Wall clock time and date at job start Tue Mar 31 2020 23:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 H 1.09005 * 109.46951 * 54.60339 * 3 2 1 5 5 C 1.53002 * 109.47625 * 174.60897 * 3 2 1 6 6 N 1.46492 * 109.47192 * 175.00051 * 5 3 2 7 7 C 1.34782 * 119.99915 * 180.02562 * 6 5 3 8 8 O 1.21276 * 119.99906 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99789 * 179.97438 * 7 6 5 10 10 C 1.54235 * 108.89619 * 301.39528 * 9 7 6 11 11 C 1.50556 * 108.48339 * 159.18253 * 10 9 7 12 12 C 1.54059 * 112.41767 * 94.26367 * 11 10 9 13 13 C 1.54070 * 112.81888 * 318.28354 * 12 11 10 14 14 C 1.50482 * 112.48881 * 318.28283 * 13 12 11 15 15 C 1.45539 * 108.89015 * 178.60379 * 9 7 6 16 16 N 1.46901 * 109.47055 * 294.61225 * 3 2 1 17 17 C 1.46906 * 110.99674 * 300.91884 * 16 3 2 18 18 C 1.50697 * 109.47177 * 185.67526 * 17 16 3 19 19 O 1.21296 * 119.99780 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00059 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99939 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00309 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99639 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00366 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47179 * 59.99904 * 25 23 21 27 27 H 1.48497 * 109.46793 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.46862 * 300.00177 * 25 23 21 29 29 H 1.08997 * 109.47227 * 58.85737 * 1 2 3 30 30 H 1.09001 * 109.47071 * 178.86531 * 1 2 3 31 31 H 1.09001 * 109.47230 * 298.85987 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99948 * 2 1 3 33 33 H 1.09005 * 109.47259 * 119.99564 * 2 1 3 34 34 H 1.08998 * 109.46701 * 295.00058 * 5 3 2 35 35 H 1.09000 * 109.46938 * 54.99635 * 5 3 2 36 36 H 0.97009 * 120.00586 * 359.97438 * 6 5 3 37 37 H 1.09004 * 108.87013 * 60.00508 * 9 7 6 38 38 H 1.09006 * 109.62607 * 278.97398 * 10 9 7 39 39 H 1.09004 * 109.63052 * 39.55490 * 10 9 7 40 40 H 1.09000 * 108.91882 * 333.50956 * 11 10 9 41 41 H 1.09002 * 108.83852 * 214.96316 * 11 10 9 42 42 H 1.08999 * 108.81566 * 197.41874 * 12 11 10 43 43 H 1.08997 * 108.72667 * 79.07967 * 12 11 10 44 44 H 1.08997 * 108.88244 * 197.50907 * 13 12 11 45 45 H 1.08993 * 108.88032 * 79.05749 * 13 12 11 46 46 H 1.08993 * 109.63195 * 334.44211 * 14 13 12 47 47 H 1.09000 * 109.62277 * 213.86136 * 14 13 12 48 48 H 1.09000 * 108.89804 * 303.44333 * 15 9 7 49 49 H 1.08997 * 108.89847 * 62.03371 * 15 9 7 50 50 H 1.00890 * 111.00465 * 64.87339 * 16 3 2 51 51 H 1.09002 * 109.47152 * 65.67546 * 17 16 3 52 52 H 1.08999 * 109.46914 * 305.68049 * 17 16 3 53 53 H 0.97003 * 119.99589 * 0.02562 * 20 18 17 54 54 H 0.96999 * 120.00411 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 0.8378 5 6 3.5640 1.4447 0.1355 6 7 4.0629 2.8168 0.0158 7 6 5.3851 3.0632 0.1037 8 8 6.1617 2.1490 0.2822 9 6 5.8984 4.4748 -0.0200 10 6 5.4662 5.0455 -1.3862 11 6 5.5123 6.5485 -1.3117 12 6 6.8494 7.1212 -1.8191 13 6 8.0674 6.3069 -1.3425 14 6 7.9497 5.8843 0.0969 15 6 7.3446 4.4663 0.1433 16 7 1.6594 2.0964 -1.2592 17 6 2.2178 1.3803 -2.4140 18 6 1.9257 2.1538 -3.6739 19 8 1.3130 3.1990 -3.6155 20 7 2.3461 1.6847 -4.8654 21 6 2.0808 2.3886 -6.0115 22 1 1.5353 3.3192 -5.9596 23 6 2.5138 1.9046 -7.2399 24 7 3.1771 0.7720 -7.3032 25 14 2.1529 2.8641 -8.8016 26 1 2.7707 4.2112 -8.7088 27 1 2.7167 2.1398 -9.9689 28 1 0.6840 3.0036 -8.9685 29 1 -0.3633 0.5315 -0.8795 30 1 -0.3633 -1.0275 -0.0204 31 1 -0.3634 0.4960 0.9000 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8427 1.0403 1.1086 35 1 3.9997 0.8296 -0.6519 36 1 3.4418 3.5481 -0.1273 37 1 5.4573 5.0809 0.7713 38 1 6.1474 4.6947 -2.1616 39 1 4.4504 4.7219 -1.6135 40 1 5.3674 6.8556 -0.2760 41 1 4.7020 6.9558 -1.9165 42 1 6.9506 8.1463 -1.4628 43 1 6.8361 7.1282 -2.9090 44 1 8.9652 6.9139 -1.4595 45 1 8.1622 5.4171 -1.9647 46 1 7.2993 6.5776 0.6301 47 1 8.9373 5.8761 0.5580 48 1 7.5889 4.0094 1.1023 49 1 7.7864 3.8692 -0.6545 50 1 0.6568 2.1789 -1.3352 51 1 1.7651 0.3911 -2.4817 52 1 3.2962 1.2787 -2.2917 53 1 2.8364 0.8490 -4.9119 54 1 3.4791 0.4340 -8.1608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753466668.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:07 Heat of formation + Delta-G solvation = -124.310614 kcal Electronic energy + Delta-G solvation = -31181.129681 eV Core-core repulsion = 27150.495572 eV Total energy + Delta-G solvation = -4030.634109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46155 -40.33703 -39.14761 -38.39320 -35.94910 -35.16593 -33.49908 -33.30270 -32.96209 -32.78397 -29.77513 -28.16091 -26.38699 -25.96435 -25.55505 -24.13717 -22.21211 -21.74023 -20.93066 -20.43089 -20.14127 -19.85594 -18.31905 -18.21759 -17.12306 -17.08743 -16.55787 -16.49402 -16.17284 -15.89336 -15.74890 -15.40537 -15.21863 -15.08810 -14.81918 -14.73523 -14.30873 -14.12749 -14.02857 -13.86212 -13.54472 -13.52189 -13.19649 -13.12130 -13.00399 -12.88272 -12.71085 -12.42827 -12.30140 -12.16714 -12.14018 -11.84204 -11.75024 -11.68968 -11.54656 -11.48216 -11.45351 -11.21800 -11.09280 -10.62771 -10.33036 -10.00610 -9.97118 -9.33746 -8.45868 -5.94604 1.39166 1.40714 1.51661 1.66343 2.06714 2.26396 2.31015 2.94461 3.21461 3.52389 3.66085 3.68250 3.74923 3.83465 4.02155 4.13545 4.16021 4.21641 4.26810 4.28285 4.35371 4.35425 4.43291 4.45864 4.46998 4.52577 4.56997 4.65540 4.77867 4.79607 4.93144 4.94255 4.97325 5.01931 5.10911 5.13593 5.24186 5.25569 5.31060 5.35305 5.36783 5.37183 5.38807 5.40759 5.48321 5.54748 5.60398 5.87953 6.08496 6.41054 6.60109 6.64627 7.13193 7.31145 7.57254 8.11936 8.71445 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007110 B = 0.003897 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.231858 B = 7182.462881 C =10132.410964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.113 0.887 5 C 0.124 3.876 6 N -0.706 5.706 7 C 0.505 3.495 8 O -0.591 6.591 9 C -0.088 4.088 10 C -0.105 4.105 11 C -0.114 4.114 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.106 4.106 15 C -0.102 4.102 16 N -0.662 5.662 17 C 0.064 3.936 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.415 0.585 37 H 0.119 0.881 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.042 0.958 50 H 0.352 0.648 51 H 0.064 0.936 52 H 0.087 0.913 53 H 0.393 0.607 54 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 5.725 18.471 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.026 4.026 4 H 0.131 0.869 5 C 0.000 4.000 6 N -0.357 5.357 7 C 0.293 3.707 8 O -0.472 6.472 9 C -0.109 4.109 10 C -0.143 4.143 11 C -0.151 4.151 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.143 4.143 15 C -0.140 4.140 16 N -0.295 5.295 17 C -0.069 4.069 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.564 5.564 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.252 0.748 37 H 0.137 0.863 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.173 0.827 51 H 0.082 0.918 52 H 0.105 0.895 53 H 0.226 0.774 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.177 6.128 18.493 19.924 hybrid contribution -0.645 -1.038 -1.464 1.907 sum 3.531 5.090 17.029 18.120 Atomic orbital electron populations 1.21738 0.94697 1.02327 1.02001 1.22174 0.97128 0.97017 1.03312 1.21956 0.93444 0.94443 0.92718 0.86883 1.21440 0.93569 0.83585 1.01417 1.45869 1.07296 1.10381 1.72190 1.21327 0.82247 0.92141 0.75000 1.90648 1.57042 1.48007 1.51496 1.20281 0.98198 0.92139 1.00276 1.21325 1.00922 0.97237 0.94863 1.21310 0.97570 0.93532 1.02715 1.21922 0.93707 0.99750 1.00082 1.21368 0.98183 0.99719 0.96624 1.21277 1.01455 0.94834 0.96718 1.20286 0.93676 0.98081 1.01944 1.60153 1.17938 1.51646 0.99774 1.21495 1.01228 0.95276 0.88892 1.20797 0.83398 0.87522 0.85355 1.90483 1.46035 1.26338 1.87196 1.41954 1.50644 1.23218 1.05525 1.19627 1.35195 1.06134 0.85092 0.90081 1.26030 0.96108 0.97251 1.01919 1.69675 1.38173 1.20729 1.27834 0.85019 0.78739 0.78030 0.76763 1.19701 1.19719 1.19478 0.93991 0.91965 0.91062 0.92422 0.89510 0.90349 0.93570 0.74770 0.86308 0.93153 0.92215 0.89911 0.92353 0.90604 0.93426 0.91225 0.93906 0.90007 0.90727 0.92091 0.93897 0.82737 0.91815 0.89465 0.77431 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.71 71.98 0.70 -1.81 16 2 C -0.16 -2.77 5.17 30.59 0.16 -2.61 16 3 C 0.08 1.67 2.70 44.92 0.12 1.79 16 4 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 5 C 0.12 2.90 4.70 86.38 0.41 3.30 16 6 N -0.71 -17.39 5.09 -463.07 -2.36 -19.75 16 7 C 0.51 14.18 7.10 87.66 0.62 14.80 16 8 O -0.59 -21.03 15.78 -3.02 -0.05 -21.08 16 9 C -0.09 -1.94 2.03 -13.40 -0.03 -1.97 16 10 C -0.11 -2.57 4.95 30.22 0.15 -2.42 16 11 C -0.11 -2.22 5.32 30.16 0.16 -2.06 16 12 C -0.12 -2.14 5.85 31.31 0.18 -1.96 16 13 C -0.12 -2.21 5.31 30.14 0.16 -2.05 16 14 C -0.11 -1.74 5.61 30.20 0.17 -1.57 16 15 C -0.10 -2.26 3.83 28.74 0.11 -2.15 16 16 N -0.66 -18.01 5.35 -495.55 -2.65 -20.67 16 17 C 0.06 2.13 5.34 85.55 0.46 2.59 16 18 C 0.44 20.59 7.83 87.66 0.69 21.27 16 19 O -0.61 -32.56 15.90 -3.08 -0.05 -32.61 16 20 N -0.58 -29.72 5.29 -306.98 -1.62 -31.34 16 21 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 25 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H 0.04 0.83 6.85 -2.39 -0.02 0.82 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.19 6.23 -2.39 -0.01 1.18 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.29 6.57 -2.39 -0.02 1.27 16 36 H 0.42 9.54 7.40 -92.70 -0.69 8.85 16 37 H 0.12 1.98 7.47 -2.39 -0.02 1.96 16 38 H 0.05 1.44 6.97 -2.38 -0.02 1.42 16 39 H 0.06 1.66 7.03 -2.38 -0.02 1.64 16 40 H 0.08 1.25 6.63 -2.39 -0.02 1.24 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.04 0.95 6.62 -2.39 -0.02 0.93 16 46 H 0.08 1.11 6.98 -2.39 -0.02 1.09 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 1.40 7.89 -2.39 -0.02 1.38 16 49 H 0.04 1.17 7.37 -2.39 -0.02 1.15 16 50 H 0.35 9.83 7.23 -89.70 -0.65 9.18 16 51 H 0.06 1.95 6.49 -2.39 -0.02 1.93 16 52 H 0.09 2.97 6.15 -2.39 -0.01 2.95 16 53 H 0.39 19.71 7.90 -92.71 -0.73 18.98 16 54 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -69.50 410.64 -0.23 -69.73 By element: Atomic # 1 Polarization: 55.15 SS G_CDS: -1.14 Total: 54.00 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 5.34 Total: 6.91 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -6.35 Total: -122.16 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.10 Total: -53.68 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.50 -0.23 -69.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753466668.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.581 kcal (2) G-P(sol) polarization free energy of solvation -69.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds