Wall clock time and date at job start Wed Apr 1 2020 00:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58582 * 2 1 4 4 C 1.53195 * 109.58728 * 239.57550 * 2 1 3 5 5 C 1.53042 * 109.31517 * 185.57770 * 4 2 1 6 6 C 1.53040 * 109.53748 * 61.36042 * 5 4 2 7 7 H 1.09004 * 109.51957 * 58.60637 * 6 5 4 8 8 N 1.46506 * 109.49927 * 178.68514 * 6 5 4 9 9 C 1.34769 * 120.00063 * 204.84273 * 8 6 5 10 10 O 1.21281 * 120.00075 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00017 * 180.02562 * 9 8 6 12 12 N 1.46500 * 109.47088 * 180.02562 * 11 9 8 13 13 C 1.34780 * 119.99484 * 180.02562 * 12 11 9 14 14 O 1.21274 * 120.00235 * 359.97438 * 13 12 11 15 15 C 1.50707 * 119.99518 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.46653 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47327 * 60.00089 * 16 15 13 18 18 C 1.53001 * 109.46864 * 179.97438 * 16 15 13 19 19 C 1.53002 * 109.47410 * 299.99417 * 16 15 13 20 20 C 1.53192 * 109.31512 * 298.63938 * 6 5 4 21 21 N 1.46920 * 109.58968 * 120.28594 * 2 1 3 22 22 C 1.36937 * 120.62933 * 353.41771 * 21 2 1 23 23 H 1.07995 * 120.00350 * 29.50180 * 22 21 2 24 24 C 1.38817 * 120.00233 * 209.50704 * 22 21 2 25 25 N 1.31624 * 119.99756 * 15.61676 * 24 22 21 26 26 Si 1.86800 * 119.99995 * 195.62001 * 24 22 21 27 27 H 1.48500 * 109.46826 * 94.71900 * 26 24 22 28 28 H 1.48496 * 109.46682 * 214.71692 * 26 24 22 29 29 H 1.48495 * 109.47116 * 334.71925 * 26 24 22 30 30 H 1.08992 * 109.47081 * 299.71723 * 1 2 3 31 31 H 1.08998 * 109.46765 * 59.71611 * 1 2 3 32 32 H 1.09001 * 109.46973 * 179.71512 * 1 2 3 33 33 H 1.08999 * 109.49551 * 305.52718 * 4 2 1 34 34 H 1.08999 * 109.49902 * 65.62519 * 4 2 1 35 35 H 1.09005 * 109.45758 * 301.34713 * 5 4 2 36 36 H 1.08993 * 109.46106 * 181.38411 * 5 4 2 37 37 H 0.96994 * 119.99524 * 24.83669 * 8 6 5 38 38 H 1.08996 * 109.46976 * 59.99238 * 11 9 8 39 39 H 1.09000 * 109.46923 * 299.99677 * 11 9 8 40 40 H 0.97000 * 120.00146 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.46904 * 299.99567 * 15 13 12 42 42 H 1.08995 * 109.47222 * 59.99281 * 15 13 12 43 43 H 1.08994 * 109.47069 * 59.99539 * 17 16 15 44 44 H 1.09006 * 109.46986 * 179.97438 * 17 16 15 45 45 H 1.08998 * 109.46582 * 299.99442 * 17 16 15 46 46 H 1.08996 * 109.47580 * 59.99832 * 18 16 15 47 47 H 1.08997 * 109.47341 * 179.97438 * 18 16 15 48 48 H 1.09000 * 109.46985 * 299.99863 * 18 16 15 49 49 H 1.09001 * 109.46431 * 60.00113 * 19 16 15 50 50 H 1.08997 * 109.47222 * 180.02562 * 19 16 15 51 51 H 1.08995 * 109.46913 * 300.00875 * 19 16 15 52 52 H 1.08999 * 109.58435 * 174.42223 * 20 6 5 53 53 H 1.08995 * 109.58407 * 294.84462 * 20 6 5 54 54 H 0.96998 * 119.99844 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2446 5 6 3.5675 -0.8494 -1.1692 6 6 3.9570 -1.6656 0.0655 7 1 3.4988 -2.6530 0.0087 8 7 5.4143 -1.8051 0.1197 9 6 5.9678 -2.8454 0.7739 10 8 5.2594 -3.6657 1.3181 11 6 7.4669 -2.9886 0.8301 12 7 7.8144 -4.1906 1.5922 13 6 9.1079 -4.5222 1.7747 14 8 9.9842 -3.8259 1.3077 15 6 9.4654 -5.7590 2.5582 16 6 10.9873 -5.9043 2.6153 17 6 11.5917 -4.6756 3.2981 18 6 11.3503 -7.1595 3.4113 19 6 11.5421 -6.0227 1.1944 20 6 3.4651 -0.9453 1.3248 21 7 2.0226 -0.6981 1.1952 22 6 1.1537 -1.1108 2.1698 23 1 0.1384 -1.3734 1.9122 24 6 1.5779 -1.1916 3.4891 25 7 2.6903 -0.5939 3.8605 26 14 0.5702 -2.1486 4.7373 27 1 1.1015 -3.5310 4.8472 28 1 0.6553 -1.4790 6.0600 29 1 -0.8472 -2.1966 4.2970 30 1 -0.3633 0.5094 0.8924 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.6030 -1.7269 -1.2892 34 1 1.7660 -0.1694 -2.1366 35 1 4.0062 0.1461 -1.0995 36 1 3.9378 -1.3473 -2.0652 37 1 5.9808 -1.1489 -0.3153 38 1 7.8976 -2.1129 1.3156 39 1 7.8620 -3.0739 -0.1822 40 1 7.1135 -4.7473 1.9661 41 1 9.0698 -5.6748 3.5704 42 1 9.0351 -6.6343 2.0716 43 1 11.1964 -4.5913 4.3104 44 1 12.6760 -4.7794 3.3392 45 1 11.3331 -3.7812 2.7314 46 1 10.9197 -8.0351 2.9254 47 1 12.4345 -7.2633 3.4517 48 1 10.9551 -7.0747 4.4236 49 1 11.2835 -5.1282 0.6277 50 1 12.6264 -6.1267 1.2352 51 1 11.1115 -6.8980 0.7081 52 1 3.6519 -1.5690 2.1990 53 1 3.9903 0.0038 1.4316 54 1 2.9869 -0.6507 4.7822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132499523.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:35 Heat of formation + Delta-G solvation = -92.342783 kcal Electronic energy + Delta-G solvation = -30630.898284 eV Core-core repulsion = 26601.650404 eV Total energy + Delta-G solvation = -4029.247880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.46421 -40.72753 -39.28170 -37.53980 -36.09935 -35.37410 -34.66182 -32.45419 -31.75366 -30.40686 -28.21303 -28.07321 -27.99799 -27.41197 -26.33004 -24.01352 -22.45357 -21.68680 -21.55588 -20.94287 -19.94682 -18.61002 -18.34671 -17.63335 -17.22811 -17.05512 -16.89886 -16.27441 -16.01203 -15.71496 -15.48525 -15.28798 -15.22298 -15.12034 -15.01424 -14.61193 -14.25622 -14.12883 -13.85780 -13.66210 -13.48550 -13.08472 -12.94445 -12.92372 -12.73999 -12.73168 -12.65053 -12.57541 -12.27641 -12.20473 -12.10767 -12.02688 -11.97178 -11.66519 -11.62623 -11.52128 -11.43402 -11.14560 -10.93842 -10.54418 -10.51981 -10.19997 -10.05116 -8.61832 -7.85255 -5.31325 1.41372 1.45344 1.51845 1.52578 1.64632 1.83291 2.44872 2.52664 3.30675 3.54690 3.71160 3.76951 3.88611 3.95150 3.99042 4.10049 4.24535 4.26240 4.32163 4.39039 4.40816 4.61342 4.62159 4.64936 4.67970 4.71563 4.80822 4.86343 4.88795 4.89715 5.00916 5.01052 5.08148 5.10769 5.15347 5.19251 5.19313 5.30020 5.32697 5.35816 5.39420 5.45378 5.54764 5.55889 5.61597 5.68501 5.71049 5.80026 6.40853 6.48039 6.54478 7.15685 7.21758 7.23632 7.90337 8.39494 9.19738 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.002516 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.076021 B =11126.143177 C =12597.035547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.132 3.868 7 H 0.054 0.946 8 N -0.703 5.703 9 C 0.503 3.497 10 O -0.578 6.578 11 C 0.110 3.890 12 N -0.722 5.722 13 C 0.515 3.485 14 O -0.558 6.558 15 C -0.132 4.132 16 C -0.052 4.052 17 C -0.152 4.152 18 C -0.138 4.138 19 C -0.150 4.150 20 C 0.179 3.821 21 N -0.603 5.603 22 C -0.249 4.249 23 H 0.074 0.926 24 C -0.053 4.053 25 N -0.933 5.933 26 Si 0.956 3.044 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.263 1.263 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.416 0.584 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.412 0.588 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.054 0.946 51 H 0.054 0.946 52 H 0.043 0.957 53 H -0.003 1.003 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.101 -7.792 -9.693 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.026 3.974 7 H 0.073 0.927 8 N -0.355 5.355 9 C 0.289 3.711 10 O -0.457 6.457 11 C -0.017 4.017 12 N -0.376 5.376 13 C 0.303 3.697 14 O -0.437 6.437 15 C -0.171 4.171 16 C -0.052 4.052 17 C -0.210 4.210 18 C -0.196 4.196 19 C -0.207 4.207 20 C 0.052 3.948 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.248 4.248 25 N -0.579 5.579 26 Si 0.785 3.215 27 H -0.222 1.222 28 H -0.222 1.222 29 H -0.187 1.187 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.249 0.751 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.062 0.938 53 H 0.015 0.985 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.225 -7.838 -9.507 18.819 hybrid contribution -0.611 -0.143 1.341 1.481 sum 13.614 -7.981 -8.166 17.768 Atomic orbital electron populations 1.21736 0.94857 1.01137 1.00994 1.20812 0.94245 0.93389 0.86826 0.96136 1.21945 0.94691 1.00861 0.98218 1.21654 0.96991 1.00052 0.95923 1.21534 0.79049 0.99241 0.97591 0.92739 1.45800 1.07840 1.27026 1.54809 1.20982 0.91124 0.81226 0.77726 1.90720 1.64452 1.43998 1.46562 1.21034 0.90022 0.90660 0.99978 1.45928 1.08665 1.27254 1.55781 1.21147 0.81087 0.87482 0.79937 1.90572 1.47661 1.54300 1.51172 1.21868 0.98178 0.95470 1.01609 1.20298 0.92175 0.96269 0.96491 1.22074 1.00513 0.98573 0.99798 1.21861 1.01925 0.96029 0.99763 1.22052 1.00628 1.02205 0.95833 1.20776 0.83719 0.95295 0.95021 1.44322 1.02597 1.65695 1.20110 1.19476 0.95392 1.36433 0.86636 0.90861 1.25790 0.99142 1.00959 0.98937 1.70166 1.25755 1.45681 1.16340 0.85406 0.79230 0.78069 0.78782 1.22245 1.22180 1.18737 0.94427 0.90341 0.93518 0.92854 0.88712 0.90863 0.89490 0.74694 0.87861 0.86375 0.75082 0.87709 0.87023 0.93198 0.92593 0.92070 0.91742 0.92008 0.92158 0.91971 0.92687 0.92690 0.93833 0.98478 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.95 71.98 0.57 -4.01 16 2 C 0.15 5.90 3.50 44.98 0.16 6.06 16 3 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.12 -3.50 5.37 30.67 0.16 -3.33 16 5 C -0.11 -2.99 5.35 30.62 0.16 -2.83 16 6 C 0.13 4.81 2.60 45.07 0.12 4.93 16 7 H 0.05 2.32 7.58 -2.38 -0.02 2.30 16 8 N -0.70 -20.39 5.08 -442.15 -2.25 -22.64 16 9 C 0.50 15.82 7.86 87.66 0.69 16.51 16 10 O -0.58 -23.80 15.33 -3.03 -0.05 -23.85 16 11 C 0.11 2.61 6.15 85.63 0.53 3.14 16 12 N -0.72 -17.38 5.53 -466.78 -2.58 -19.96 16 13 C 0.51 11.84 7.24 87.66 0.63 12.47 16 14 O -0.56 -15.24 11.35 -3.01 -0.03 -15.27 16 15 C -0.13 -2.25 4.77 29.85 0.14 -2.10 16 16 C -0.05 -0.88 0.77 -52.18 -0.04 -0.92 16 17 C -0.15 -2.98 8.18 71.98 0.59 -2.39 16 18 C -0.14 -1.78 8.47 71.98 0.61 -1.17 16 19 C -0.15 -2.71 8.18 71.98 0.59 -2.13 16 20 C 0.18 8.65 4.86 86.36 0.42 9.07 16 21 N -0.60 -29.81 2.99 -675.26 -2.02 -31.83 16 22 C -0.25 -13.70 8.58 84.03 0.72 -12.98 16 23 H 0.07 3.90 6.23 -2.91 -0.02 3.88 16 24 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 25 N -0.93 -56.95 11.22 21.65 0.24 -56.71 16 26 Si 0.96 46.76 29.58 68.60 2.03 48.79 16 27 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 30 H 0.04 1.48 7.62 -2.39 -0.02 1.46 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.69 7.44 -2.39 -0.02 1.67 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.42 8.62 8.60 -92.71 -0.80 7.83 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.41 10.30 7.44 -92.71 -0.69 9.61 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.06 1.50 5.51 -2.39 -0.01 1.49 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.06 1.43 5.51 -2.39 -0.01 1.42 16 50 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.04 2.54 6.12 -2.39 -0.01 2.52 16 53 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 54 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -74.28 414.09 1.22 -73.06 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.60 Total: 30.72 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.48 Total: 17.68 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -6.60 Total: -131.13 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.08 Total: -39.12 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.28 1.22 -73.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132499523.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.286 kcal (2) G-P(sol) polarization free energy of solvation -74.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds