Wall clock time and date at job start Tue Mar 31 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47353 * 2 1 4 4 H 1.08999 * 109.47330 * 305.00199 * 3 2 1 5 5 C 1.53004 * 109.47137 * 184.99819 * 3 2 1 6 6 C 1.52999 * 109.47059 * 65.00047 * 3 2 1 7 7 H 1.09003 * 109.48797 * 298.94185 * 6 3 2 8 8 C 1.53050 * 109.48903 * 58.98132 * 6 3 2 9 9 N 1.46959 * 109.36720 * 178.36818 * 8 6 3 10 10 C 1.46900 * 111.00304 * 176.81042 * 9 8 6 11 11 C 1.52999 * 109.47416 * 283.95679 * 10 9 8 12 12 H 1.08995 * 109.47279 * 58.85559 * 11 10 9 13 13 O 1.42902 * 109.47059 * 298.85925 * 11 10 9 14 14 C 1.53002 * 109.47242 * 178.85591 * 11 10 9 15 15 C 1.47198 * 109.47090 * 184.99855 * 14 11 10 16 16 N 7.28563 * 82.33991 * 113.72410 * 2 1 3 17 17 C 1.46948 * 110.88007 * 300.68190 * 9 8 6 18 18 C 1.53050 * 109.36661 * 59.32059 * 17 9 8 19 19 N 1.46952 * 109.49306 * 178.87532 * 6 3 2 20 20 C 1.46900 * 111.00078 * 56.84047 * 19 6 3 21 21 C 1.52998 * 109.46782 * 75.43740 * 20 19 6 22 22 H 1.09002 * 109.47296 * 55.38328 * 21 20 19 23 23 O 1.42898 * 109.47468 * 295.38496 * 21 20 19 24 24 C 1.50704 * 109.47156 * 175.38407 * 21 20 19 25 25 H 1.08001 * 119.99769 * 359.97438 * 24 21 20 26 26 C 1.37873 * 120.00090 * 180.02562 * 24 21 20 27 27 N 1.31516 * 120.00031 * 179.97438 * 26 24 21 28 28 Si 1.86799 * 120.00193 * 0.02562 * 26 24 21 29 29 H 1.48497 * 109.47425 * 89.99773 * 28 26 24 30 30 H 1.48497 * 109.47155 * 210.00523 * 28 26 24 31 31 H 1.48509 * 109.47073 * 329.99741 * 28 26 24 32 32 H 1.08995 * 109.47224 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46719 * 59.99681 * 1 2 3 34 34 H 1.09000 * 109.46803 * 300.00203 * 1 2 3 35 35 H 1.08993 * 109.46708 * 120.00302 * 2 1 3 36 36 H 1.09003 * 109.46550 * 240.00257 * 2 1 3 37 37 H 1.09004 * 109.46763 * 60.00641 * 5 3 2 38 38 H 1.08995 * 109.46993 * 180.02562 * 5 3 2 39 39 H 1.08999 * 109.47320 * 300.00385 * 5 3 2 40 40 H 1.09001 * 109.49286 * 298.33600 * 8 6 3 41 41 H 1.09001 * 109.48795 * 58.38037 * 8 6 3 42 42 H 1.09008 * 109.46762 * 43.95324 * 10 9 8 43 43 H 1.08992 * 109.47296 * 163.95358 * 10 9 8 44 44 H 0.96706 * 113.99478 * 299.99677 * 13 11 10 45 45 H 1.08994 * 109.47110 * 304.99710 * 14 11 10 46 46 H 1.09001 * 109.46660 * 65.00058 * 14 11 10 47 47 H 1.09000 * 109.48949 * 179.28497 * 17 9 8 48 48 H 1.08998 * 109.48936 * 299.35090 * 17 9 8 49 49 H 1.08997 * 109.49056 * 61.56610 * 18 17 9 50 50 H 1.09003 * 109.48920 * 181.60969 * 18 17 9 51 51 H 1.09004 * 109.47268 * 195.43691 * 20 19 6 52 52 H 1.08996 * 109.46924 * 315.44045 * 20 19 6 53 53 H 0.96707 * 113.99652 * 300.00418 * 23 21 20 54 54 H 0.96998 * 120.00106 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 6 1.6353 2.1265 1.3074 7 1 0.5484 2.1421 1.3883 8 6 2.2244 1.3552 2.4908 9 7 1.8668 2.0364 3.7430 10 6 2.3507 1.2842 4.9083 11 6 1.4478 0.0716 5.1435 12 1 1.4499 -0.5606 4.2556 13 8 0.1154 0.5143 5.4098 14 6 1.9685 -0.7276 6.3398 15 6 1.1729 -1.9566 6.4925 16 7 0.5589 -2.9051 6.6104 17 6 2.3796 3.4134 3.7550 18 6 1.7906 4.1847 2.5716 19 7 2.1481 3.5036 1.3194 20 6 1.6643 4.2558 0.1541 21 6 0.1968 4.6340 0.3648 22 1 0.0935 5.1810 1.3020 23 8 -0.5984 3.4478 0.4156 24 6 -0.2673 5.5014 -0.7769 25 1 0.4162 5.7576 -1.5729 26 6 -1.5641 5.9687 -0.8047 27 7 -1.9690 6.7261 -1.8007 28 14 -2.7457 5.5274 0.5732 29 1 -2.6624 6.5526 1.6442 30 1 -4.1311 5.4792 0.0407 31 1 -2.3830 4.1993 1.1299 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.8933 -0.5138 -0.8901 37 1 3.8532 0.9569 -1.0571 38 1 3.9283 2.4718 -0.1252 39 1 3.9995 0.9051 0.7161 40 1 1.8229 0.3419 2.5007 41 1 3.3095 1.3155 2.3951 42 1 3.3711 0.9473 4.7251 43 1 2.3327 1.9267 5.7885 44 1 0.0382 1.0829 6.1882 45 1 3.0135 -0.9895 6.1747 46 1 1.8833 -0.1249 7.2440 47 1 2.0913 3.9007 4.6864 48 1 3.4665 3.3974 3.6739 49 1 0.7055 4.2242 2.6671 50 1 2.1918 5.1982 2.5621 51 1 2.2591 5.1612 0.0335 52 1 1.7557 3.6391 -0.7399 53 1 -0.5546 2.9103 -0.3872 54 1 -2.8814 7.0546 -1.8205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771943558.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:56 Heat of formation + Delta-G solvation = -87.815628 kcal Electronic energy + Delta-G solvation = -32649.958568 eV Core-core repulsion = 28620.907000 eV Total energy + Delta-G solvation = -4029.051568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18927 -39.27261 -37.89023 -37.23852 -36.70474 -35.26665 -34.40568 -32.55326 -31.57222 -30.78949 -29.97417 -28.77446 -26.55613 -25.32889 -24.90850 -23.79823 -22.71842 -22.01207 -21.40907 -19.45649 -19.18176 -18.92433 -17.31970 -16.96249 -16.83629 -16.64209 -16.59525 -16.16984 -15.98782 -15.76823 -15.56574 -15.35012 -14.93214 -14.84185 -14.59566 -14.45517 -14.22342 -14.10726 -14.05930 -13.61996 -13.51938 -13.30562 -13.13551 -13.00987 -12.79244 -12.72926 -12.58899 -12.43104 -12.33283 -12.29412 -12.15880 -11.98482 -11.81368 -11.74323 -11.51430 -11.29603 -11.18074 -11.03550 -10.91243 -10.82985 -10.70978 -10.39896 -9.02105 -8.66333 -8.34901 -6.47766 1.35977 1.42675 1.72817 1.81409 1.90037 2.41828 2.90689 3.02903 3.18506 3.24139 3.76877 3.85507 3.92977 4.02093 4.12145 4.14795 4.22302 4.30058 4.36417 4.40162 4.46806 4.51526 4.54599 4.59400 4.64052 4.70677 4.75661 4.82097 4.84549 4.87492 4.90716 4.98000 5.03028 5.08763 5.16455 5.18021 5.19970 5.22305 5.27902 5.35727 5.44004 5.49527 5.50443 5.59130 5.62441 5.74308 6.06421 6.20037 6.23249 6.42170 6.47753 6.66197 6.69724 7.08830 7.15161 7.33919 8.79065 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.003673 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.994030 B = 7620.522834 C = 8179.633118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.086 4.086 4 H 0.053 0.947 5 C -0.130 4.130 6 C 0.077 3.923 7 H 0.064 0.936 8 C 0.071 3.929 9 N -0.547 5.547 10 C 0.027 3.973 11 C 0.120 3.880 12 H 0.083 0.917 13 O -0.572 6.572 14 C -0.051 4.051 15 C 0.237 3.763 16 N -0.511 5.511 17 C 0.074 3.926 18 C 0.047 3.953 19 N -0.520 5.520 20 C 0.046 3.954 21 C 0.176 3.824 22 H 0.050 0.950 23 O -0.570 6.570 24 C -0.559 4.559 25 H 0.037 0.963 26 C 0.030 3.970 27 N -0.941 5.941 28 Si 0.935 3.065 29 H -0.288 1.288 30 H -0.302 1.302 31 H -0.207 1.207 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.387 0.613 45 H 0.154 0.846 46 H 0.148 0.852 47 H 0.091 0.909 48 H 0.045 0.955 49 H 0.023 0.977 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.073 0.927 53 H 0.359 0.641 54 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.375 -13.753 16.426 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.105 4.105 4 H 0.071 0.929 5 C -0.187 4.187 6 C -0.031 4.031 7 H 0.082 0.918 8 C -0.057 4.057 9 N -0.271 5.271 10 C -0.101 4.101 11 C 0.059 3.941 12 H 0.101 0.899 13 O -0.379 6.379 14 C -0.091 4.091 15 C -0.080 4.080 16 N -0.190 5.190 17 C -0.054 4.054 18 C -0.082 4.082 19 N -0.243 5.243 20 C -0.082 4.082 21 C 0.117 3.883 22 H 0.068 0.932 23 O -0.377 6.377 24 C -0.597 4.597 25 H 0.055 0.945 26 C -0.169 4.169 27 N -0.580 5.580 28 Si 0.760 3.240 29 H -0.214 1.214 30 H -0.230 1.230 31 H -0.128 1.128 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.236 0.764 45 H 0.171 0.829 46 H 0.166 0.834 47 H 0.109 0.891 48 H 0.064 0.936 49 H 0.041 0.959 50 H 0.089 0.911 51 H 0.079 0.921 52 H 0.091 0.909 53 H 0.206 0.794 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.100 -15.217 16.627 26.586 hybrid contribution -0.693 1.179 -0.498 1.456 sum 13.406 -14.038 16.129 25.238 Atomic orbital electron populations 1.21795 0.96543 1.01208 1.01470 1.21548 0.95244 0.95485 1.02366 1.21206 0.96976 0.95835 0.96485 0.92882 1.21678 0.94296 1.01685 1.01070 1.21907 0.99290 0.87497 0.94407 0.91839 1.22242 0.98164 0.97079 0.88209 1.61881 1.60556 1.02191 1.02509 1.22838 0.97228 0.95641 0.94353 1.21813 0.82602 0.93677 0.96027 0.89870 1.86698 1.27780 1.70768 1.52655 1.20354 0.99398 0.86736 1.02596 1.29775 0.92538 0.94312 0.91342 1.81259 1.11895 1.14897 1.10903 1.22049 0.97294 0.88578 0.97502 1.22205 0.98196 0.97688 0.90112 1.62580 1.57844 1.02383 1.01467 1.22562 0.94070 0.97709 0.93893 1.20201 0.89394 0.83638 0.95092 0.93226 1.86645 1.71420 1.37204 1.42406 1.21883 0.97192 1.31900 1.08729 0.94517 1.25803 1.00327 0.93178 0.97629 1.70090 1.18486 1.35845 1.33627 0.86044 0.76543 0.81857 0.79517 1.21446 1.22960 1.12846 0.92486 0.93575 0.93484 0.91024 0.91388 0.93129 0.93132 0.91952 0.90378 0.93611 0.91363 0.87768 0.76390 0.82888 0.83390 0.89101 0.93642 0.95901 0.91125 0.92082 0.90859 0.79389 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.67 71.98 0.70 -3.02 16 2 C -0.11 -2.29 5.17 30.59 0.16 -2.13 16 3 C -0.09 -2.11 1.78 -10.79 -0.02 -2.13 16 4 H 0.05 1.56 6.09 -2.39 -0.01 1.55 16 5 C -0.13 -2.81 8.70 71.98 0.63 -2.19 16 6 C 0.08 2.08 1.11 44.92 0.05 2.13 16 7 H 0.06 2.15 4.03 -2.39 -0.01 2.14 16 8 C 0.07 1.46 4.01 86.31 0.35 1.81 16 9 N -0.55 -10.32 4.53 -895.74 -4.05 -14.37 16 10 C 0.03 0.24 4.66 86.30 0.40 0.65 16 11 C 0.12 1.22 3.01 30.59 0.09 1.31 16 12 H 0.08 1.18 6.86 -2.39 -0.02 1.17 16 13 O -0.57 -9.58 12.96 -148.98 -1.93 -11.51 16 14 C -0.05 -0.17 5.39 28.79 0.16 -0.02 16 15 C 0.24 3.61 15.19 89.44 1.36 4.97 16 16 N -0.51 -12.48 18.54 20.01 0.37 -12.11 16 17 C 0.07 1.47 5.56 86.31 0.48 1.95 16 18 C 0.05 1.34 4.75 86.31 0.41 1.75 16 19 N -0.52 -15.47 3.92 -870.50 -3.41 -18.88 16 20 C 0.05 1.70 5.04 86.30 0.44 2.13 16 21 C 0.18 7.76 1.75 29.85 0.05 7.81 16 22 H 0.05 2.31 5.52 -2.39 -0.01 2.30 16 23 O -0.57 -24.14 7.22 -148.98 -1.08 -25.22 16 24 C -0.56 -30.91 9.34 25.60 0.24 -30.68 16 25 H 0.04 2.24 7.99 -2.91 -0.02 2.21 16 26 C 0.03 1.74 5.47 84.65 0.46 2.21 16 27 N -0.94 -58.77 13.96 21.45 0.30 -58.48 16 28 Si 0.94 45.99 26.99 68.60 1.85 47.84 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 31 H -0.21 -9.76 5.31 99.48 0.53 -9.23 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.32 6.59 -2.39 -0.02 1.31 16 35 H 0.07 1.33 6.18 -2.39 -0.01 1.31 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 1.26 7.55 -2.39 -0.02 1.24 16 39 H 0.06 1.15 6.42 -2.39 -0.02 1.14 16 40 H 0.08 1.55 5.04 -2.39 -0.01 1.54 16 41 H 0.05 0.88 6.37 -2.39 -0.02 0.86 16 42 H 0.07 0.38 7.99 -2.38 -0.02 0.36 16 43 H 0.10 0.47 7.84 -2.39 -0.02 0.45 16 44 H 0.39 3.42 9.05 -74.05 -0.67 2.75 16 45 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.09 1.48 8.00 -2.39 -0.02 1.47 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.02 0.81 6.31 -2.39 -0.02 0.80 16 50 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 52 H 0.07 2.71 5.53 -2.39 -0.01 2.70 16 53 H 0.36 14.28 9.02 -74.05 -0.67 13.61 16 54 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -77.75 402.17 -2.60 -80.35 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.59 Total: 25.83 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.94 Total: -13.45 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -6.80 Total: -103.84 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -3.01 Total: -36.73 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.85 Total: 47.84 kcal Total: -77.75 -2.60 -80.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771943558.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.464 kcal (2) G-P(sol) polarization free energy of solvation -77.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds