Wall clock time and date at job start Wed Apr 1 2020 00:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46757 * 2 1 4 4 N 1.46898 * 109.46853 * 119.99673 * 2 1 3 5 5 C 1.46843 * 111.00154 * 295.18862 * 4 2 1 6 6 C 1.53039 * 109.52412 * 174.16544 * 5 4 2 7 7 C 1.53111 * 109.28113 * 59.17693 * 6 5 4 8 8 C 1.53120 * 109.16104 * 302.34817 * 7 6 5 9 9 C 1.46846 * 110.99878 * 170.97490 * 4 2 1 10 10 H 1.09005 * 109.46059 * 65.83255 * 9 4 2 11 11 C 1.50702 * 109.46547 * 305.85872 * 9 4 2 12 12 O 1.21282 * 119.99776 * 332.93870 * 11 9 4 13 13 N 1.34769 * 119.99957 * 152.93832 * 11 9 4 14 14 C 1.47149 * 120.98471 * 5.18331 * 13 11 9 15 15 C 1.53711 * 108.16766 * 129.43166 * 14 13 11 16 16 O 1.42964 * 109.14700 * 52.53371 * 15 14 13 17 17 C 1.42967 * 114.16511 * 297.29083 * 16 15 14 18 18 H 1.08998 * 109.51475 * 302.65500 * 17 16 15 19 19 C 1.53002 * 109.55231 * 182.52913 * 17 16 15 20 20 N 1.46505 * 109.46929 * 65.23444 * 19 17 16 21 21 C 1.36933 * 119.99662 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00742 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99596 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00225 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99723 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47244 * 89.99860 * 25 23 21 27 27 H 1.48504 * 109.47028 * 209.99507 * 25 23 21 28 28 H 1.48499 * 109.47565 * 329.99614 * 25 23 21 29 29 C 1.47153 * 120.97912 * 185.45923 * 13 11 9 30 30 H 1.09001 * 109.47473 * 300.00364 * 1 2 3 31 31 H 1.09005 * 109.47144 * 60.00215 * 1 2 3 32 32 H 1.09004 * 109.46987 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46826 * 239.99919 * 2 1 3 34 34 H 1.08996 * 109.46984 * 299.99649 * 3 2 1 35 35 H 1.09000 * 109.47127 * 60.00065 * 3 2 1 36 36 H 1.08993 * 109.46680 * 180.02562 * 3 2 1 37 37 H 1.09005 * 109.46229 * 294.17394 * 5 4 2 38 38 H 1.08998 * 109.46854 * 54.14265 * 5 4 2 39 39 H 1.08999 * 109.49876 * 299.23034 * 6 5 4 40 40 H 1.09006 * 109.50102 * 179.12122 * 6 5 4 41 41 H 1.09000 * 109.52424 * 182.44613 * 7 6 5 42 42 H 1.09004 * 109.52610 * 62.25025 * 7 6 5 43 43 H 1.09009 * 109.50095 * 297.71183 * 8 7 6 44 44 H 1.09001 * 109.50536 * 177.59540 * 8 7 6 45 45 H 1.09007 * 109.67623 * 249.20895 * 14 13 11 46 46 H 1.08998 * 109.68160 * 9.75906 * 14 13 11 47 47 H 1.09004 * 109.65327 * 292.57270 * 15 14 13 48 48 H 1.08999 * 109.49183 * 172.40013 * 15 14 13 49 49 H 1.08997 * 109.46996 * 185.23052 * 19 17 16 50 50 H 1.08999 * 109.47092 * 305.23019 * 19 17 16 51 51 H 0.96999 * 119.99865 * 359.97438 * 20 19 17 52 52 H 0.97001 * 120.00375 * 180.02562 * 24 23 21 53 53 H 1.08993 * 109.68421 * 350.23722 * 29 13 11 54 54 H 1.09000 * 109.68199 * 110.75314 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.6450 0.0367 2.4178 6 6 2.0422 -0.7836 3.6473 7 6 3.5528 -1.0319 3.6229 8 6 3.9233 -1.7493 2.3218 9 6 3.4716 -0.9011 1.1308 10 1 3.9788 0.0633 1.1588 11 6 3.8166 -1.6127 -0.1520 12 8 3.0000 -2.3353 -0.6831 13 7 5.0324 -1.4461 -0.7091 14 6 6.0776 -0.6664 -0.0273 15 6 7.3621 -1.5101 0.0029 16 8 7.6637 -1.9526 -1.3227 17 6 6.6700 -2.8063 -1.8951 18 1 6.5232 -3.6753 -1.2537 19 6 7.1263 -3.2656 -3.2813 20 7 8.3202 -4.1044 -3.1493 21 6 8.9119 -4.6335 -4.2651 22 1 8.4984 -4.4329 -5.2424 23 6 10.0435 -5.4278 -4.1401 24 7 10.5479 -5.6719 -2.9492 25 14 10.8503 -6.1501 -5.6621 26 1 11.8742 -5.2049 -6.1756 27 1 11.4981 -7.4403 -5.3140 28 1 9.8203 -6.3796 -6.7069 29 6 5.3519 -2.0336 -2.0199 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4426 -0.0005 37 1 2.1608 0.9967 2.4397 38 1 0.5678 0.2031 2.4248 39 1 1.5161 -1.7381 3.6333 40 1 1.7780 -0.2351 4.5515 41 1 3.8338 -1.6525 4.4737 42 1 4.0796 -0.0790 3.6761 43 1 3.4269 -2.7191 2.2870 44 1 5.0032 -1.8908 2.2791 45 1 6.2570 0.2612 -0.5711 46 1 5.7615 -0.4403 0.9910 47 1 7.2178 -2.3745 0.6512 48 1 8.1860 -0.9049 0.3810 49 1 6.3296 -3.8396 -3.7544 50 1 7.3598 -2.3949 -3.8939 51 1 8.6919 -4.2843 -2.2716 52 1 11.3388 -6.2267 -2.8618 53 1 4.5551 -2.7132 -2.3217 54 1 5.4589 -1.2414 -2.7610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755009298.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:10 Heat of formation + Delta-G solvation = -79.976671 kcal Electronic energy + Delta-G solvation = -31758.765705 eV Core-core repulsion = 27730.054060 eV Total energy + Delta-G solvation = -4028.711645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.01130 -40.37628 -38.93259 -36.73192 -36.19993 -35.66412 -33.98930 -32.58114 -31.66137 -31.20222 -29.32689 -28.15416 -27.53380 -25.60730 -24.98316 -24.70271 -23.75251 -22.33876 -21.57727 -20.83591 -19.69055 -19.25864 -18.44943 -17.85298 -17.39738 -16.94476 -16.71484 -16.41305 -15.99714 -15.90651 -15.81849 -15.39174 -15.28842 -15.03628 -14.99992 -14.63652 -14.51877 -14.29108 -14.19092 -13.98482 -13.78849 -13.46875 -13.38421 -13.04241 -12.89082 -12.78453 -12.70500 -12.66884 -12.44326 -12.28324 -12.09505 -12.07800 -12.00283 -11.88606 -11.66920 -11.60763 -11.52412 -11.23616 -11.15653 -10.97285 -10.60761 -9.64874 -9.20013 -9.02776 -7.95123 -5.24968 1.45801 1.47140 1.49746 1.58066 1.68335 2.55663 2.72241 2.82467 3.29199 3.38712 3.52940 3.77383 3.84630 3.85997 3.90070 3.94196 4.02928 4.04323 4.11804 4.14724 4.26194 4.27500 4.29601 4.35845 4.38820 4.48247 4.52513 4.62167 4.66267 4.71423 4.73347 4.75813 4.78622 4.82167 4.89772 4.92599 4.97368 5.02278 5.05964 5.09523 5.16768 5.21560 5.24909 5.29305 5.36365 5.47300 5.47753 5.98576 6.17684 6.20626 6.25999 6.30219 7.05313 7.32237 8.05342 8.30560 9.28682 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.002409 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.526070 B =11619.209476 C =12169.945083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 C -0.179 4.179 4 N -0.527 5.527 5 C 0.051 3.949 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.110 4.110 9 C 0.079 3.921 10 H 0.083 0.917 11 C 0.517 3.483 12 O -0.562 6.562 13 N -0.615 5.615 14 C 0.074 3.926 15 C 0.039 3.961 16 O -0.386 6.386 17 C 0.090 3.910 18 H 0.045 0.955 19 C 0.161 3.839 20 N -0.741 5.741 21 C -0.248 4.248 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.978 3.022 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.269 1.269 29 C 0.097 3.903 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.122 0.878 47 H 0.050 0.950 48 H 0.130 0.870 49 H 0.041 0.959 50 H 0.032 0.968 51 H 0.375 0.625 52 H 0.252 0.748 53 H 0.088 0.912 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.927 19.422 16.361 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 C -0.238 4.238 4 N -0.253 5.253 5 C -0.075 4.075 6 C -0.156 4.156 7 C -0.150 4.150 8 C -0.148 4.148 9 C -0.032 4.032 10 H 0.100 0.900 11 C 0.306 3.694 12 O -0.439 6.439 13 N -0.350 5.350 14 C -0.048 4.048 15 C -0.038 4.038 16 O -0.305 6.305 17 C 0.031 3.969 18 H 0.063 0.937 19 C 0.034 3.966 20 N -0.383 5.383 21 C -0.380 4.380 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.806 3.194 26 H -0.212 1.212 27 H -0.221 1.221 28 H -0.193 1.193 29 C -0.027 4.027 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.140 0.860 47 H 0.069 0.931 48 H 0.148 0.852 49 H 0.059 0.941 50 H 0.050 0.950 51 H 0.206 0.794 52 H 0.060 0.940 53 H 0.106 0.894 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.440 18.602 15.820 31.213 hybrid contribution 1.016 -0.324 -0.700 1.275 sum -18.424 18.278 15.120 30.036 Atomic orbital electron populations 1.21745 0.93229 1.01714 1.02426 1.21798 0.96951 0.92733 0.92769 1.22424 1.00951 0.97009 1.03417 1.61870 1.10201 1.50162 1.03054 1.22285 1.01648 0.95280 0.88313 1.21636 0.95966 1.00591 0.97393 1.21565 0.96464 1.01131 0.95870 1.21618 1.01124 0.98655 0.93401 1.21601 0.90855 0.98827 0.91942 0.89982 1.21112 0.80653 0.81241 0.86369 1.90680 1.49382 1.39270 1.64616 1.48293 1.13205 1.53166 1.20313 1.22806 0.87031 0.94935 0.99998 1.23297 0.98281 0.98394 0.83876 1.88097 1.45174 1.66611 1.30625 1.22420 0.87759 0.91615 0.95126 0.93739 1.20751 0.89285 0.93349 0.93238 1.42421 1.30711 1.58923 1.06267 1.19662 1.06963 1.23103 0.88236 0.90417 1.25630 0.99569 1.01983 0.99700 1.69836 1.25069 1.43924 1.23205 0.85079 0.78374 0.77145 0.78774 1.21221 1.22072 1.19330 1.22039 0.96522 0.98731 0.85417 0.91106 0.91650 0.93539 0.92297 0.91613 0.90633 0.93163 0.93135 0.89519 0.92472 0.89229 0.90328 0.90209 0.92743 0.90220 0.88893 0.86016 0.93118 0.85229 0.94094 0.95043 0.79359 0.93955 0.89382 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.10 71.98 0.65 -1.54 16 2 C 0.07 1.25 2.55 44.92 0.11 1.37 16 3 C -0.18 -2.48 8.46 71.98 0.61 -1.87 16 4 N -0.53 -9.90 4.21 -850.39 -3.58 -13.47 16 5 C 0.05 0.64 4.56 86.33 0.39 1.03 16 6 C -0.12 -1.29 6.09 30.64 0.19 -1.10 16 7 C -0.11 -1.18 6.00 30.67 0.18 -1.00 16 8 C -0.11 -1.79 5.15 30.65 0.16 -1.63 16 9 C 0.08 1.46 1.03 44.19 0.05 1.51 16 10 H 0.08 1.16 5.42 -2.38 -0.01 1.15 16 11 C 0.52 13.59 5.75 87.66 0.50 14.10 16 12 O -0.56 -19.68 14.60 -3.04 -0.04 -19.72 16 13 N -0.62 -15.15 3.01 -816.55 -2.46 -17.61 16 14 C 0.07 1.31 6.28 86.49 0.54 1.85 16 15 C 0.04 0.88 7.00 72.22 0.51 1.39 16 16 O -0.39 -13.35 10.34 -148.98 -1.54 -14.89 16 17 C 0.09 3.18 2.81 30.69 0.09 3.26 16 18 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 19 C 0.16 6.83 5.93 86.38 0.51 7.34 16 20 N -0.74 -39.95 5.55 -343.45 -1.91 -41.86 16 21 C -0.25 -14.41 9.99 84.04 0.84 -13.57 16 22 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 24 N -0.97 -61.18 13.06 21.65 0.28 -60.90 16 25 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 29 C 0.10 2.84 5.94 86.35 0.51 3.35 16 30 H 0.07 0.89 6.40 -2.39 -0.02 0.88 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.55 5.69 -2.39 -0.01 1.54 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.81 6.47 -2.39 -0.02 0.79 16 36 H 0.05 0.71 6.78 -2.39 -0.02 0.69 16 37 H 0.05 0.50 6.58 -2.38 -0.02 0.48 16 38 H 0.09 0.99 6.17 -2.39 -0.01 0.97 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.08 1.15 7.23 -2.39 -0.02 1.13 16 45 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.12 1.37 4.95 -2.39 -0.01 1.36 16 47 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.37 21.69 7.67 -92.71 -0.71 20.97 16 52 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 53 H 0.09 2.83 7.06 -2.39 -0.02 2.82 16 54 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -75.86 402.48 -0.73 -76.58 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.18 Total: 32.20 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 6.32 Total: 10.40 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -7.66 Total: -133.85 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.58 Total: -34.61 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -75.86 -0.73 -76.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755009298.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.392 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds