Wall clock time and date at job start Tue Mar 31 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47050 * 2 1 4 4 H 1.08997 * 109.47209 * 304.99698 * 3 2 1 5 5 C 1.52995 * 109.47189 * 65.00264 * 3 2 1 6 6 C 1.53007 * 109.47044 * 185.00194 * 3 2 1 7 7 C 1.50692 * 109.47121 * 175.00122 * 6 3 2 8 8 O 1.21290 * 120.00129 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00089 * 179.97438 * 7 6 3 10 10 C 1.46501 * 120.00103 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.78376 * 31.75516 * 10 9 7 12 12 C 1.54934 * 110.72643 * 268.50339 * 10 9 7 13 13 N 1.48526 * 103.22841 * 204.22807 * 12 10 9 14 14 C 1.46904 * 111.00300 * 159.71741 * 13 12 10 15 15 C 1.50706 * 109.46676 * 52.60368 * 14 13 12 16 16 O 1.21288 * 120.00284 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99730 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00155 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00503 * 22 20 18 26 26 C 1.47900 * 105.82003 * 39.20633 * 13 12 10 27 27 C 1.53988 * 107.05861 * 334.67110 * 26 13 12 28 28 C 1.53000 * 110.31321 * 120.14467 * 27 26 13 29 29 C 1.53007 * 110.31016 * 242.30917 * 27 26 13 30 30 H 1.08999 * 109.47654 * 60.00051 * 1 2 3 31 31 H 1.09007 * 109.47525 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47111 * 299.99646 * 1 2 3 33 33 H 1.09006 * 109.46532 * 240.00171 * 2 1 3 34 34 H 1.08994 * 109.47325 * 120.00592 * 2 1 3 35 35 H 1.09009 * 109.47129 * 59.99571 * 5 3 2 36 36 H 1.08994 * 109.47385 * 179.97438 * 5 3 2 37 37 H 1.08999 * 109.46986 * 300.00130 * 5 3 2 38 38 H 1.09001 * 109.46635 * 55.00053 * 6 3 2 39 39 H 1.09001 * 109.46995 * 295.00546 * 6 3 2 40 40 H 0.96998 * 119.99771 * 0.02562 * 9 7 6 41 41 H 1.08998 * 110.67108 * 85.79377 * 12 10 9 42 42 H 1.09007 * 110.66654 * 322.66143 * 12 10 9 43 43 H 1.08996 * 109.47230 * 292.60916 * 14 13 12 44 44 H 1.09002 * 109.47146 * 172.60148 * 14 13 12 45 45 H 0.96996 * 119.99887 * 0.02562 * 17 15 14 46 46 H 0.97001 * 119.99781 * 359.97438 * 21 20 18 47 47 H 1.09005 * 109.91663 * 94.02583 * 26 13 12 48 48 H 1.09004 * 109.91675 * 215.31755 * 26 13 12 49 49 H 1.08994 * 109.46859 * 61.44780 * 28 27 26 50 50 H 1.08994 * 109.47196 * 181.45316 * 28 27 26 51 51 H 1.09002 * 109.46742 * 301.45316 * 28 27 26 52 52 H 1.09002 * 109.46825 * 58.54089 * 29 27 26 53 53 H 1.08991 * 109.47584 * 178.54471 * 29 27 26 54 54 H 1.09002 * 109.47054 * 298.54602 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0569 2.8633 -0.2493 8 8 3.2659 3.7826 -0.2383 9 7 5.3761 3.1108 -0.3719 10 6 5.8545 4.4902 -0.4925 11 1 5.2085 5.1732 0.0591 12 6 5.9511 4.9088 -1.9811 13 7 6.9613 5.9975 -1.9631 14 6 7.5417 6.1993 -3.2974 15 6 6.4353 6.3892 -4.3029 16 8 5.2773 6.3597 -3.9433 17 7 6.7326 6.5927 -5.6016 18 6 5.7261 6.7649 -6.5164 19 1 4.6950 6.7378 -6.1963 20 6 6.0326 6.9742 -7.8554 21 7 7.2873 7.0066 -8.2450 22 14 4.6612 7.2095 -9.1017 23 1 5.2479 7.4142 -10.4505 24 1 3.7935 6.0045 -9.1164 25 1 3.8521 8.3977 -8.7290 26 6 7.9949 5.5724 -0.9944 27 6 7.3169 4.6066 -0.0051 28 6 8.0007 3.2385 -0.0453 29 6 7.3600 5.1814 1.4123 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.0699 1.5874 2.1492 36 1 1.9989 3.1540 1.3076 37 1 0.5489 2.1252 1.3969 38 1 3.8569 0.8800 -1.0114 39 1 4.0029 0.9835 0.7595 40 1 6.0086 2.3755 -0.3811 41 1 4.9912 5.2808 -2.3393 42 1 6.2948 4.0752 -2.5937 43 1 8.1356 5.3273 -3.5711 44 1 8.1786 7.0839 -3.2866 45 1 7.6587 6.6166 -5.8891 46 1 7.9994 6.8848 -7.5977 47 1 8.8049 5.0620 -1.5156 48 1 8.3822 6.4400 -0.4600 49 1 9.0437 3.3447 0.2526 50 1 7.4944 2.5589 0.6401 51 1 7.9510 2.8372 -1.0576 52 1 6.8590 6.1493 1.4272 53 1 6.8544 4.4999 2.0963 54 1 8.3976 5.3045 1.7230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717580342.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:30 Heat of formation + Delta-G solvation = -107.278748 kcal Electronic energy + Delta-G solvation = -30882.975599 eV Core-core repulsion = 26853.080047 eV Total energy + Delta-G solvation = -4029.895552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69961 -40.59918 -39.65910 -37.29069 -36.58292 -35.69094 -34.30168 -33.22033 -31.78696 -30.41951 -29.02035 -28.37476 -28.01612 -26.58321 -25.42101 -24.60082 -22.83542 -21.50149 -21.43302 -20.79253 -20.12905 -19.99316 -18.34109 -17.87274 -17.47596 -16.83331 -16.61082 -16.51095 -16.19037 -15.72509 -15.66238 -15.45547 -15.19288 -15.09454 -14.76193 -14.52351 -14.43484 -14.28434 -14.01493 -13.47998 -13.46618 -13.27866 -13.19992 -13.04957 -12.87232 -12.82480 -12.75059 -12.58778 -12.50975 -12.21732 -11.97081 -11.94466 -11.87743 -11.78697 -11.75632 -11.60873 -11.56091 -11.51053 -11.41528 -10.73922 -10.34481 -10.15776 -9.98328 -9.41067 -8.96657 -6.10268 1.48520 1.51137 1.65890 1.79532 1.95466 2.11336 2.36922 2.76434 3.12159 3.21711 3.41993 3.57469 3.75172 3.83812 3.84599 3.97891 4.02986 4.12382 4.22847 4.25743 4.28310 4.32311 4.39638 4.43712 4.58524 4.60603 4.66058 4.70870 4.72461 4.77831 4.81454 4.84415 4.90143 4.95436 5.01153 5.06935 5.12083 5.14583 5.17199 5.21950 5.28576 5.30676 5.38500 5.45127 5.52782 5.54854 5.59428 5.79248 5.93017 5.98950 6.53568 6.56056 6.71832 7.31254 7.39286 7.89511 8.51194 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.002975 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.277127 B = 9410.706120 C =11949.592118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.079 4.079 4 H 0.044 0.956 5 C -0.149 4.149 6 C -0.129 4.129 7 C 0.501 3.499 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.155 3.845 11 H 0.073 0.927 12 C 0.040 3.960 13 N -0.514 5.514 14 C 0.050 3.950 15 C 0.439 3.561 16 O -0.611 6.611 17 N -0.584 5.584 18 C -0.410 4.410 19 H 0.069 0.931 20 C -0.040 4.040 21 N -0.914 5.914 22 Si 1.132 2.868 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.040 3.960 27 C -0.072 4.072 28 C -0.144 4.144 29 C -0.130 4.130 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.415 0.585 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.385 0.615 46 H 0.260 0.740 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.053 0.947 52 H 0.045 0.955 53 H 0.062 0.938 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -16.348 21.482 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.098 4.098 4 H 0.063 0.937 5 C -0.206 4.206 6 C -0.168 4.168 7 C 0.289 3.711 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.048 3.952 11 H 0.091 0.909 12 C -0.089 4.089 13 N -0.239 5.239 14 C -0.081 4.081 15 C 0.226 3.774 16 O -0.496 6.496 17 N -0.224 5.224 18 C -0.539 4.539 19 H 0.087 0.913 20 C -0.238 4.238 21 N -0.554 5.554 22 Si 0.951 3.049 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.087 4.087 27 C -0.073 4.073 28 C -0.201 4.201 29 C -0.187 4.187 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.219 0.781 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.072 0.928 52 H 0.065 0.935 53 H 0.081 0.919 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.868 -14.955 20.263 25.200 hybrid contribution 1.154 -0.629 0.678 1.478 sum 2.022 -15.584 20.941 26.182 Atomic orbital electron populations 1.21834 0.95997 1.02019 1.01532 1.21545 0.95999 0.94388 1.03050 1.20914 0.93380 0.97107 0.98441 0.93706 1.21924 1.01313 1.00609 0.96791 1.21825 0.97251 0.91392 1.06378 1.21564 0.82063 0.92920 0.74526 1.90704 1.55761 1.48498 1.51002 1.46090 1.07802 1.08470 1.74314 1.21719 0.95799 0.83607 0.94041 0.90922 1.23475 0.97302 0.91575 0.96529 1.64480 1.12228 1.41363 1.05844 1.22021 0.94322 1.03536 0.88225 1.20820 0.90899 0.82330 0.83305 1.90496 1.23279 1.56484 1.79349 1.41957 1.08705 1.64885 1.06829 1.20479 0.89913 1.52254 0.91252 0.91308 1.27796 1.03310 0.94328 0.98398 1.70971 0.99393 1.47654 1.37337 0.82658 0.71107 0.77701 0.73384 1.19327 1.19922 1.20020 1.23264 0.93306 0.98889 0.93241 1.21631 0.91987 0.97213 0.96516 1.21924 1.01857 0.94129 1.02182 1.21812 1.03180 1.00367 0.93369 0.93982 0.91562 0.92516 0.91303 0.90090 0.91463 0.93878 0.92665 0.87173 0.85603 0.74449 0.92188 0.95205 0.90890 0.86798 0.78077 0.92942 0.91587 0.88734 0.89629 0.90237 0.92768 0.93544 0.91919 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.67 71.98 0.70 -1.60 16 2 C -0.11 -1.55 5.40 30.59 0.17 -1.38 16 3 C -0.08 -1.56 2.04 -10.79 -0.02 -1.58 16 4 H 0.04 1.19 7.95 -2.39 -0.02 1.17 16 5 C -0.15 -3.08 8.69 71.98 0.63 -2.45 16 6 C -0.13 -2.14 5.17 29.85 0.15 -1.99 16 7 C 0.50 13.16 7.55 87.65 0.66 13.83 16 8 O -0.58 -21.66 13.61 -3.06 -0.04 -21.70 16 9 N -0.71 -15.89 4.92 -436.85 -2.15 -18.04 16 10 C 0.16 4.34 2.85 46.20 0.13 4.47 16 11 H 0.07 2.51 7.27 -2.39 -0.02 2.49 16 12 C 0.04 1.50 4.98 86.65 0.43 1.93 16 13 N -0.51 -17.58 5.26 -887.57 -4.67 -22.25 16 14 C 0.05 1.80 5.52 85.56 0.47 2.27 16 15 C 0.44 21.83 7.49 87.66 0.66 22.48 16 16 O -0.61 -35.85 13.10 -3.05 -0.04 -35.89 16 17 N -0.58 -30.69 5.28 -306.98 -1.62 -32.31 16 18 C -0.41 -24.20 9.68 84.04 0.81 -23.39 16 19 H 0.07 4.41 7.16 -2.91 -0.02 4.39 16 20 C -0.04 -2.22 5.50 84.93 0.47 -1.75 16 21 N -0.91 -51.74 13.68 21.66 0.30 -51.44 16 22 Si 1.13 49.96 29.92 68.60 2.05 52.02 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.04 0.92 6.03 86.44 0.52 1.44 16 27 C -0.07 -1.39 0.95 -51.30 -0.05 -1.44 16 28 C -0.14 -1.77 7.02 71.98 0.51 -1.26 16 29 C -0.13 -2.10 8.22 71.98 0.59 -1.50 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 0.83 6.56 -2.39 -0.02 0.81 16 33 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.04 1.18 5.95 -2.39 -0.01 1.17 16 37 H 0.05 1.09 6.56 -2.39 -0.02 1.07 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 6.12 5.93 -92.71 -0.55 5.57 16 41 H 0.06 3.00 5.97 -2.39 -0.01 2.98 16 42 H 0.03 1.10 8.02 -2.38 -0.02 1.08 16 43 H 0.07 2.24 7.81 -2.39 -0.02 2.22 16 44 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.38 18.37 6.73 -92.71 -0.62 17.75 16 46 H 0.26 14.16 6.78 -92.71 -0.63 13.54 16 47 H 0.07 1.27 7.11 -2.38 -0.02 1.25 16 48 H 0.09 1.93 7.68 -2.38 -0.02 1.91 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.08 0.70 6.99 -2.39 -0.02 0.69 16 51 H 0.05 0.74 7.96 -2.39 -0.02 0.72 16 52 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 53 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -81.84 413.98 0.51 -81.33 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.14 Total: 40.22 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.82 Total: 8.07 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -8.14 Total: -124.04 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -0.08 Total: -57.60 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.05 Total: 52.02 kcal Total: -81.84 0.51 -81.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717580342.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.946 kcal (2) G-P(sol) polarization free energy of solvation -81.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds