Wall clock time and date at job start Tue Mar 31 2020 23:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47342 * 2 1 4 4 H 1.09003 * 109.46908 * 305.23071 * 3 2 1 5 5 C 1.53002 * 109.47003 * 185.23566 * 3 2 1 6 6 N 1.46498 * 109.46953 * 185.00064 * 5 3 2 7 7 C 1.34782 * 120.00081 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99447 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.47078 * 179.97438 * 9 7 6 11 11 C 1.53777 * 113.61451 * 274.13672 * 10 9 7 12 12 C 1.53957 * 87.02042 * 220.04565 * 11 10 9 13 13 C 1.52995 * 113.53680 * 270.81438 * 12 11 10 14 14 C 1.52993 * 113.74350 * 139.94064 * 12 11 10 15 15 C 1.53780 * 87.11043 * 25.36270 * 12 11 10 16 16 N 1.46892 * 109.47255 * 65.23318 * 3 2 1 17 17 C 1.46905 * 111.00180 * 58.35379 * 16 3 2 18 18 C 1.50698 * 109.47163 * 174.49088 * 17 16 3 19 19 O 1.21296 * 120.00419 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99654 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99873 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99638 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00138 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00251 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47191 * 59.99474 * 25 23 21 27 27 H 1.48500 * 109.47671 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46977 * 299.99803 * 25 23 21 29 29 H 1.08996 * 109.47928 * 174.88851 * 1 2 3 30 30 H 1.09003 * 109.46773 * 294.89031 * 1 2 3 31 31 H 1.08997 * 109.47253 * 54.88336 * 1 2 3 32 32 H 1.09000 * 109.46810 * 239.99598 * 2 1 3 33 33 H 1.08999 * 109.47262 * 120.00116 * 2 1 3 34 34 H 1.08999 * 109.46690 * 304.99619 * 5 3 2 35 35 H 1.08998 * 109.47379 * 64.99889 * 5 3 2 36 36 H 0.96998 * 120.00571 * 359.97438 * 6 5 3 37 37 H 1.08999 * 109.47103 * 299.99469 * 9 7 6 38 38 H 1.08998 * 109.47214 * 59.99892 * 9 7 6 39 39 H 1.09002 * 112.84671 * 45.33488 * 10 9 7 40 40 H 1.08998 * 113.61463 * 334.56547 * 11 10 9 41 41 H 1.09000 * 113.61294 * 105.47169 * 11 10 9 42 42 H 1.09003 * 109.47500 * 157.49394 * 13 12 11 43 43 H 1.09005 * 109.47309 * 277.49078 * 13 12 11 44 44 H 1.08999 * 109.47717 * 37.49081 * 13 12 11 45 45 H 1.08999 * 109.47771 * 322.41007 * 14 12 11 46 46 H 1.09005 * 109.47158 * 82.40602 * 14 12 11 47 47 H 1.08995 * 109.47291 * 202.40309 * 14 12 11 48 48 H 1.08998 * 113.61860 * 220.09463 * 15 12 11 49 49 H 1.09003 * 113.61289 * 89.18521 * 15 12 11 50 50 H 1.00900 * 111.00181 * 294.39912 * 16 3 2 51 51 H 1.08998 * 109.46935 * 294.49220 * 17 16 3 52 52 H 1.08992 * 109.47047 * 54.48892 * 17 16 3 53 53 H 0.97005 * 120.00169 * 0.02562 * 20 18 17 54 54 H 0.96998 * 119.99893 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 3.5644 1.4444 -0.1316 6 7 4.0631 2.8166 -0.0119 7 6 5.3855 3.0629 -0.0965 8 8 6.1626 2.1482 -0.2714 9 6 5.8985 4.4745 0.0260 10 6 7.4230 4.4763 -0.1042 11 6 8.1548 4.2121 1.2222 12 6 9.1664 5.2873 0.7854 13 6 10.3353 4.7311 -0.0302 14 6 9.6190 6.2054 1.9225 15 6 8.0419 5.8838 -0.0774 16 7 1.6563 2.0975 1.2575 17 6 2.1974 1.3728 2.4152 18 6 1.8997 2.1445 3.6749 19 8 1.2958 3.1947 3.6144 20 7 2.3037 1.6672 4.8688 21 6 2.0325 2.3690 6.0149 22 1 1.4955 3.3045 5.9609 23 6 2.4493 1.8773 7.2458 24 7 3.1032 0.7392 7.3114 25 14 2.0805 2.8337 8.8073 26 1 0.6110 2.9843 8.9601 27 1 2.6268 2.1009 9.9776 28 1 2.7098 4.1764 8.7256 29 1 -0.3635 -1.0235 -0.0916 30 1 -0.3633 0.4325 0.9323 31 1 -0.3633 0.5911 -0.8406 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9979 0.8301 0.6575 35 1 3.8457 1.0390 -1.1036 36 1 3.4417 3.5481 0.1283 37 1 5.4653 5.0883 -0.7637 38 1 5.6167 4.8804 0.9976 39 1 7.7780 3.8589 -0.9293 40 1 7.5759 4.4894 2.1031 41 1 8.5826 3.2120 1.2931 42 1 10.7734 5.5299 -0.6287 43 1 11.0899 4.3273 0.6449 44 1 9.9755 3.9399 -0.6879 45 1 8.7759 6.4091 2.5826 46 1 10.4138 5.7188 2.4880 47 1 9.9899 7.1424 1.5072 48 1 8.3785 6.2314 -1.0541 49 1 7.4320 6.6190 0.4476 50 1 0.6539 2.1907 1.3255 51 1 1.7355 0.3873 2.4751 52 1 3.2759 1.2623 2.3030 53 1 2.7863 0.8271 4.9172 54 1 3.3945 0.3961 8.1706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732208635.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:21 Heat of formation + Delta-G solvation = -99.734929 kcal Electronic energy + Delta-G solvation = -30259.061791 eV Core-core repulsion = 26229.493363 eV Total energy + Delta-G solvation = -4029.568428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.24644 -40.46065 -39.84841 -38.56838 -35.95700 -35.03563 -33.31784 -33.21073 -32.78615 -30.20665 -28.76576 -28.27238 -27.78179 -26.59576 -26.04190 -24.29091 -22.13323 -21.74762 -20.97265 -20.43628 -19.85739 -19.18378 -18.32186 -17.90436 -17.10680 -16.99924 -16.52996 -16.41695 -16.03972 -15.89478 -15.67511 -15.26386 -15.23132 -15.07046 -14.78638 -14.67136 -14.34554 -14.11950 -13.97214 -13.59474 -13.53389 -13.51443 -13.19055 -13.11266 -12.88655 -12.81800 -12.68458 -12.67316 -12.43468 -12.31224 -12.25125 -12.13888 -11.84775 -11.70620 -11.67689 -11.49041 -11.44474 -10.98395 -10.87553 -10.66819 -10.34460 -10.01598 -9.94881 -9.34062 -8.46533 -5.95558 1.39168 1.40766 1.51861 1.74763 2.05643 2.27471 2.34684 2.94428 3.20592 3.52005 3.58324 3.67939 3.73352 3.76626 3.84216 4.00146 4.11334 4.16354 4.28004 4.31264 4.34927 4.44898 4.46469 4.52474 4.56286 4.61282 4.69813 4.77226 4.78767 4.79857 4.81097 4.90255 4.92199 4.94369 5.01413 5.03421 5.04594 5.10635 5.19404 5.24639 5.28976 5.34487 5.36947 5.40133 5.55247 5.59132 5.69969 5.87649 6.08091 6.40543 6.59234 6.69250 7.12271 7.36706 7.56221 8.10860 8.70772 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006839 B = 0.003264 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4093.446346 B = 8576.805824 C =11887.064969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.113 0.887 5 C 0.126 3.874 6 N -0.711 5.711 7 C 0.505 3.495 8 O -0.588 6.588 9 C -0.128 4.128 10 C -0.090 4.090 11 C -0.135 4.135 12 C -0.089 4.089 13 C -0.127 4.127 14 C -0.135 4.135 15 C -0.116 4.116 16 N -0.663 5.663 17 C 0.064 3.936 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.352 0.648 51 H 0.065 0.935 52 H 0.088 0.912 53 H 0.393 0.607 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 4.756 -18.674 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.197 4.197 3 C -0.026 4.026 4 H 0.131 0.869 5 C 0.001 3.999 6 N -0.362 5.362 7 C 0.293 3.707 8 O -0.469 6.469 9 C -0.168 4.168 10 C -0.108 4.108 11 C -0.173 4.173 12 C -0.089 4.089 13 C -0.184 4.184 14 C -0.192 4.192 15 C -0.153 4.153 16 N -0.296 5.296 17 C -0.069 4.069 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.252 0.748 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.172 0.828 51 H 0.082 0.918 52 H 0.106 0.894 53 H 0.226 0.774 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.906 5.156 -18.691 20.583 hybrid contribution -0.750 -1.009 1.365 1.856 sum 6.155 4.147 -17.326 18.849 Atomic orbital electron populations 1.21740 0.94714 1.02548 1.01784 1.22179 0.97117 0.97068 1.03321 1.21965 0.93540 0.94364 0.92686 0.86903 1.21402 0.93471 0.83707 1.01289 1.45899 1.07382 1.10322 1.72647 1.21234 0.82076 0.92294 0.75083 1.90649 1.56928 1.48037 1.51311 1.21725 0.97002 0.92691 1.05345 1.22189 0.92170 0.98213 0.98262 1.23183 0.98288 0.98445 0.97370 1.21817 0.94451 0.96016 0.96617 1.21585 0.96582 1.00852 0.99356 1.21725 1.01068 0.99245 0.97187 1.23080 0.96524 0.95219 1.00483 1.60143 1.18469 1.51165 0.99795 1.21494 1.01342 0.95217 0.88803 1.20818 0.83396 0.87525 0.85390 1.90482 1.46380 1.26108 1.87274 1.41965 1.51152 1.22840 1.05394 1.19637 1.35739 1.05822 0.84981 0.90076 1.26055 0.96120 0.97248 1.01974 1.69680 1.38606 1.20318 1.27776 0.84998 0.78745 0.78022 0.76657 1.19492 1.19681 1.19639 0.91804 0.94122 0.91104 0.89510 0.92396 0.93675 0.90484 0.74829 0.86212 0.88604 0.89772 0.91140 0.93585 0.91050 0.92565 0.93123 0.93003 0.92894 0.91361 0.90133 0.89164 0.82785 0.91769 0.89387 0.77372 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.57 71.98 0.69 -1.85 16 2 C -0.16 -2.80 5.15 30.59 0.16 -2.64 16 3 C 0.08 1.67 2.70 44.92 0.12 1.79 16 4 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.13 2.92 4.72 86.38 0.41 3.33 16 6 N -0.71 -17.20 5.39 -463.06 -2.50 -19.70 16 7 C 0.51 13.77 7.83 87.65 0.69 14.45 16 8 O -0.59 -20.44 15.79 -3.03 -0.05 -20.48 16 9 C -0.13 -2.66 5.52 29.85 0.16 -2.49 16 10 C -0.09 -1.92 2.76 -10.27 -0.03 -1.94 16 11 C -0.14 -3.28 6.76 31.18 0.21 -3.06 16 12 C -0.09 -1.66 1.39 -51.60 -0.07 -1.74 16 13 C -0.13 -2.16 9.07 71.98 0.65 -1.51 16 14 C -0.14 -2.33 9.20 71.98 0.66 -1.67 16 15 C -0.12 -1.92 6.79 31.12 0.21 -1.71 16 16 N -0.66 -18.15 5.35 -495.60 -2.65 -20.81 16 17 C 0.06 2.15 5.33 85.56 0.46 2.61 16 18 C 0.44 20.66 7.83 87.66 0.69 21.35 16 19 O -0.62 -32.91 15.90 -3.08 -0.05 -32.96 16 20 N -0.58 -29.82 5.29 -306.98 -1.62 -31.44 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 25 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.82 7.16 -2.39 -0.02 0.80 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.21 6.22 -2.39 -0.01 1.19 16 34 H 0.04 1.26 6.59 -2.39 -0.02 1.24 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.41 9.25 8.14 -92.71 -0.75 8.50 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 2.02 7.87 -2.39 -0.02 2.00 16 39 H 0.08 2.03 7.25 -2.39 -0.02 2.01 16 40 H 0.07 1.81 7.75 -2.39 -0.02 1.80 16 41 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.05 0.94 7.34 -2.39 -0.02 0.92 16 45 H 0.05 0.95 7.96 -2.39 -0.02 0.93 16 46 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 49 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 50 H 0.35 9.90 7.40 -89.69 -0.66 9.24 16 51 H 0.06 1.97 6.47 -2.39 -0.02 1.95 16 52 H 0.09 2.99 6.18 -2.39 -0.01 2.98 16 53 H 0.39 19.74 7.90 -92.70 -0.73 19.01 16 54 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -69.98 426.81 0.49 -69.49 By element: Atomic # 1 Polarization: 55.84 SS G_CDS: -1.24 Total: 54.60 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.29 Total: 6.52 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -6.49 Total: -122.32 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -0.10 Total: -53.44 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -69.98 0.49 -69.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732208635.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.242 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds