Wall clock time and date at job start Wed Apr 1 2020 00:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.58775 * 2 1 4 4 C 1.53192 * 109.58369 * 120.42920 * 2 1 3 5 5 C 1.53045 * 109.31045 * 174.41789 * 4 2 1 6 6 C 1.53040 * 109.53811 * 298.63636 * 5 4 2 7 7 H 1.09006 * 109.52502 * 181.33306 * 6 5 4 8 8 N 1.46501 * 109.49569 * 301.40774 * 6 5 4 9 9 C 1.34779 * 120.00131 * 204.83545 * 8 6 5 10 10 O 1.21280 * 119.99534 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99721 * 180.02562 * 9 8 6 12 12 C 1.53002 * 109.46678 * 180.02562 * 11 9 8 13 13 N 1.46496 * 109.46904 * 180.02562 * 12 11 9 14 14 C 1.34773 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00664 * 180.27262 * 14 13 12 17 17 C 1.53001 * 109.47433 * 179.72444 * 16 14 13 18 18 C 1.53002 * 109.46766 * 299.72727 * 16 14 13 19 19 C 1.53000 * 109.46717 * 59.72299 * 16 14 13 20 20 C 1.53184 * 109.31481 * 61.36207 * 6 5 4 21 21 N 1.46922 * 108.77947 * 305.36468 * 20 6 5 22 22 C 1.36935 * 120.63753 * 233.58599 * 21 20 6 23 23 H 1.07996 * 120.00158 * 150.15544 * 22 21 20 24 24 C 1.38811 * 119.99765 * 330.16541 * 22 21 20 25 25 N 1.31622 * 119.99697 * 344.49597 * 24 22 21 26 26 Si 1.86794 * 120.00123 * 164.50590 * 24 22 21 27 27 H 1.48497 * 109.47528 * 59.99544 * 26 24 22 28 28 H 1.48509 * 109.47189 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47162 * 299.99476 * 26 24 22 30 30 H 1.09000 * 109.47633 * 180.28465 * 1 2 3 31 31 H 1.09008 * 109.46726 * 300.28675 * 1 2 3 32 32 H 1.09002 * 109.47310 * 60.27777 * 1 2 3 33 33 H 1.09000 * 109.49882 * 294.36457 * 4 2 1 34 34 H 1.08999 * 109.49966 * 54.43966 * 4 2 1 35 35 H 1.08998 * 109.46021 * 178.61353 * 5 4 2 36 36 H 1.09000 * 109.45740 * 58.65410 * 5 4 2 37 37 H 0.96999 * 119.99637 * 24.84539 * 8 6 5 38 38 H 1.09002 * 109.46760 * 60.00559 * 11 9 8 39 39 H 1.08997 * 109.47617 * 300.00399 * 11 9 8 40 40 H 1.08999 * 109.46858 * 60.00302 * 12 11 9 41 41 H 1.08997 * 109.47228 * 300.00399 * 12 11 9 42 42 H 0.97008 * 120.00292 * 359.97438 * 13 12 11 43 43 H 1.08998 * 109.47025 * 60.00439 * 17 16 14 44 44 H 1.09002 * 109.46707 * 179.97438 * 17 16 14 45 45 H 1.09001 * 109.46969 * 299.99913 * 17 16 14 46 46 H 1.09000 * 109.47497 * 59.99871 * 18 16 14 47 47 H 1.09004 * 109.46889 * 180.02562 * 18 16 14 48 48 H 1.09003 * 109.47030 * 299.99443 * 18 16 14 49 49 H 1.08994 * 109.47041 * 60.00135 * 19 16 14 50 50 H 1.09002 * 109.47053 * 180.02562 * 19 16 14 51 51 H 1.09002 * 109.46891 * 299.99857 * 19 16 14 52 52 H 1.09001 * 109.58845 * 65.15492 * 20 6 5 53 53 H 1.09005 * 109.58979 * 185.57949 * 20 6 5 54 54 H 0.97004 * 120.00063 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5675 -0.8496 1.1690 6 6 3.9568 -1.6658 -0.0656 7 1 5.0411 -1.7702 -0.1063 8 7 3.3404 -2.9926 0.0110 9 6 3.8950 -4.0322 -0.6434 10 8 4.9046 -3.8692 -1.2953 11 6 3.2606 -5.3969 -0.5649 12 6 4.0823 -6.3894 -1.3899 13 7 3.4652 -7.7159 -1.3142 14 6 4.0203 -8.7557 -1.9678 15 8 5.0304 -8.5930 -2.6190 16 6 3.3821 -10.1190 -1.8949 17 6 4.2011 -11.1104 -2.7239 18 6 3.3397 -10.5849 -0.4382 19 6 1.9577 -10.0455 -2.4486 20 6 3.4649 -0.9455 -1.3249 21 7 2.0225 -0.6982 -1.1954 22 6 1.1536 -1.1100 -2.1703 23 1 0.1396 -1.3776 -1.9121 24 6 1.5761 -1.1837 -3.4905 25 7 2.6869 -0.5823 -3.8605 26 14 0.5681 -2.1361 -4.7420 27 1 -0.7923 -1.5478 -4.8330 28 1 1.2290 -2.0617 -6.0698 29 1 0.4661 -3.5557 -4.3183 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3634 0.5095 -0.8925 33 1 1.7661 -0.1695 2.1366 34 1 1.6025 -1.7268 1.2894 35 1 3.9378 -1.3476 2.0651 36 1 4.0061 0.1458 1.0994 37 1 2.5331 -3.1228 0.5327 38 1 2.2455 -5.3488 -0.9592 39 1 3.2316 -5.7249 0.4741 40 1 5.0972 -6.4373 -0.9952 41 1 4.1116 -6.0615 -2.4290 42 1 2.6575 -7.8461 -0.7930 43 1 5.2158 -11.1628 -2.3294 44 1 3.7397 -12.0966 -2.6708 45 1 4.2313 -10.7784 -3.7617 46 1 2.7563 -9.8786 0.1524 47 1 2.8786 -11.5712 -0.3855 48 1 4.3545 -10.6373 -0.0437 49 1 1.9880 -9.7135 -3.4862 50 1 1.4960 -11.0314 -2.3955 51 1 1.3743 -9.3392 -1.8579 52 1 3.9902 0.0036 -1.4318 53 1 3.6516 -1.5692 -2.1992 54 1 2.9820 -0.6335 -4.7832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132214597.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:45 Heat of formation + Delta-G solvation = -100.231613 kcal Electronic energy + Delta-G solvation = -31219.119058 eV Core-core repulsion = 27189.529092 eV Total energy + Delta-G solvation = -4029.589965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34122 -40.89435 -39.21491 -36.69404 -36.34302 -35.72051 -34.48286 -32.69454 -31.76625 -31.26161 -28.20609 -28.11076 -27.83295 -26.81708 -25.57180 -23.87654 -23.29141 -22.16175 -21.69952 -20.39734 -20.34586 -18.40194 -18.07551 -17.71370 -17.24157 -17.04059 -16.72244 -16.42635 -16.05722 -15.74139 -15.44547 -15.19459 -15.09436 -14.88523 -14.70654 -14.47721 -14.43430 -14.04649 -14.00134 -13.59355 -13.31620 -13.05476 -13.00956 -12.95473 -12.86645 -12.83815 -12.62859 -12.58465 -12.55742 -12.47064 -12.39767 -12.12577 -12.06710 -11.91279 -11.85506 -11.55361 -11.20056 -11.03678 -10.92624 -10.68713 -10.49913 -10.20675 -9.89152 -8.55524 -7.81101 -5.26830 1.41216 1.43509 1.49852 1.59032 1.75854 1.95844 2.50797 2.59812 3.35157 3.55513 3.65011 3.68394 3.85266 3.92179 3.98667 4.04141 4.11758 4.13628 4.21748 4.27105 4.49551 4.52174 4.68247 4.70257 4.73451 4.76363 4.82486 4.83158 4.85378 4.88532 4.94945 4.96146 4.99093 5.01678 5.07116 5.12613 5.14986 5.21309 5.30197 5.32365 5.35121 5.35590 5.37157 5.60182 5.64028 5.72477 5.75711 5.78458 6.45211 6.50273 6.74771 7.19858 7.22140 7.45173 7.94707 8.46107 9.23976 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.003048 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.386138 B = 9184.659440 C =10257.213610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.008 0.992 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.059 0.941 8 N -0.688 5.688 9 C 0.506 3.494 10 O -0.598 6.598 11 C -0.134 4.134 12 C 0.143 3.857 13 N -0.711 5.711 14 C 0.510 3.490 15 O -0.593 6.593 16 C -0.081 4.081 17 C -0.129 4.129 18 C -0.136 4.136 19 C -0.140 4.140 20 C 0.172 3.828 21 N -0.593 5.593 22 C -0.235 4.235 23 H 0.081 0.919 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.949 3.051 27 H -0.269 1.269 28 H -0.310 1.310 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.411 0.589 38 H 0.117 0.883 39 H 0.144 0.856 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.419 0.581 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.040 0.960 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.042 0.958 50 H 0.093 0.907 51 H 0.076 0.924 52 H -0.010 1.010 53 H 0.044 0.956 54 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -17.359 16.422 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.026 0.974 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.078 0.922 8 N -0.339 5.339 9 C 0.293 3.707 10 O -0.480 6.480 11 C -0.174 4.174 12 C 0.018 3.982 13 N -0.364 5.364 14 C 0.298 3.702 15 O -0.472 6.472 16 C -0.084 4.084 17 C -0.186 4.186 18 C -0.194 4.194 19 C -0.198 4.198 20 C 0.045 3.955 21 N -0.316 5.316 22 C -0.365 4.365 23 H 0.098 0.902 24 C -0.250 4.250 25 N -0.586 5.586 26 Si 0.779 3.221 27 H -0.195 1.195 28 H -0.238 1.238 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.257 0.743 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.112 0.888 51 H 0.095 0.905 52 H 0.008 0.992 53 H 0.062 0.938 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.817 -17.069 15.382 23.477 hybrid contribution -0.291 0.291 -1.538 1.593 sum -5.108 -16.778 13.843 22.343 Atomic orbital electron populations 1.21722 0.94535 1.01584 1.00672 1.20797 0.94287 0.93044 0.87205 0.97434 1.21939 0.94473 1.01327 0.97817 1.21652 0.97477 0.99659 0.95973 1.21412 0.96110 0.82933 0.97383 0.92240 1.45687 1.29789 1.07628 1.50794 1.20969 0.83989 0.87615 0.78172 1.90709 1.28141 1.86184 1.42929 1.21709 1.01011 0.89887 1.04784 1.20714 0.96532 0.81769 0.99205 1.45815 1.30670 1.07761 1.52168 1.21491 0.83653 0.87643 0.77424 1.90700 1.27531 1.85852 1.43162 1.20885 0.97521 0.89914 1.00092 1.21691 0.99411 0.98742 0.98801 1.21889 1.02707 1.03580 0.91192 1.21913 0.92537 1.04675 1.00630 1.20821 0.84337 0.94998 0.95344 1.44245 1.02049 1.65545 1.19811 1.19402 0.95474 1.35516 0.86150 0.90193 1.25774 0.98887 1.01254 0.99110 1.70172 1.26178 1.46168 1.16114 0.85607 0.78659 0.79504 0.78369 1.19499 1.23760 1.20322 0.92490 0.90695 0.94913 0.89277 0.91144 0.89410 0.91481 0.75189 0.86488 0.83855 0.92575 0.94829 0.74299 0.93436 0.89065 0.94066 0.90327 0.89002 0.93028 0.93835 0.88803 0.90521 0.99240 0.93759 0.95069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 7.95 71.98 0.57 -3.48 16 2 C 0.15 5.48 3.50 44.97 0.16 5.64 16 3 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 4 C -0.12 -3.01 5.20 30.67 0.16 -2.85 16 5 C -0.11 -2.99 5.59 30.62 0.17 -2.82 16 6 C 0.13 4.71 2.81 45.07 0.13 4.84 16 7 H 0.06 2.37 7.58 -2.38 -0.02 2.36 16 8 N -0.69 -21.75 4.92 -442.16 -2.17 -23.92 16 9 C 0.51 17.59 7.80 87.66 0.68 18.27 16 10 O -0.60 -27.70 15.65 -3.03 -0.05 -27.74 16 11 C -0.13 -3.08 5.81 29.85 0.17 -2.90 16 12 C 0.14 4.14 4.96 86.38 0.43 4.57 16 13 N -0.71 -15.21 5.34 -463.07 -2.47 -17.68 16 14 C 0.51 13.25 6.48 87.66 0.57 13.82 16 15 O -0.59 -22.20 15.98 -3.03 -0.05 -22.25 16 16 C -0.08 -1.33 0.87 -52.93 -0.05 -1.38 16 17 C -0.13 -2.33 7.76 71.98 0.56 -1.77 16 18 C -0.14 -1.37 8.37 71.98 0.60 -0.77 16 19 C -0.14 -1.74 8.37 71.98 0.60 -1.14 16 20 C 0.17 8.43 4.88 86.36 0.42 8.86 16 21 N -0.59 -27.47 2.90 -675.23 -1.96 -29.43 16 22 C -0.23 -12.09 8.57 84.03 0.72 -11.37 16 23 H 0.08 3.87 6.24 -2.91 -0.02 3.85 16 24 C -0.06 -3.13 4.94 84.86 0.42 -2.71 16 25 N -0.94 -58.38 11.23 21.65 0.24 -58.14 16 26 Si 0.95 45.83 29.58 68.60 2.03 47.86 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.31 -15.86 7.11 99.48 0.71 -15.16 16 29 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 30 H 0.06 1.74 7.44 -2.39 -0.02 1.72 16 31 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.03 1.20 7.63 -2.39 -0.02 1.19 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.64 6.40 -2.39 -0.02 1.62 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.41 10.20 6.77 -92.71 -0.63 9.57 16 38 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 41 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 42 H 0.42 5.22 7.31 -92.70 -0.68 4.54 16 43 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 46 H 0.08 0.52 7.57 -2.39 -0.02 0.50 16 47 H 0.09 0.54 8.14 -2.38 -0.02 0.53 16 48 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.08 0.71 7.56 -2.39 -0.02 0.70 16 52 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 53 H 0.04 2.63 6.15 -2.38 -0.01 2.61 16 54 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -84.15 417.99 1.46 -82.68 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.42 Total: 23.82 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 6.32 Total: 24.80 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -6.36 Total: -129.17 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.10 Total: -49.99 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -84.15 1.46 -82.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132214597.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.548 kcal (2) G-P(sol) polarization free energy of solvation -84.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds