 30 6 7.3021 4.5725 0.0055 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.0699 1.5875 -2.1492 37 1 0.5489 2.1252 -1.3969 38 1 1.9990 3.1541 -1.3075 39 1 4.0029 0.9836 -0.7596 40 1 3.8570 0.8801 1.0114 41 1 6.0087 2.3755 0.3822 42 1 4.7529 4.8695 2.3057 43 1 6.4098 4.2724 2.5636 44 1 6.2330 6.6810 3.1269 45 1 5.6576 7.0245 1.4781 46 1 8.9128 8.0367 1.0212 47 1 7.9195 7.9414 3.7948 48 1 9.5446 7.4229 3.2864 49 1 9.7680 9.4159 5.0871 50 1 11.4610 13.3581 6.4876 51 1 7.1752 6.6694 -0.4745 52 1 8.8322 6.0733 -0.2169 53 1 7.3521 4.2605 -1.0378 54 1 7.9276 3.9168 0.6110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715185147.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:24 Heat of formation + Delta-G solvation = -130.596221 kcal Electronic energy + Delta-G solvation = -29219.529986 eV Core-core repulsion = 25188.623312 eV Total energy + Delta-G solvation = -4030.906674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.18572 -40.38909 -39.45973 -37.34728 -36.40699 -35.87910 -34.09820 -33.72129 -31.81167 -31.65021 -30.08170 -28.53874 -27.44991 -25.54971 -24.80258 -23.76668 -22.46228 -21.45325 -21.30924 -20.93793 -20.56780 -20.18096 -18.03723 -17.78091 -17.27391 -16.99312 -16.61669 -16.45384 -16.03792 -15.88249 -15.68042 -15.33302 -15.18304 -15.00312 -14.89254 -14.76800 -14.36446 -14.22803 -14.06049 -13.77669 -13.43120 -13.38071 -13.14771 -13.07474 -12.92900 -12.79163 -12.70214 -12.42698 -12.33638 -12.25146 -12.16067 -12.04833 -11.97890 -11.73250 -11.52517 -11.51984 -11.40140 -11.37495 -11.19536 -10.61066 -10.43031 -10.25581 -9.95262 -9.29852 -8.41792 -6.02998 1.30043 1.35023 1.44395 1.75083 1.95021 2.22693 2.25830 2.72882 3.14683 3.37949 3.69243 3.73915 3.83046 3.88361 4.01916 4.12589 4.19594 4.23072 4.26906 4.31075 4.42465 4.44150 4.47395 4.48724 4.55154 4.57051 4.64655 4.70103 4.74836 4.76995 4.85055 4.88800 4.94108 5.05354 5.10359 5.15472 5.19996 5.21032 5.24957 5.25630 5.31192 5.34442 5.42282 5.52113 5.53619 5.58941 5.66174 5.91733 6.12335 6.44676 6.59558 6.67974 6.87398 7.39079 7.40352 7.95867 8.75938 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025452 B = 0.001598 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.855090 B =17520.880580 C =17973.598338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.077 4.077 4 H 0.053 0.947 5 C -0.152 4.152 6 C -0.131 4.131 7 C 0.504 3.496 8 O -0.582 6.582 9 N -0.716 5.716 10 C 0.147 3.853 11 H 0.058 0.942 12 C -0.115 4.115 13 C -0.104 4.104 14 C 0.091 3.909 15 H 0.064 0.936 16 N -0.688 5.688 17 C 0.064 3.936 18 C 0.448 3.552 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.331 4.331 22 H 0.054 0.946 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.232 1.232 29 C -0.116 4.116 30 C -0.108 4.108 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.416 0.584 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.346 0.654 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.058 0.942 52 H 0.078 0.922 53 H 0.083 0.917 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.843 -36.701 -8.581 39.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.096 4.096 4 H 0.072 0.928 5 C -0.209 4.209 6 C -0.170 4.170 7 C 0.293 3.707 8 O -0.462 6.462 9 N -0.368 5.368 10 C 0.042 3.958 11 H 0.076 0.924 12 C -0.154 4.154 13 C -0.143 4.143 14 C -0.018 4.018 15 H 0.082 0.918 16 N -0.321 5.321 17 C -0.069 4.069 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.072 0.928 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.156 1.156 29 C -0.154 4.154 30 C -0.146 4.146 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.253 0.747 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.166 0.834 47 H 0.125 0.875 48 H 0.098 0.902 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.076 0.924 52 H 0.097 0.903 53 H 0.101 0.899 54 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.976 -35.141 -9.012 38.877 hybrid contribution 1.108 0.136 0.871 1.416 sum -12.869 -35.005 -8.140 38.174 Atomic orbital electron populations 1.21834 0.96176 1.01874 1.01555 1.21554 0.95837 0.94782 1.02950 1.20895 0.93705 0.96726 0.98262 0.92839 1.21946 1.01175 1.00695 0.97070 1.21810 0.96863 0.92000 1.06332 1.21378 0.82183 0.92582 0.74594 1.90692 1.55818 1.48329 1.51346 1.46021 1.07586 1.08971 1.74212 1.20866 0.95784 0.83165 0.96007 0.92408 1.21785 1.00796 0.96112 0.96740 1.21462 0.95705 0.96077 1.01055 1.21632 0.95719 0.87125 0.97288 0.91792 1.60038 1.43836 1.24700 1.03489 1.21659 1.00447 0.91133 0.93621 1.21030 0.81408 0.91147 0.82862 1.90542 1.60057 1.61101 1.38235 1.42035 1.57378 1.11487 1.12349 1.19023 1.39538 0.88172 0.99310 0.92770 1.26118 0.95655 0.97938 1.01559 1.69805 1.41803 1.16845 1.29042 0.85357 0.80563 0.78743 0.76809 1.17889 1.20038 1.15574 1.21631 1.02232 0.96560 0.94985 1.21673 0.93595 0.96549 1.02822 0.93502 0.92899 0.91911 0.90792 0.90889 0.92162 0.92906 0.93662 0.86552 0.86533 0.74651 0.93436 0.89941 0.92250 0.93433 0.83392 0.87539 0.90195 0.77461 0.91126 0.92355 0.90304 0.89877 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.67 71.98 0.70 -0.76 16 2 C -0.11 -0.89 5.40 30.59 0.17 -0.72 16 3 C -0.08 -0.94 2.04 -10.79 -0.02 -0.96 16 4 H 0.05 0.92 7.95 -2.39 -0.02 0.90 16 5 C -0.15 -2.29 8.69 71.98 0.63 -1.66 16 6 C -0.13 -1.08 5.17 29.85 0.15 -0.93 16 7 C 0.50 8.06 7.51 87.66 0.66 8.72 16 8 O -0.58 -15.29 13.63 -3.03 -0.04 -15.33 16 9 N -0.72 -8.07 5.08 -442.54 -2.25 -10.32 16 10 C 0.15 2.30 2.45 44.99 0.11 2.41 16 11 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 12 C -0.12 -2.03 5.49 30.60 0.17 -1.86 16 13 C -0.10 -2.29 5.42 30.59 0.17 -2.13 16 14 C 0.09 1.87 2.49 44.91 0.11 1.99 16 15 H 0.06 1.08 7.80 -2.39 -0.02 1.06 16 16 N -0.69 -20.35 5.93 -495.58 -2.94 -23.29 16 17 C 0.06 1.97 5.97 85.56 0.51 2.48 16 18 C 0.45 20.55 7.82 87.66 0.69 21.23 16 19 O -0.61 -34.80 15.78 -3.05 -0.05 -34.85 16 20 N -0.59 -28.23 5.09 -306.99 -1.56 -29.79 16 21 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 22 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 24 N -0.93 -56.80 13.96 21.66 0.30 -56.50 16 25 Si 0.97 38.92 27.74 68.60 1.90 40.82 16 26 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 27 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 29 C -0.12 -1.94 5.20 30.61 0.16 -1.78 16 30 C -0.11 -1.21 5.39 30.61 0.17 -1.04 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.54 6.56 -2.39 -0.02 0.52 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.78 6.56 -2.39 -0.02 0.77 16 38 H 0.04 0.97 5.95 -2.39 -0.01 0.95 16 39 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.42 1.63 8.60 -92.70 -0.80 0.83 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 45 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.35 10.76 8.05 -89.69 -0.72 10.03 16 47 H 0.11 2.91 7.44 -2.39 -0.02 2.89 16 48 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 49 H 0.39 15.34 5.76 -92.71 -0.53 14.81 16 50 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 51 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 53 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -83.52 419.75 -0.17 -83.69 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -1.21 Total: 39.74 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.68 Total: 5.82 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -6.45 Total: -119.89 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.09 Total: -50.18 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.82 kcal Total: -83.52 -0.17 -83.69 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715185147.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.905 kcal (2) G-P(sol) polarization free energy of solvation -83.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds