Wall clock time and date at job start Wed Apr 1 2020 00:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46820 * 2 1 4 4 O 1.21273 * 120.00236 * 359.72604 * 3 2 1 5 5 N 1.34782 * 119.99651 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99894 * 179.72252 * 5 3 2 7 7 C 1.52996 * 109.46941 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47091 * 175.39502 * 7 6 5 9 9 C 1.53002 * 115.55129 * 279.48773 * 8 7 6 10 10 N 1.46901 * 109.46830 * 296.02120 * 9 8 7 11 11 C 1.46900 * 110.99755 * 185.24297 * 10 9 8 12 12 C 1.50695 * 109.47303 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99783 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00448 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99827 * 359.97438 * 14 12 11 16 16 C 1.53001 * 109.47323 * 89.99808 * 15 14 12 17 17 C 1.46497 * 120.00128 * 179.97438 * 14 12 11 18 18 C 1.50699 * 109.47345 * 90.00110 * 17 14 12 19 19 H 1.08000 * 119.99632 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00379 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00018 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 119.99776 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47276 * 90.00014 * 22 20 18 24 24 H 1.48503 * 109.47067 * 209.99693 * 22 20 18 25 25 H 1.48502 * 109.47643 * 329.99834 * 22 20 18 26 26 C 1.53001 * 117.49937 * 133.77574 * 8 7 6 27 27 C 1.53001 * 117.49787 * 65.15372 * 8 7 6 28 28 H 1.08997 * 109.46715 * 299.99989 * 1 2 3 29 29 H 1.08997 * 109.46867 * 60.00286 * 1 2 3 30 30 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46715 * 240.00011 * 2 1 3 32 32 H 1.08997 * 109.46867 * 119.99714 * 2 1 3 33 33 H 0.96998 * 120.00083 * 359.72873 * 5 3 2 34 34 H 1.08996 * 109.46967 * 300.00501 * 6 5 3 35 35 H 1.09005 * 109.46688 * 60.00221 * 6 5 3 36 36 H 1.08996 * 109.47353 * 295.39303 * 7 6 5 37 37 H 1.08999 * 109.46943 * 55.40106 * 7 6 5 38 38 H 1.09007 * 109.47042 * 56.02235 * 9 8 7 39 39 H 1.08999 * 109.47236 * 176.02169 * 9 8 7 40 40 H 1.00899 * 111.00097 * 61.29573 * 10 9 8 41 41 H 1.09001 * 109.47536 * 300.00043 * 11 10 9 42 42 H 1.08997 * 109.47307 * 59.99991 * 11 10 9 43 43 H 1.08999 * 109.47170 * 209.99960 * 15 14 12 44 44 H 1.08997 * 109.47051 * 329.99814 * 15 14 12 45 45 H 1.08998 * 109.47413 * 179.97438 * 16 15 14 46 46 H 1.08999 * 109.47123 * 300.00182 * 16 15 14 47 47 H 1.09006 * 109.46882 * 60.00065 * 16 15 14 48 48 H 1.09000 * 109.47453 * 210.00227 * 17 14 12 49 49 H 1.09002 * 109.47547 * 330.00188 * 17 14 12 50 50 H 0.96998 * 120.00264 * 180.02562 * 21 20 18 51 51 H 1.08995 * 117.49766 * 0.02562 * 26 8 7 52 52 H 1.09001 * 117.49714 * 145.02042 * 26 8 7 53 53 H 1.08998 * 117.49965 * 214.98265 * 27 8 7 54 54 H 1.08998 * 117.49767 * 0.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 -0.0050 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 -0.0056 7 6 5.3758 3.0483 -0.0030 8 6 5.8860 4.4855 -0.1252 9 6 5.8939 5.0648 -1.5413 10 7 6.8310 4.3023 -2.3770 11 6 6.9588 4.9063 -3.7100 12 6 7.9254 4.0983 -4.5369 13 8 8.4560 3.1163 -4.0624 14 7 8.2003 4.4669 -5.8039 15 6 7.5589 5.6527 -6.3773 16 6 8.4247 6.8839 -6.1025 17 6 9.1403 3.6817 -6.6075 18 6 8.3901 2.6064 -7.3504 19 1 7.3199 2.5171 -7.2356 20 6 9.0696 1.7373 -8.1773 21 7 8.4148 0.7992 -8.8260 22 14 10.9205 1.8922 -8.3763 23 1 11.6000 1.0574 -7.3532 24 1 11.3129 1.4305 -9.7321 25 1 11.3201 3.3118 -8.2019 26 6 7.0051 4.9209 0.8230 27 6 5.5818 5.4436 1.0283 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9878 0.9299 0.0049 34 1 3.4836 3.5578 -0.8985 35 1 3.4813 3.5665 0.8814 36 1 5.7375 2.6123 0.9282 37 1 5.7405 2.4605 -0.8453 38 1 4.8922 4.9995 -1.9662 39 1 6.2059 6.1086 -1.5051 40 1 6.5515 3.3351 -2.4435 41 1 5.9845 4.9178 -4.1986 42 1 7.3284 5.9270 -3.6125 43 1 7.4465 5.5204 -7.4533 44 1 6.5774 5.7901 -5.9236 45 1 7.9477 7.7661 -6.5295 46 1 8.5371 7.0162 -5.0264 47 1 9.4062 6.7465 -6.5562 48 1 9.6413 4.3349 -7.3220 49 1 9.8816 3.2220 -5.9538 50 1 8.8929 0.1875 -9.4075 51 1 7.3781 4.1834 1.5335 52 1 7.7474 5.6201 0.4379 53 1 5.3878 6.4867 0.7784 54 1 5.0186 5.0499 1.8744 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163036676.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:12 Heat of formation + Delta-G solvation = -83.983934 kcal Electronic energy + Delta-G solvation = -29704.160555 eV Core-core repulsion = 25675.275142 eV Total energy + Delta-G solvation = -4028.885413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89633 -40.72392 -39.56513 -37.04256 -36.12840 -35.68284 -34.81451 -33.74926 -31.92337 -31.12678 -30.23388 -28.57133 -26.00511 -25.41551 -24.36546 -23.96611 -23.49903 -22.85810 -21.45235 -20.19799 -19.54414 -19.10197 -18.13712 -17.84114 -17.49016 -17.11100 -16.97323 -16.79373 -16.39644 -16.15134 -15.63785 -15.35412 -15.10722 -14.94771 -14.76804 -14.70982 -14.55901 -14.28258 -14.00445 -13.77222 -13.44912 -13.42644 -13.25054 -13.21743 -13.04693 -12.90782 -12.66475 -12.56327 -12.53682 -12.35896 -12.25023 -12.05294 -12.04233 -11.94969 -11.88974 -11.74645 -11.14395 -10.92271 -10.83635 -10.64415 -10.58986 -10.11862 -9.40930 -9.34398 -8.34766 -6.39461 1.32011 1.35925 1.44346 1.62836 1.82809 2.19719 2.23965 2.30350 2.81278 2.99738 3.35750 3.68610 3.73777 3.79916 3.84510 3.97977 4.07316 4.09887 4.20502 4.24018 4.28806 4.34494 4.37741 4.38687 4.45268 4.56568 4.62848 4.67302 4.72299 4.75857 4.80212 4.88233 4.91447 4.97282 5.00053 5.01582 5.03792 5.06527 5.10779 5.16684 5.28529 5.30519 5.35353 5.38739 5.46625 5.46738 5.65334 5.93480 6.24489 6.28527 6.53283 6.61497 6.74762 7.21620 7.24189 7.45977 8.82212 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.002458 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.349093 B =11386.781498 C =13222.639078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.502 3.498 4 O -0.591 6.591 5 N -0.725 5.725 6 C 0.127 3.873 7 C -0.085 4.085 8 C -0.128 4.128 9 C 0.099 3.901 10 N -0.679 5.679 11 C 0.056 3.944 12 C 0.496 3.504 13 O -0.582 6.582 14 N -0.602 5.602 15 C 0.098 3.902 16 C -0.160 4.160 17 C 0.227 3.773 18 C -0.534 4.534 19 H 0.028 0.972 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.947 3.053 23 H -0.276 1.276 24 H -0.275 1.275 25 H -0.240 1.240 26 C -0.158 4.158 27 C -0.159 4.159 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.415 0.585 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.341 0.659 41 H 0.069 0.931 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.045 0.955 48 H 0.046 0.954 49 H 0.017 0.983 50 H 0.268 0.732 51 H 0.096 0.904 52 H 0.091 0.909 53 H 0.103 0.897 54 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 9.108 20.410 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.290 3.710 4 O -0.472 6.472 5 N -0.377 5.377 6 C 0.003 3.997 7 C -0.123 4.123 8 C -0.129 4.129 9 C -0.029 4.029 10 N -0.312 5.312 11 C -0.076 4.076 12 C 0.285 3.715 13 O -0.461 6.461 14 N -0.334 5.334 15 C -0.024 4.024 16 C -0.218 4.218 17 C 0.104 3.896 18 C -0.572 4.572 19 H 0.046 0.954 20 C -0.187 4.187 21 N -0.586 5.586 22 Si 0.770 3.230 23 H -0.202 1.202 24 H -0.200 1.200 25 H -0.163 1.163 26 C -0.195 4.195 27 C -0.196 4.196 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.252 0.748 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.160 0.840 41 H 0.087 0.913 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.077 0.923 51 H 0.115 0.885 52 H 0.110 0.890 53 H 0.121 0.879 54 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.176 9.456 20.749 24.223 hybrid contribution 0.088 -1.116 -1.118 1.582 sum -8.088 8.340 19.630 22.810 Atomic orbital electron populations 1.21535 0.93641 1.02567 1.01804 1.21712 0.98152 0.91664 1.06510 1.21498 0.82069 0.92932 0.74492 1.90675 1.56526 1.48341 1.51680 1.46084 1.07259 1.09541 1.74828 1.21234 0.94238 0.82833 1.01370 1.21204 0.92655 0.95075 1.03351 1.21194 1.05387 0.94999 0.91369 1.21493 0.93185 0.97682 0.90577 1.60122 1.52973 1.06533 1.11530 1.21815 0.97233 0.99274 0.89242 1.21234 0.83134 0.85114 0.82012 1.90632 1.53990 1.29355 1.72156 1.48059 1.44780 1.28197 1.12372 1.21759 0.96915 0.83927 0.99804 1.22154 1.00075 0.97192 1.02375 1.19259 0.89302 0.90807 0.90232 1.21549 0.94631 1.14977 1.26060 0.95396 1.25838 1.03942 0.94195 0.94710 1.70045 1.38429 1.19489 1.30603 0.85724 0.79082 0.80441 0.77764 1.20156 1.19987 1.16287 1.22974 0.91737 1.03433 1.01320 1.23088 0.98694 0.99148 0.98685 0.93213 0.93912 0.89761 0.87129 0.86170 0.74834 0.93396 0.91727 0.89692 0.91461 0.94677 0.89574 0.84018 0.91298 0.85852 0.91090 0.88799 0.88799 0.91921 0.93546 0.93592 0.96520 0.92271 0.88535 0.89015 0.87894 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.20 71.98 0.66 -1.38 16 2 C -0.14 -1.79 6.42 29.85 0.19 -1.60 16 3 C 0.50 10.30 7.83 87.66 0.69 10.98 16 4 O -0.59 -17.62 15.98 -3.01 -0.05 -17.67 16 5 N -0.72 -11.97 5.56 -463.06 -2.57 -14.54 16 6 C 0.13 2.29 5.51 86.38 0.48 2.76 16 7 C -0.09 -1.36 5.24 30.59 0.16 -1.20 16 8 C -0.13 -2.14 1.73 -52.18 -0.09 -2.23 16 9 C 0.10 1.88 5.55 86.30 0.48 2.36 16 10 N -0.68 -17.76 6.09 -517.93 -3.16 -20.92 16 11 C 0.06 1.52 4.71 85.56 0.40 1.92 16 12 C 0.50 19.78 7.71 87.66 0.68 20.46 16 13 O -0.58 -28.97 15.78 -3.05 -0.05 -29.01 16 14 N -0.60 -24.13 2.46 -826.17 -2.03 -26.16 16 15 C 0.10 2.82 5.93 86.38 0.51 3.33 16 16 C -0.16 -3.45 10.24 71.98 0.74 -2.72 16 17 C 0.23 11.08 4.23 85.63 0.36 11.44 16 18 C -0.53 -31.46 9.94 25.60 0.25 -31.21 16 19 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 20 C 0.01 0.66 5.47 84.66 0.46 1.12 16 21 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 22 Si 0.95 44.66 27.47 68.60 1.88 46.55 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 26 C -0.16 -2.50 9.90 30.60 0.30 -2.20 16 27 C -0.16 -2.12 9.58 30.60 0.29 -1.83 16 28 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 29 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.42 4.60 8.47 -92.71 -0.79 3.82 16 34 H 0.05 1.05 7.69 -2.39 -0.02 1.03 16 35 H 0.06 1.21 7.82 -2.38 -0.02 1.19 16 36 H 0.08 1.15 7.94 -2.39 -0.02 1.13 16 37 H 0.07 1.27 6.73 -2.39 -0.02 1.25 16 38 H 0.04 0.67 7.69 -2.38 -0.02 0.65 16 39 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 40 H 0.34 10.03 7.06 -89.69 -0.63 9.40 16 41 H 0.07 1.67 7.40 -2.39 -0.02 1.65 16 42 H 0.12 2.63 7.19 -2.39 -0.02 2.61 16 43 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 44 H 0.09 2.16 6.44 -2.39 -0.02 2.14 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.24 7.22 -2.39 -0.02 1.22 16 47 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.05 2.08 7.13 -2.39 -0.02 2.07 16 49 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 50 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 51 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 52 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.10 1.22 7.99 -2.39 -0.02 1.21 16 Total: -1.00 -83.47 434.66 0.31 -83.16 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.59 Total: 28.13 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.57 Total: 10.02 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -7.46 Total: -121.16 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.10 Total: -46.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Total: -83.47 0.31 -83.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163036676.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.824 kcal (2) G-P(sol) polarization free energy of solvation -83.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds