Wall clock time and date at job start Wed Apr 1 2020 00:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47400 * 2 1 4 4 N 1.46896 * 109.46956 * 120.00380 * 2 1 3 5 5 C 1.47847 * 111.00312 * 49.77588 * 4 2 1 6 6 C 1.54905 * 104.79575 * 146.36569 * 5 4 2 7 7 C 1.55402 * 101.74400 * 323.02110 * 6 5 4 8 8 C 1.47450 * 111.00376 * 170.62167 * 4 2 1 9 9 H 1.08997 * 109.88695 * 117.16605 * 8 4 2 10 10 C 1.50698 * 109.88200 * 356.14606 * 8 4 2 11 11 O 1.21278 * 120.00466 * 298.72311 * 10 8 4 12 12 N 1.34775 * 119.99985 * 118.72414 * 10 8 4 13 13 C 1.46504 * 120.00112 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46968 * 174.73733 * 13 12 10 15 15 N 1.46496 * 109.54292 * 55.05654 * 14 13 12 16 16 C 1.36940 * 120.00531 * 63.37776 * 15 14 13 17 17 H 1.08000 * 119.99391 * 354.80534 * 16 15 14 18 18 C 1.38815 * 120.00167 * 174.80539 * 16 15 14 19 19 N 1.31614 * 119.99734 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99762 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47053 * 59.99981 * 20 18 16 22 22 H 1.48495 * 109.46923 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46868 * 300.00153 * 20 18 16 24 24 C 1.53178 * 109.54196 * 175.22996 * 14 13 12 25 25 C 1.53277 * 109.06674 * 176.85000 * 24 14 13 26 26 O 1.42904 * 109.45982 * 302.45007 * 25 24 14 27 27 C 1.42904 * 114.09720 * 61.15622 * 26 25 24 28 28 C 1.53093 * 109.41192 * 298.83853 * 27 26 25 29 29 H 1.09002 * 109.47357 * 299.99906 * 1 2 3 30 30 H 1.08999 * 109.47251 * 59.99990 * 1 2 3 31 31 H 1.09001 * 109.47441 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46850 * 240.00074 * 2 1 3 33 33 H 1.09003 * 109.47139 * 183.32344 * 3 2 1 34 34 H 1.08998 * 109.46976 * 303.32814 * 3 2 1 35 35 H 1.09001 * 109.46772 * 63.32717 * 3 2 1 36 36 H 1.09002 * 110.37361 * 265.19412 * 5 4 2 37 37 H 1.09001 * 110.37419 * 27.53712 * 5 4 2 38 38 H 1.09004 * 110.99489 * 81.02274 * 6 5 4 39 39 H 1.09004 * 110.99436 * 204.80366 * 6 5 4 40 40 H 1.09006 * 110.67715 * 277.18087 * 7 6 5 41 41 H 1.08995 * 110.84902 * 153.86373 * 7 6 5 42 42 H 0.97005 * 120.00185 * 359.97438 * 12 10 8 43 43 H 1.08994 * 109.47257 * 54.73876 * 13 12 10 44 44 H 1.09003 * 109.46979 * 294.73501 * 13 12 10 45 45 H 0.97005 * 119.99902 * 243.64851 * 15 14 13 46 46 H 0.97004 * 119.99385 * 179.97438 * 19 18 16 47 47 H 1.09004 * 109.52068 * 296.84227 * 24 14 13 48 48 H 1.08997 * 109.52338 * 57.02617 * 24 14 13 49 49 H 1.08992 * 109.46250 * 182.44841 * 25 24 14 50 50 H 1.09005 * 109.46633 * 62.44635 * 25 24 14 51 51 H 1.09003 * 109.47750 * 178.86066 * 27 26 25 52 52 H 1.08999 * 109.49239 * 58.82947 * 27 26 25 53 53 H 1.08997 * 109.52272 * 297.70425 * 28 27 26 54 54 H 1.09002 * 109.56855 * 177.54716 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.3558 -2.0036 1.3623 6 6 2.4355 -2.9179 1.9930 7 6 3.7243 -2.4251 1.2781 8 6 3.4762 -0.9096 1.1267 9 1 3.9722 -0.3702 1.9336 10 6 3.9993 -0.4349 -0.2045 11 8 3.6004 -0.9452 -1.2298 12 7 4.9105 0.5569 -0.2556 13 6 5.4195 1.0180 -1.5496 14 6 6.3325 2.2273 -1.3369 15 7 7.3908 1.8809 -0.3850 16 6 8.3000 0.9055 -0.6968 17 1 8.1880 0.3338 -1.6062 18 6 9.3654 0.6515 0.1560 19 7 9.5015 1.3479 1.2645 20 14 10.6060 -0.6786 -0.2698 21 1 11.2535 -0.3547 -1.5664 22 1 11.6384 -0.7516 0.7950 23 1 9.9119 -1.9870 -0.3763 24 6 6.9593 2.6373 -2.6731 25 6 7.8086 3.8958 -2.4624 26 8 6.9921 4.9361 -1.9212 27 6 6.4174 4.6253 -0.6503 28 6 5.5122 3.3983 -0.7876 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1284 1.4430 -0.0596 34 1 1.6288 1.9732 -0.8586 35 1 1.7262 1.9387 0.9183 36 1 0.4978 -1.9143 2.0286 37 1 1.0459 -2.3950 0.3934 38 1 2.5030 -2.7577 3.0691 39 1 2.2394 -3.9663 1.7681 40 1 3.8275 -2.8982 0.3014 41 1 4.6046 -2.6120 1.8930 42 1 5.2294 0.9653 0.5645 43 1 4.5835 1.3020 -2.1886 44 1 5.9840 0.2157 -2.0248 45 1 7.4451 2.3397 0.4679 46 1 10.2459 1.1701 1.8605 47 1 7.5888 1.8282 -3.0436 48 1 6.1711 2.8471 -3.3961 49 1 8.2228 4.2184 -3.4176 50 1 8.6210 3.6741 -1.7703 51 1 5.8292 5.4736 -0.3001 52 1 7.2113 4.4130 0.0658 53 1 4.6947 3.6235 -1.4725 54 1 5.1067 3.1327 0.1888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733467648.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:21 Heat of formation + Delta-G solvation = -70.867199 kcal Electronic energy + Delta-G solvation = -32938.039811 eV Core-core repulsion = 28909.723182 eV Total energy + Delta-G solvation = -4028.316629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.09543 -40.68798 -38.80751 -37.24296 -35.39694 -35.17796 -33.90276 -31.97892 -31.06679 -30.87078 -30.13112 -28.11171 -27.77029 -25.94573 -24.54739 -24.11161 -23.02588 -22.21778 -21.73956 -20.72169 -20.01378 -19.08799 -18.11991 -17.74171 -17.25020 -16.96152 -16.80300 -16.57804 -16.23903 -16.01656 -15.83287 -15.46551 -15.30024 -14.94577 -14.63187 -14.49326 -14.17672 -14.02428 -13.70136 -13.58126 -13.31218 -13.19968 -13.06797 -12.98789 -12.96049 -12.82139 -12.70767 -12.66913 -12.27559 -12.18190 -12.11581 -12.07355 -11.88032 -11.75364 -11.73873 -11.70418 -11.41194 -11.13792 -11.07090 -10.91884 -10.32771 -9.87109 -9.17328 -8.97186 -7.90415 -5.16814 1.45762 1.48116 1.51785 1.53750 2.28323 2.56748 2.94975 3.07316 3.42144 3.50848 3.68019 3.74343 3.83010 3.87409 4.00002 4.12572 4.14585 4.16465 4.17338 4.23208 4.35848 4.47299 4.50656 4.55973 4.59852 4.71775 4.75697 4.76691 4.79604 4.81824 4.84652 4.88994 4.91666 4.92641 5.00255 5.03056 5.06130 5.07339 5.09208 5.21200 5.23457 5.27177 5.30611 5.33878 5.40696 5.56354 5.62280 5.90183 6.05714 6.30756 6.36701 6.60144 7.23655 7.40627 8.08889 8.36240 9.31280 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.004388 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.478267 B = 6380.179158 C = 8228.773005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 C -0.160 4.160 4 N -0.497 5.497 5 C 0.038 3.962 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.054 3.946 9 H 0.105 0.895 10 C 0.508 3.492 11 O -0.580 6.580 12 N -0.694 5.694 13 C 0.128 3.872 14 C 0.188 3.812 15 N -0.711 5.711 16 C -0.215 4.215 17 H 0.064 0.936 18 C -0.057 4.057 19 N -0.957 5.957 20 Si 0.948 3.052 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.290 1.290 24 C -0.149 4.149 25 C 0.076 3.924 26 O -0.397 6.397 27 C 0.065 3.935 28 C -0.140 4.140 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.406 0.594 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.377 0.623 46 H 0.248 0.752 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.036 0.964 51 H 0.111 0.889 52 H 0.037 0.963 53 H 0.086 0.914 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.488 -0.423 0.296 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 C -0.218 4.218 4 N -0.223 5.223 5 C -0.089 4.089 6 C -0.155 4.155 7 C -0.170 4.170 8 C -0.058 4.058 9 H 0.123 0.877 10 C 0.296 3.704 11 O -0.461 6.461 12 N -0.343 5.343 13 C 0.001 3.999 14 C 0.098 3.902 15 N -0.352 5.352 16 C -0.347 4.347 17 H 0.082 0.918 18 C -0.250 4.250 19 N -0.608 5.608 20 Si 0.779 3.221 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.217 1.217 24 C -0.189 4.189 25 C -0.001 4.001 26 O -0.316 6.316 27 C -0.012 4.012 28 C -0.178 4.178 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.243 0.757 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.211 0.789 46 H 0.057 0.943 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.116 0.884 50 H 0.054 0.946 51 H 0.129 0.871 52 H 0.056 0.944 53 H 0.104 0.896 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.784 -0.378 -0.190 16.789 hybrid contribution 1.779 -1.332 -0.247 2.236 sum -15.004 -1.710 -0.437 15.108 Atomic orbital electron populations 1.21830 0.92959 1.02187 1.02442 1.22494 0.96981 0.95686 0.92666 1.22179 1.02530 0.95016 1.02076 1.64267 1.00642 1.20231 1.37178 1.23191 0.98162 0.87591 0.99931 1.22747 0.92128 0.99805 1.00770 1.22795 1.00640 0.92285 1.01309 1.22628 0.91249 0.98179 0.93709 0.87693 1.21153 0.78597 0.78780 0.91872 1.90540 1.59689 1.58327 1.37588 1.45968 1.41415 1.36646 1.10319 1.21628 0.96339 0.97058 0.84879 1.19995 0.88062 0.91554 0.90630 1.42472 1.31154 1.43741 1.17808 1.19131 1.02029 1.09548 1.03974 0.91813 1.25157 1.00398 1.01584 0.97847 1.69737 1.33001 1.44431 1.13583 0.85612 0.79729 0.80066 0.76673 1.21100 1.22568 1.21672 1.22438 1.00211 0.98307 0.97948 1.22386 0.92332 0.86938 0.98449 1.87798 1.66581 1.41309 1.35948 1.22574 0.95811 0.97843 0.84957 1.22277 0.98419 0.94591 1.02521 0.91530 0.91906 0.92250 0.92000 0.91747 0.92266 0.91548 0.88082 0.94033 0.89078 0.89158 0.92552 0.89563 0.75724 0.91865 0.94834 0.78881 0.94306 0.92100 0.90550 0.88428 0.94596 0.87119 0.94427 0.89570 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.87 71.98 0.64 -2.11 16 2 C 0.03 0.76 2.07 44.91 0.09 0.85 16 3 C -0.16 -3.94 8.93 71.98 0.64 -3.30 16 4 N -0.50 -12.13 5.03 -839.87 -4.22 -16.35 16 5 C 0.04 0.78 5.31 86.77 0.46 1.24 16 6 C -0.12 -2.18 7.08 32.07 0.23 -1.95 16 7 C -0.13 -3.30 6.46 31.87 0.21 -3.10 16 8 C 0.05 1.46 3.60 44.51 0.16 1.62 16 9 H 0.11 2.73 7.94 -2.39 -0.02 2.71 16 10 C 0.51 16.59 3.83 87.66 0.34 16.93 16 11 O -0.58 -22.31 13.79 -3.02 -0.04 -22.35 16 12 N -0.69 -22.39 3.43 -463.05 -1.59 -23.98 16 13 C 0.13 4.36 4.39 86.38 0.38 4.74 16 14 C 0.19 6.32 0.41 3.72 0.00 6.32 16 15 N -0.71 -29.63 3.58 -302.81 -1.08 -30.72 16 16 C -0.21 -10.49 8.68 84.03 0.73 -9.76 16 17 H 0.06 3.16 6.77 -2.91 -0.02 3.14 16 18 C -0.06 -2.98 5.50 84.86 0.47 -2.51 16 19 N -0.96 -53.30 13.06 21.65 0.28 -53.02 16 20 Si 0.95 44.32 29.55 68.60 2.03 46.35 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 C -0.15 -4.92 4.78 30.75 0.15 -4.78 16 25 C 0.08 2.55 6.68 72.07 0.48 3.03 16 26 O -0.40 -13.03 10.77 -148.98 -1.60 -14.63 16 27 C 0.06 1.90 6.67 72.01 0.48 2.38 16 28 C -0.14 -3.90 4.79 30.68 0.15 -3.75 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.11 6.51 -2.39 -0.02 1.09 16 32 H 0.06 2.01 4.88 -3.61 -0.02 2.00 16 33 H 0.06 1.73 4.18 -2.39 -0.01 1.72 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 0.92 7.06 -2.39 -0.02 0.91 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.06 1.66 7.48 -2.38 -0.02 1.64 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.41 12.94 7.30 -92.70 -0.68 12.27 16 43 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 44 H 0.03 1.35 7.54 -2.39 -0.02 1.33 16 45 H 0.38 17.05 6.86 -92.70 -0.64 16.42 16 46 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.06 2.20 7.11 -2.39 -0.02 2.19 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.04 1.45 7.75 -2.38 -0.02 1.44 16 51 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 52 H 0.04 1.29 7.17 -2.39 -0.02 1.27 16 53 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 54 H 0.08 2.08 7.40 -2.39 -0.02 2.06 16 Total: -1.00 -59.73 398.69 -1.05 -60.78 By element: Atomic # 1 Polarization: 48.47 SS G_CDS: -0.42 Total: 48.05 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.60 Total: 5.87 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -6.61 Total: -124.07 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.65 Total: -36.98 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -59.73 -1.05 -60.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733467648.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.086 kcal (2) G-P(sol) polarization free energy of solvation -59.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds