Wall clock time and date at job start Tue Mar 31 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46914 * 2 1 4 4 H 1.08998 * 109.47183 * 177.53953 * 3 2 1 5 5 C 1.53008 * 109.46746 * 297.53427 * 3 2 1 6 6 C 1.50696 * 109.47129 * 293.86051 * 5 3 2 7 7 O 1.21280 * 120.00202 * 354.32322 * 6 5 3 8 8 N 1.34781 * 119.99833 * 174.31470 * 6 5 3 9 9 C 1.46502 * 119.99655 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46581 * 179.97438 * 9 8 6 11 11 H 1.09002 * 112.95895 * 72.85848 * 10 9 8 12 12 C 1.53939 * 113.76003 * 204.50123 * 10 9 8 13 13 C 1.53929 * 86.34103 * 138.04181 * 12 10 9 14 14 N 1.47952 * 113.76307 * 301.06621 * 10 9 8 15 15 C 1.46893 * 111.00479 * 108.09972 * 14 10 9 16 16 C 1.50702 * 109.47414 * 169.99839 * 15 14 10 17 17 O 1.21293 * 119.99932 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00368 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00388 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99692 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00251 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00013 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46935 * 90.00291 * 23 21 19 25 25 H 1.48496 * 109.47152 * 210.00180 * 23 21 19 26 26 H 1.48493 * 109.47298 * 330.00259 * 23 21 19 27 27 C 1.52999 * 109.47448 * 57.53142 * 3 2 1 28 28 C 1.52992 * 109.47203 * 179.97438 * 27 3 2 29 29 C 1.53004 * 109.46587 * 60.00326 * 27 3 2 30 30 H 1.08997 * 109.46887 * 302.35182 * 1 2 3 31 31 H 1.08998 * 109.47067 * 62.34982 * 1 2 3 32 32 H 1.09001 * 109.46500 * 182.35010 * 1 2 3 33 33 H 1.08996 * 109.47399 * 239.99899 * 2 1 3 34 34 H 1.08997 * 109.47358 * 119.99319 * 2 1 3 35 35 H 1.08997 * 109.47034 * 53.86686 * 5 3 2 36 36 H 1.09004 * 109.46828 * 173.86435 * 5 3 2 37 37 H 0.97001 * 119.99597 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.47043 * 299.99463 * 9 8 6 39 39 H 1.08995 * 109.47430 * 60.00459 * 9 8 6 40 40 H 1.08999 * 113.73285 * 252.40656 * 12 10 9 41 41 H 1.09005 * 113.72589 * 23.68029 * 12 10 9 42 42 H 1.08995 * 113.76190 * 90.59631 * 13 12 10 43 43 H 1.08999 * 113.75812 * 221.85536 * 13 12 10 44 44 H 1.08998 * 109.47349 * 290.00370 * 15 14 10 45 45 H 1.09002 * 109.47094 * 50.00239 * 15 14 10 46 46 H 0.97007 * 119.99401 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99642 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.47070 * 300.00535 * 27 3 2 49 49 H 1.08997 * 109.47637 * 300.00302 * 28 27 3 50 50 H 1.09000 * 109.47038 * 179.97438 * 28 27 3 51 51 H 1.09004 * 109.47005 * 60.00686 * 28 27 3 52 52 H 1.08999 * 109.47096 * 180.02562 * 29 27 3 53 53 H 1.09002 * 109.47115 * 299.99336 * 29 27 3 54 54 H 1.08997 * 109.47687 * 60.00015 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1291 1.4429 0.0441 5 6 1.5812 2.1456 -1.2792 6 6 2.2528 1.5110 -2.4697 7 8 3.0989 0.6579 -2.3052 8 7 1.9130 1.8915 -3.7172 9 6 2.5655 1.2742 -4.8745 10 6 2.0013 1.8800 -6.1612 11 1 2.3449 2.8993 -6.3376 12 6 2.1319 0.9605 -7.3889 13 6 0.7026 1.4037 -7.7497 14 7 0.5395 1.7070 -6.3106 15 6 -0.1640 2.9819 -6.1178 16 6 -1.6090 2.8235 -6.5152 17 8 -2.0132 1.7535 -6.9189 18 7 -2.4526 3.8704 -6.4210 19 6 -3.7672 3.7262 -6.7821 20 1 -4.1270 2.7734 -7.1415 21 6 -4.6367 4.8057 -6.6855 22 7 -5.8970 4.6672 -7.0311 23 14 -4.0145 6.4534 -6.0631 24 1 -3.5302 7.2645 -7.2089 25 1 -5.1185 7.1730 -5.3787 26 1 -2.9000 6.2325 -5.1069 27 6 1.4799 2.1816 1.2170 28 6 1.9904 3.6238 1.2173 29 6 1.9387 1.4785 2.4961 30 1 -0.3633 0.5499 0.8681 31 1 -0.3633 0.4769 -0.9103 32 1 -0.3632 -1.0268 0.0421 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.4999 2.0503 -1.3783 36 1 1.8500 3.2009 -1.2302 37 1 1.2364 2.5741 -3.8487 38 1 3.6390 1.4570 -4.8267 39 1 2.3790 0.2003 -4.8668 40 1 2.8865 1.2880 -8.1040 41 1 2.2132 -0.0972 -7.1381 42 1 0.6645 2.2842 -8.3910 43 1 0.0673 0.5919 -8.1039 44 1 -0.1054 3.2743 -5.0694 45 1 0.3005 3.7504 -6.7357 46 1 -2.1294 4.7261 -6.0978 47 1 -6.5040 5.4208 -6.9633 48 1 0.3908 2.1811 1.1728 49 1 3.0795 3.6238 1.2617 50 1 1.5910 4.1504 2.0840 51 1 1.6639 4.1250 0.3060 52 1 1.5394 2.0046 3.3632 53 1 1.5753 0.4508 2.4962 54 1 3.0278 1.4788 2.5404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716668179.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:59 Heat of formation + Delta-G solvation = -81.983711 kcal Electronic energy + Delta-G solvation = -30597.894473 eV Core-core repulsion = 26569.095796 eV Total energy + Delta-G solvation = -4028.798677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.55434 -40.82003 -39.64863 -38.53174 -36.01162 -35.47683 -33.77625 -33.32103 -32.16631 -31.29658 -29.17499 -27.77341 -27.59129 -25.97771 -25.11983 -24.07565 -23.11775 -21.50157 -21.27008 -20.55181 -20.25651 -19.64911 -18.09491 -17.79314 -17.29248 -17.07654 -16.72711 -16.57311 -16.34395 -15.99296 -15.68807 -15.40140 -15.22665 -14.95584 -14.86512 -14.66565 -14.38245 -14.13379 -13.86132 -13.79528 -13.65080 -13.22660 -13.18232 -13.00781 -12.93752 -12.80785 -12.67317 -12.46229 -12.42042 -12.29748 -12.18572 -11.98638 -11.85742 -11.73828 -11.67333 -11.49547 -11.38480 -11.15073 -11.10856 -10.64867 -10.41569 -10.24790 -9.98570 -9.67594 -8.40946 -6.02180 1.29978 1.36074 1.45321 1.73131 1.95328 2.22941 2.23762 2.65554 3.12408 3.15653 3.58205 3.73787 3.76986 3.82187 3.92533 4.02097 4.12746 4.18388 4.23704 4.27841 4.35211 4.42032 4.43313 4.44743 4.51712 4.61006 4.64571 4.68002 4.69802 4.83391 4.85842 4.87263 4.92953 4.99760 5.02288 5.08765 5.11942 5.17411 5.22704 5.24348 5.33136 5.36013 5.37376 5.46463 5.53657 5.56152 5.61136 5.67956 5.92381 6.05971 6.59452 6.59802 6.88762 7.32375 7.39724 7.97482 8.76899 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.003041 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.442186 B = 9206.677437 C =11308.727928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.059 4.059 4 H 0.064 0.936 5 C -0.143 4.143 6 C 0.510 3.490 7 O -0.579 6.579 8 N -0.720 5.720 9 C 0.145 3.855 10 C 0.023 3.977 11 H 0.114 0.886 12 C -0.119 4.119 13 C 0.009 3.991 14 N -0.476 5.476 15 C 0.018 3.982 16 C 0.451 3.549 17 O -0.610 6.610 18 N -0.590 5.590 19 C -0.327 4.327 20 H 0.052 0.948 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.226 1.226 27 C -0.092 4.092 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.406 0.594 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.060 0.940 53 H 0.055 0.945 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.250 2.549 13.990 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.078 4.078 4 H 0.082 0.918 5 C -0.182 4.182 6 C 0.298 3.702 7 O -0.459 6.459 8 N -0.372 5.372 9 C 0.021 3.979 10 C -0.086 4.086 11 H 0.131 0.869 12 C -0.157 4.157 13 C -0.120 4.120 14 N -0.200 5.200 15 C -0.113 4.113 16 C 0.239 3.761 17 O -0.494 6.494 18 N -0.232 5.232 19 C -0.456 4.456 20 H 0.070 0.930 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.149 1.149 27 C -0.111 4.111 28 C -0.208 4.208 29 C -0.205 4.205 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.242 0.758 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.133 0.867 45 H 0.110 0.890 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.079 0.921 53 H 0.074 0.926 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.011 0.856 14.228 26.223 hybrid contribution -0.767 1.395 -0.685 1.733 sum 21.244 2.251 13.543 25.294 Atomic orbital electron populations 1.21901 0.95822 1.01531 1.01981 1.21578 0.95831 0.96826 1.01634 1.20876 0.99976 0.94196 0.92711 0.91759 1.21972 1.02169 1.02239 0.91839 1.21163 0.82074 0.81911 0.85076 1.90649 1.34944 1.33827 1.86482 1.45992 1.42872 1.42826 1.05490 1.21214 0.96767 0.97002 0.82908 1.23880 0.88580 1.01036 0.95113 0.86886 1.23297 0.95868 1.00409 0.96143 1.23686 0.97249 1.01051 0.89986 1.68439 1.07596 1.26438 1.17543 1.22512 0.90689 0.94156 1.03975 1.20841 0.88955 0.83905 0.82443 1.90564 1.79128 1.28644 1.51043 1.42021 1.08558 1.12166 1.60494 1.18964 0.85135 0.98858 1.42684 0.92998 1.26143 0.94931 1.03305 0.97084 1.69813 1.05425 1.34003 1.48466 0.85368 0.79632 0.76733 0.79801 1.18195 1.20214 1.14929 1.21191 1.00757 0.95199 0.93915 1.21933 1.01148 0.95424 1.02321 1.21868 1.01187 1.00550 0.96887 0.91061 0.93500 0.93378 0.93485 0.91540 0.88113 0.86387 0.75824 0.90020 0.93071 0.87761 0.89276 0.90901 0.92127 0.86662 0.88980 0.77453 0.91181 0.90482 0.92837 0.92113 0.91839 0.92056 0.92617 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.22 71.98 0.66 -2.31 16 2 C -0.12 -2.47 5.07 30.60 0.16 -2.32 16 3 C -0.06 -1.03 1.39 -10.79 -0.01 -1.05 16 4 H 0.06 1.32 7.83 -2.39 -0.02 1.30 16 5 C -0.14 -2.40 4.83 29.85 0.14 -2.26 16 6 C 0.51 11.57 7.42 87.66 0.65 12.22 16 7 O -0.58 -17.24 14.27 -3.03 -0.04 -17.28 16 8 N -0.72 -14.38 5.50 -463.06 -2.55 -16.93 16 9 C 0.15 2.90 5.81 86.38 0.50 3.40 16 10 C 0.02 0.42 3.40 45.02 0.15 0.57 16 11 H 0.11 1.45 7.80 -2.39 -0.02 1.43 16 12 C -0.12 -2.16 7.84 31.24 0.25 -1.92 16 13 C 0.01 0.25 6.75 86.40 0.58 0.83 16 14 N -0.48 -13.05 5.63 -888.36 -5.00 -18.05 16 15 C 0.02 0.50 5.11 85.56 0.44 0.94 16 16 C 0.45 19.47 7.59 87.66 0.67 20.13 16 17 O -0.61 -33.22 15.13 -3.07 -0.05 -33.27 16 18 N -0.59 -26.64 5.09 -306.99 -1.56 -28.21 16 19 C -0.33 -18.79 10.16 84.04 0.85 -17.93 16 20 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 22 N -0.94 -55.90 13.96 21.66 0.30 -55.60 16 23 Si 0.96 37.26 27.74 68.60 1.90 39.16 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 25 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 26 H -0.23 -7.09 6.52 99.48 0.65 -6.44 16 27 C -0.09 -1.26 2.09 -10.80 -0.02 -1.29 16 28 C -0.15 -1.76 8.85 71.98 0.64 -1.12 16 29 C -0.15 -1.93 8.84 71.98 0.64 -1.30 16 30 H 0.07 1.14 6.25 -2.39 -0.01 1.13 16 31 H 0.05 0.97 6.48 -2.39 -0.02 0.95 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.24 6.22 -2.39 -0.01 1.22 16 34 H 0.07 1.26 6.56 -2.39 -0.02 1.24 16 35 H 0.10 1.64 6.25 -2.39 -0.01 1.62 16 36 H 0.12 1.44 6.12 -2.38 -0.01 1.42 16 37 H 0.41 6.91 6.59 -92.71 -0.61 6.30 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.27 7.91 -2.39 -0.02 1.25 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.72 7.94 -2.38 -0.02 1.70 16 42 H 0.07 1.85 7.78 -2.39 -0.02 1.83 16 43 H 0.06 2.05 8.09 -2.39 -0.02 2.03 16 44 H 0.12 2.46 6.55 -2.39 -0.02 2.44 16 45 H 0.09 1.93 7.69 -2.39 -0.02 1.92 16 46 H 0.39 14.21 5.76 -92.70 -0.53 13.68 16 47 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.08 1.05 6.33 -2.39 -0.02 1.04 16 49 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.06 0.66 6.30 -2.38 -0.02 0.64 16 52 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.05 0.76 6.49 -2.39 -0.02 0.74 16 54 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -80.50 411.56 -0.53 -81.04 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -0.29 Total: 42.96 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.76 Total: 6.18 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -8.81 Total: -118.79 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.09 Total: -50.55 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 1.90 Total: 39.16 kcal Total: -80.50 -0.53 -81.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716668179.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.946 kcal (2) G-P(sol) polarization free energy of solvation -80.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds