Wall clock time and date at job start Tue Mar 31 2020 23:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47214 * 180.02562 * 9 7 6 11 11 C 1.53781 * 113.61860 * 274.14021 * 10 9 7 12 12 C 1.53944 * 87.01991 * 220.04713 * 11 10 9 13 13 C 1.52999 * 113.54087 * 270.80951 * 12 11 10 14 14 C 1.53009 * 113.74518 * 139.94223 * 12 11 10 15 15 C 1.53771 * 113.61679 * 176.53051 * 10 9 7 16 16 N 1.46901 * 109.46853 * 294.61081 * 3 2 1 17 17 C 1.46906 * 110.99674 * 300.92051 * 16 3 2 18 18 C 1.50702 * 109.46969 * 185.68018 * 17 16 3 19 19 O 1.21289 * 119.99926 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99669 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99875 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99503 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00219 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00139 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00063 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47477 * 89.99934 * 25 23 21 27 27 H 1.48505 * 109.47105 * 210.00213 * 25 23 21 28 28 H 1.48505 * 109.47178 * 329.99665 * 25 23 21 29 29 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 30 30 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 31 31 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 33 33 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 34 34 H 1.09005 * 109.47214 * 294.99805 * 5 3 2 35 35 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 36 36 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08992 * 109.47000 * 300.00406 * 9 7 6 38 38 H 1.09004 * 109.46825 * 60.00248 * 9 7 6 39 39 H 1.08999 * 112.84750 * 45.33301 * 10 9 7 40 40 H 1.08998 * 113.61136 * 334.57097 * 11 10 9 41 41 H 1.08998 * 113.61689 * 105.46340 * 11 10 9 42 42 H 1.08999 * 109.47388 * 157.49714 * 13 12 11 43 43 H 1.09002 * 109.47254 * 277.49926 * 13 12 11 44 44 H 1.09000 * 109.46858 * 37.49482 * 13 12 11 45 45 H 1.09004 * 109.46324 * 322.40068 * 14 12 11 46 46 H 1.09002 * 109.47121 * 82.39748 * 14 12 11 47 47 H 1.08995 * 109.47433 * 202.40300 * 14 12 11 48 48 H 1.09004 * 113.62155 * 254.53499 * 15 10 9 49 49 H 1.09006 * 113.61546 * 25.43451 * 15 10 9 50 50 H 1.00896 * 111.00131 * 64.86814 * 16 3 2 51 51 H 1.09002 * 109.47048 * 65.68091 * 17 16 3 52 52 H 1.09004 * 109.47096 * 305.67600 * 17 16 3 53 53 H 0.97000 * 120.00767 * 359.97438 * 20 18 17 54 54 H 0.96999 * 120.00146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 6 7.4223 4.4770 0.1165 11 6 7.9111 4.5438 1.5730 12 6 9.0042 5.5079 1.0775 13 6 10.2837 4.8009 0.6260 14 6 9.2745 6.6747 2.0297 15 6 8.0562 5.8642 -0.0798 16 7 1.6594 2.0964 -1.2592 17 6 2.2178 1.3803 -2.4140 18 6 1.9258 2.1538 -3.6739 19 8 1.3124 3.1985 -3.6157 20 7 2.3453 1.6841 -4.8654 21 6 2.0792 2.3875 -6.0118 22 1 1.5330 3.3178 -5.9599 23 6 2.5121 1.9036 -7.2401 24 7 2.2575 2.5781 -8.3389 25 14 3.4562 0.2942 -7.3299 26 1 2.5021 -0.8304 -7.5031 27 1 4.3911 0.3324 -8.4831 28 1 4.2262 0.1014 -6.0748 29 1 -0.3633 0.5314 -0.8796 30 1 -0.3633 -1.0275 -0.0203 31 1 -0.3634 0.4961 0.9000 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1086 35 1 3.9997 0.8297 -0.6519 36 1 3.4418 3.5480 -0.1274 37 1 5.6199 4.8786 -0.9925 38 1 5.4623 5.0903 0.7678 39 1 7.9004 3.6917 -0.4689 40 1 7.1958 5.0069 2.2528 41 1 8.2997 3.5967 1.9471 42 1 10.8339 5.4470 -0.0580 43 1 10.9033 4.5807 1.4954 44 1 10.0255 3.8711 0.1191 45 1 8.3352 7.0094 2.4699 46 1 9.9507 6.3493 2.8203 47 1 9.7301 7.4965 1.4773 48 1 8.5620 5.9816 -1.0382 49 1 7.3808 6.6891 0.1473 50 1 0.6567 2.1787 -1.3352 51 1 1.7650 0.3911 -2.4817 52 1 3.2962 1.2787 -2.2917 53 1 2.8356 0.8484 -4.9121 54 1 2.5594 2.2401 -9.1965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732208636.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:25 Heat of formation + Delta-G solvation = -94.492975 kcal Electronic energy + Delta-G solvation = -30153.096065 eV Core-core repulsion = 26123.754945 eV Total energy + Delta-G solvation = -4029.341119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24866 -40.54623 -39.89419 -38.60524 -36.00516 -35.03199 -33.75924 -33.21023 -32.85767 -30.21284 -28.83270 -28.26957 -27.83539 -26.58024 -25.86851 -24.27730 -22.12314 -21.68436 -21.10967 -20.67404 -20.10492 -19.17096 -18.27254 -17.90716 -17.19883 -16.96025 -16.66892 -16.52545 -16.04018 -15.75601 -15.57632 -15.28701 -15.13614 -15.07238 -14.80354 -14.55695 -14.53218 -14.28871 -14.08548 -13.90294 -13.60871 -13.55296 -13.24151 -13.09091 -12.95645 -12.81987 -12.68234 -12.66531 -12.44062 -12.30105 -12.23574 -12.01341 -11.82715 -11.68587 -11.66988 -11.51937 -11.43850 -10.98141 -10.87293 -10.65984 -10.43832 -10.25072 -9.94571 -9.34718 -8.42525 -6.02384 1.28094 1.31677 1.40574 1.74875 1.95292 2.20120 2.33026 2.73970 3.14097 3.42632 3.58435 3.68843 3.72751 3.76480 3.83855 3.99651 4.12556 4.15999 4.17233 4.31975 4.34702 4.40892 4.44167 4.48314 4.56722 4.60677 4.69283 4.78149 4.79199 4.80989 4.82764 4.90828 4.92838 4.95353 5.01851 5.04473 5.06417 5.12209 5.20195 5.25718 5.30670 5.35245 5.38141 5.50961 5.56456 5.60939 5.69467 5.89725 6.02042 6.38617 6.58648 6.69012 6.87606 7.36451 7.39406 7.95315 8.74995 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.002849 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.628913 B = 9824.954095 C =12104.195460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.110 0.890 5 C 0.125 3.875 6 N -0.712 5.712 7 C 0.507 3.493 8 O -0.587 6.587 9 C -0.129 4.129 10 C -0.096 4.096 11 C -0.120 4.120 12 C -0.089 4.089 13 C -0.130 4.130 14 C -0.132 4.132 15 C -0.124 4.124 16 N -0.667 5.667 17 C 0.059 3.941 18 C 0.452 3.548 19 O -0.606 6.606 20 N -0.595 5.595 21 C -0.324 4.324 22 H 0.059 0.941 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.958 3.042 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.239 1.239 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.415 0.585 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.095 0.905 50 H 0.352 0.648 51 H 0.076 0.924 52 H 0.097 0.903 53 H 0.386 0.614 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -1.558 24.305 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.128 0.872 5 C 0.000 4.000 6 N -0.364 5.364 7 C 0.294 3.706 8 O -0.468 6.468 9 C -0.168 4.168 10 C -0.115 4.115 11 C -0.158 4.158 12 C -0.089 4.089 13 C -0.187 4.187 14 C -0.189 4.189 15 C -0.162 4.162 16 N -0.300 5.300 17 C -0.074 4.074 18 C 0.240 3.760 19 O -0.490 6.490 20 N -0.237 5.237 21 C -0.453 4.453 22 H 0.077 0.923 23 C -0.212 4.212 24 N -0.574 5.574 25 Si 0.779 3.221 26 H -0.180 1.180 27 H -0.200 1.200 28 H -0.162 1.162 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.113 0.887 50 H 0.173 0.827 51 H 0.093 0.907 52 H 0.115 0.885 53 H 0.221 0.779 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.549 -1.008 24.280 26.110 hybrid contribution -0.494 -1.274 -1.138 1.779 sum 9.054 -2.282 23.142 24.954 Atomic orbital electron populations 1.21752 0.94879 1.02356 1.01953 1.22181 0.96965 0.96908 1.03557 1.21950 0.93622 0.94483 0.92488 0.87181 1.21431 0.93356 0.83656 1.01510 1.45920 1.07391 1.10446 1.72606 1.21174 0.82108 0.92160 0.75114 1.90648 1.56933 1.47983 1.51211 1.21724 0.96882 0.92869 1.05346 1.22192 0.92930 0.98084 0.98322 1.23119 0.98066 0.98881 0.95686 1.21798 0.94236 0.96335 0.96518 1.21608 0.96085 0.99727 1.01300 1.21706 1.01936 0.96822 0.98435 1.23141 0.98266 0.96292 0.98479 1.60142 1.18076 1.51868 0.99932 1.21613 1.01966 0.95516 0.88273 1.20910 0.82584 0.87286 0.85197 1.90536 1.45011 1.26395 1.87071 1.42091 1.52462 1.23120 1.06023 1.19001 1.35403 1.06269 0.84665 0.92263 1.26024 0.98517 1.02743 0.93885 1.69792 1.47356 1.41130 0.99101 0.85452 0.79002 0.77873 0.79776 1.17962 1.19981 1.16234 0.93918 0.91871 0.91357 0.91864 0.89535 0.90539 0.93097 0.74857 0.88485 0.86546 0.91035 0.89315 0.93068 0.91873 0.91903 0.93645 0.92014 0.92434 0.92160 0.91747 0.88659 0.82690 0.90661 0.88460 0.77881 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.71 71.98 0.70 -1.54 16 2 C -0.16 -2.35 5.17 30.60 0.16 -2.19 16 3 C 0.08 1.48 2.70 44.92 0.12 1.60 16 4 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 5 C 0.12 2.57 4.70 86.38 0.41 2.98 16 6 N -0.71 -15.87 5.39 -463.05 -2.50 -18.37 16 7 C 0.51 12.95 7.83 87.66 0.69 13.63 16 8 O -0.59 -19.20 15.79 -3.03 -0.05 -19.25 16 9 C -0.13 -2.56 5.52 29.85 0.16 -2.39 16 10 C -0.10 -2.00 2.76 -10.27 -0.03 -2.03 16 11 C -0.12 -2.23 6.76 31.18 0.21 -2.02 16 12 C -0.09 -1.43 1.39 -51.60 -0.07 -1.50 16 13 C -0.13 -2.13 9.07 71.98 0.65 -1.48 16 14 C -0.13 -1.69 9.20 71.99 0.66 -1.02 16 15 C -0.12 -2.10 6.79 31.12 0.21 -1.89 16 16 N -0.67 -16.70 5.36 -495.55 -2.65 -19.36 16 17 C 0.06 1.75 5.34 85.56 0.46 2.20 16 18 C 0.45 19.95 7.83 87.66 0.69 20.64 16 19 O -0.61 -32.23 15.90 -3.06 -0.05 -32.27 16 20 N -0.60 -28.16 5.09 -306.99 -1.56 -29.73 16 21 C -0.32 -18.93 10.16 84.04 0.85 -18.08 16 22 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 24 N -0.93 -56.32 13.96 21.66 0.30 -56.02 16 25 Si 0.96 39.61 27.74 68.60 1.90 41.51 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.24 -8.60 6.52 99.48 0.65 -7.95 16 29 H 0.04 0.76 6.85 -2.39 -0.02 0.75 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.06 6.23 -2.39 -0.01 1.04 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.05 1.22 6.57 -2.39 -0.02 1.20 16 36 H 0.41 8.64 8.14 -92.71 -0.75 7.89 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.12 1.70 7.88 -2.38 -0.02 1.68 16 39 H 0.07 1.87 7.25 -2.39 -0.02 1.85 16 40 H 0.09 1.42 7.75 -2.39 -0.02 1.40 16 41 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.04 0.87 7.34 -2.39 -0.02 0.85 16 45 H 0.06 0.72 7.96 -2.38 -0.02 0.70 16 46 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.06 1.14 8.10 -2.38 -0.02 1.12 16 49 H 0.09 1.36 8.06 -2.38 -0.02 1.34 16 50 H 0.35 9.22 7.23 -89.70 -0.65 8.58 16 51 H 0.08 1.89 6.49 -2.39 -0.02 1.88 16 52 H 0.10 2.80 6.15 -2.39 -0.01 2.78 16 53 H 0.39 15.56 5.76 -92.71 -0.53 15.03 16 54 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.50 423.35 0.65 -75.85 By element: Atomic # 1 Polarization: 52.06 SS G_CDS: -1.09 Total: 50.97 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.34 Total: 6.66 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -6.41 Total: -123.47 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.10 Total: -51.52 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.90 Total: 41.51 kcal Total: -76.50 0.65 -75.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732208636.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.643 kcal (2) G-P(sol) polarization free energy of solvation -76.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds