Wall clock time and date at job start Wed Apr 1 2020 00:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.33205 * 2 1 4 4 C 1.54476 * 110.37247 * 122.25728 * 2 1 3 5 5 C 1.54514 * 104.06325 * 142.80841 * 4 2 1 6 6 C 1.54483 * 104.05989 * 359.97438 * 5 4 2 7 7 H 1.09004 * 110.36953 * 94.96637 * 6 5 4 8 8 C 1.52998 * 110.36934 * 217.18549 * 6 5 4 9 9 C 1.52999 * 109.46973 * 184.99810 * 8 6 5 10 10 C 1.50705 * 109.47058 * 180.02562 * 9 8 6 11 11 O 1.21274 * 119.99826 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99901 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99685 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47021 * 179.97438 * 13 12 10 15 15 N 1.46894 * 109.47389 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00260 * 294.30863 * 15 14 13 17 17 C 1.53236 * 109.34177 * 172.74312 * 16 15 14 18 18 N 1.47076 * 108.52092 * 53.82920 * 17 16 15 19 19 C 1.36945 * 120.88425 * 128.78852 * 18 17 16 20 20 H 1.07991 * 120.00480 * 206.65729 * 19 18 17 21 21 C 1.38811 * 119.99342 * 26.66762 * 19 18 17 22 22 N 1.31618 * 120.00754 * 17.01767 * 21 19 18 23 23 Si 1.86805 * 119.99578 * 197.02219 * 21 19 18 24 24 H 1.48503 * 109.47447 * 59.99674 * 23 21 19 25 25 H 1.48499 * 109.47031 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47098 * 299.99665 * 23 21 19 27 27 C 1.47082 * 118.23876 * 308.81545 * 18 17 16 28 28 C 1.46893 * 111.00164 * 169.99868 * 15 14 13 29 29 O 1.44413 * 104.80661 * 336.02155 * 6 5 4 30 30 H 1.09006 * 109.47207 * 297.74531 * 1 2 3 31 31 H 1.09000 * 109.47533 * 57.74629 * 1 2 3 32 32 H 1.09007 * 109.47400 * 177.74533 * 1 2 3 33 33 H 1.08997 * 110.51604 * 24.16394 * 4 2 1 34 34 H 1.08995 * 110.50959 * 261.45085 * 4 2 1 35 35 H 1.08997 * 110.51027 * 241.35500 * 5 4 2 36 36 H 1.09004 * 110.62854 * 118.69819 * 5 4 2 37 37 H 1.09002 * 109.47000 * 65.00684 * 8 6 5 38 38 H 1.08998 * 109.47741 * 305.00788 * 8 6 5 39 39 H 1.08993 * 109.47438 * 300.00328 * 9 8 6 40 40 H 1.09004 * 109.46984 * 60.00877 * 9 8 6 41 41 H 0.97002 * 119.99959 * 0.02562 * 12 10 9 42 42 H 1.08993 * 109.47118 * 299.99942 * 13 12 10 43 43 H 1.09002 * 109.47319 * 60.00487 * 13 12 10 44 44 H 1.09003 * 109.46902 * 300.00409 * 14 13 12 45 45 H 1.09002 * 109.46514 * 60.00193 * 14 13 12 46 46 H 1.08999 * 109.48959 * 292.70695 * 16 15 14 47 47 H 1.09001 * 109.49737 * 52.77896 * 16 15 14 48 48 H 1.08998 * 109.63194 * 294.11586 * 17 16 15 49 49 H 1.09002 * 109.78559 * 173.63050 * 17 16 15 50 50 H 0.96993 * 120.00419 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.62379 * 291.47336 * 27 18 17 52 52 H 1.08992 * 109.78976 * 170.98982 * 27 18 17 53 53 H 1.08991 * 109.49567 * 307.21809 * 28 15 14 54 54 H 1.09005 * 109.49101 * 67.27226 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7729 1.2246 5 6 3.3177 -1.5051 0.6872 6 6 3.3869 -1.0884 -0.7987 7 1 4.0534 -0.2349 -0.9228 8 6 3.8597 -2.2617 -1.6594 9 6 4.0402 -1.7936 -3.1048 10 6 4.5053 -2.9495 -3.9527 11 8 4.6752 -4.0402 -3.4504 12 7 4.7325 -2.7709 -5.2692 13 6 5.1841 -3.8946 -6.0935 14 6 5.3648 -3.4266 -7.5390 15 7 5.8182 -4.5532 -8.3654 16 6 7.1603 -4.9947 -7.9631 17 6 7.5209 -6.2771 -8.7204 18 7 7.3527 -6.0321 -10.1608 19 6 8.3546 -6.3285 -11.0460 20 1 8.4289 -5.7885 -11.9782 21 6 9.2746 -7.3234 -10.7450 22 7 9.0106 -8.1998 -9.7991 23 14 10.8876 -7.4185 -11.6824 24 1 11.6473 -6.1571 -11.4897 25 1 11.6889 -8.5608 -11.1742 26 1 10.6093 -7.6127 -13.1280 27 6 6.0800 -5.4596 -10.6253 28 6 5.7760 -4.2094 -9.7929 29 8 2.0323 -0.7256 -1.1437 30 1 -0.3634 0.4784 0.9096 31 1 -0.3634 0.5484 -0.8691 32 1 -0.3634 -1.0269 -0.0404 33 1 1.3276 -1.4905 1.5786 34 1 2.3429 -0.0821 2.0215 35 1 3.1954 -2.5846 0.7755 36 1 4.2120 -1.1783 1.2179 37 1 3.1174 -3.0592 -1.6259 38 1 4.8100 -2.6336 -1.2764 39 1 3.0899 -1.4219 -3.4878 40 1 4.7825 -0.9961 -3.1384 41 1 4.5970 -1.8984 -5.6708 42 1 6.1340 -4.2675 -5.7105 43 1 4.4410 -4.6914 -6.0602 44 1 4.4146 -3.0540 -7.9216 45 1 6.1077 -2.6297 -7.5725 46 1 7.8855 -4.2162 -8.1999 47 1 7.1728 -5.1898 -6.8907 48 1 6.8605 -7.0856 -8.4069 49 1 8.5560 -6.5490 -8.5137 50 1 9.6537 -8.8947 -9.5886 51 1 5.2810 -6.1895 -10.4949 52 1 6.1598 -5.1882 -11.6779 53 1 4.7846 -3.8350 -10.0477 54 1 6.5202 -3.4415 -10.0043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266297091.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:01 Heat of formation + Delta-G solvation = -89.411718 kcal Electronic energy + Delta-G solvation = -29192.724955 eV Core-core repulsion = 25163.604176 eV Total energy + Delta-G solvation = -4029.120780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.96887 -40.35678 -39.70110 -36.88036 -35.41679 -34.89384 -33.30845 -33.13656 -31.73067 -31.65954 -30.25784 -28.03637 -26.94175 -25.03444 -24.32306 -23.88773 -22.60847 -22.24203 -21.69900 -21.29079 -20.81283 -18.75021 -18.05578 -17.50527 -17.26008 -17.09121 -16.75637 -16.56300 -16.07063 -15.89339 -15.83535 -15.35880 -15.24094 -15.18308 -14.87753 -14.68631 -14.54672 -14.22557 -14.06531 -13.84952 -13.35785 -13.22291 -13.06531 -12.99800 -12.83216 -12.62486 -12.60289 -12.55982 -12.50379 -12.28100 -12.06176 -12.04501 -11.86466 -11.79897 -11.64458 -11.56850 -11.48487 -11.43870 -10.89519 -10.64248 -10.58806 -10.09635 -9.31075 -8.69463 -7.88036 -5.33269 1.46203 1.48759 1.55834 1.65846 2.09420 2.50618 2.90280 3.08755 3.27539 3.63787 3.67120 3.71864 3.83004 3.89948 3.98582 4.04893 4.07329 4.17018 4.29006 4.33863 4.34485 4.44032 4.45383 4.51295 4.54269 4.58489 4.64106 4.68127 4.70145 4.73532 4.82265 4.84422 4.92379 4.96152 4.98089 5.00716 5.03787 5.11764 5.18032 5.19582 5.21269 5.27120 5.32297 5.35852 5.42945 5.60275 5.66512 6.03314 6.13163 6.22369 6.36392 6.57161 7.12106 7.28380 7.83171 8.37661 9.18809 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030098 B = 0.001528 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.056570 B =18319.972940 C =18885.486436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.076 3.924 7 H 0.087 0.913 8 C -0.096 4.096 9 C -0.126 4.126 10 C 0.506 3.494 11 O -0.591 6.591 12 N -0.716 5.716 13 C 0.129 3.871 14 C 0.055 3.945 15 N -0.544 5.544 16 C 0.051 3.949 17 C 0.185 3.815 18 N -0.614 5.614 19 C -0.266 4.266 20 H 0.070 0.930 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.141 3.859 28 C 0.058 3.942 29 O -0.391 6.391 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.418 0.582 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.102 0.898 45 H 0.047 0.953 46 H 0.024 0.976 47 H 0.074 0.926 48 H -0.005 1.005 49 H 0.056 0.944 50 H 0.250 0.750 51 H 0.014 0.986 52 H 0.064 0.936 53 H 0.100 0.900 54 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 23.610 20.373 34.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.097 0.903 4 C -0.187 4.187 5 C -0.193 4.193 6 C 0.019 3.981 7 H 0.105 0.895 8 C -0.134 4.134 9 C -0.165 4.165 10 C 0.294 3.706 11 O -0.472 6.472 12 N -0.369 5.369 13 C 0.004 3.996 14 C -0.073 4.073 15 N -0.270 5.270 16 C -0.079 4.079 17 C 0.058 3.942 18 N -0.338 5.338 19 C -0.396 4.396 20 H 0.088 0.912 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.015 3.985 28 C -0.071 4.071 29 O -0.311 6.311 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.066 0.934 46 H 0.042 0.958 47 H 0.092 0.908 48 H 0.013 0.987 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.032 0.968 52 H 0.082 0.918 53 H 0.119 0.881 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.151 22.265 20.607 33.911 hybrid contribution 1.556 0.021 -0.650 1.687 sum -13.595 22.286 19.956 32.859 Atomic orbital electron populations 1.21825 0.92876 1.02497 1.03171 1.23158 0.95767 0.95761 0.84850 0.90297 1.23008 0.97328 0.99926 0.98430 1.23014 0.99514 1.01360 0.95392 1.23063 0.84560 0.96776 0.93688 0.89477 1.21355 1.01785 0.96829 0.93393 1.21643 1.04683 0.95879 0.94337 1.21428 0.76076 0.90537 0.82537 1.90710 1.53714 1.29189 1.73545 1.45829 1.68452 1.14118 1.08515 1.21089 0.99201 0.89267 0.90066 1.22185 1.01702 0.91837 0.91547 1.61741 1.25334 1.35716 1.04194 1.22597 0.88568 0.97572 0.99129 1.20600 0.98788 0.92063 0.82709 1.44395 1.12824 1.73919 1.02667 1.19537 1.05367 1.13152 1.01562 0.91193 1.25835 1.03497 0.95104 1.00351 1.70194 1.35769 1.16615 1.35770 0.85299 0.79651 0.76828 0.78410 1.20373 1.22109 1.19915 1.21168 0.87152 0.93426 0.96726 1.22469 1.01169 0.96590 0.86842 1.89139 1.27675 1.74818 1.39458 0.89453 0.92125 0.92831 0.90885 0.88906 0.91497 0.89001 0.92744 0.90330 0.87105 0.86031 0.74496 0.93337 0.92670 0.88005 0.93445 0.95819 0.90780 0.98734 0.92579 0.94096 0.96800 0.91774 0.88135 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.52 71.98 0.68 -0.72 16 2 C 0.06 0.68 3.92 31.09 0.12 0.81 16 3 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 4 C -0.15 -1.38 6.63 31.61 0.21 -1.17 16 5 C -0.16 -1.73 6.63 31.61 0.21 -1.52 16 6 C 0.08 0.99 3.25 31.10 0.10 1.09 16 7 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 8 C -0.10 -1.61 4.13 30.59 0.13 -1.48 16 9 C -0.13 -1.82 5.64 29.85 0.17 -1.65 16 10 C 0.51 11.66 7.83 87.66 0.69 12.35 16 11 O -0.59 -19.87 15.98 -3.01 -0.05 -19.92 16 12 N -0.72 -13.92 5.56 -463.06 -2.57 -16.49 16 13 C 0.13 3.35 5.61 86.38 0.48 3.83 16 14 C 0.06 1.32 5.08 86.31 0.44 1.76 16 15 N -0.54 -18.34 4.63 -895.28 -4.14 -22.48 16 16 C 0.05 2.01 5.46 86.38 0.47 2.48 16 17 C 0.18 9.43 5.43 86.35 0.47 9.90 16 18 N -0.61 -31.98 3.04 -698.15 -2.12 -34.10 16 19 C -0.27 -14.96 9.63 84.03 0.81 -14.15 16 20 H 0.07 3.78 7.88 -2.92 -0.02 3.75 16 21 C -0.05 -3.01 4.93 84.86 0.42 -2.59 16 22 N -0.94 -57.17 11.15 21.65 0.24 -56.93 16 23 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 C 0.14 5.94 6.69 86.35 0.58 6.52 16 28 C 0.06 1.91 5.62 86.38 0.49 2.40 16 29 O -0.39 -6.32 10.82 -148.98 -1.61 -7.93 16 30 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.72 7.87 -2.39 -0.02 0.70 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.90 7.87 -2.39 -0.02 0.88 16 36 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 38 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 39 H 0.11 1.41 8.01 -2.39 -0.02 1.39 16 40 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.42 4.85 8.47 -92.71 -0.79 4.07 16 42 H 0.05 1.49 6.40 -2.39 -0.02 1.47 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.10 1.93 7.97 -2.39 -0.02 1.91 16 45 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 46 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 2.76 6.16 -2.39 -0.01 2.75 16 48 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.06 3.20 6.11 -2.39 -0.01 3.19 16 50 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 51 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 53 H 0.10 2.57 7.99 -2.39 -0.02 2.55 16 54 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -75.51 419.25 -1.69 -77.20 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.07 Total: 15.25 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.46 Total: 17.84 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -8.60 Total: -130.01 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.66 Total: -27.85 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.51 -1.69 -77.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266297091.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.207 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds