Wall clock time and date at job start Wed Apr 1 2020 00:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47168 * 2 1 4 4 O 1.21283 * 120.00363 * 359.97438 * 3 2 1 5 5 N 1.34784 * 119.99988 * 179.97438 * 3 2 1 6 6 C 1.46493 * 119.99864 * 179.72721 * 5 3 2 7 7 H 1.09003 * 109.47333 * 324.99821 * 6 5 3 8 8 C 1.52999 * 109.47638 * 84.99998 * 6 5 3 9 9 C 1.53000 * 109.47136 * 59.99350 * 8 6 5 10 10 C 1.53007 * 109.46876 * 60.00387 * 9 8 6 11 11 C 1.52996 * 109.46916 * 300.00120 * 10 9 8 12 12 H 1.09003 * 109.47116 * 299.99612 * 11 10 9 13 13 N 1.46903 * 109.47119 * 179.97438 * 11 10 9 14 14 C 1.46901 * 111.00017 * 84.99311 * 13 11 10 15 15 C 1.50695 * 109.47327 * 180.02562 * 14 13 11 16 16 O 1.21282 * 119.99880 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00183 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00158 * 0.02562 * 17 15 14 19 19 C 1.53000 * 109.47322 * 89.99769 * 18 17 15 20 20 C 1.46500 * 119.99843 * 180.02562 * 17 15 14 21 21 C 1.50698 * 109.47508 * 90.00274 * 20 17 15 22 22 H 1.08006 * 119.99514 * 359.97438 * 21 20 17 23 23 C 1.37877 * 120.00354 * 180.02562 * 21 20 17 24 24 N 1.31519 * 119.99921 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47353 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47172 * 119.99419 * 25 23 21 28 28 H 1.48503 * 109.47182 * 239.99762 * 25 23 21 29 29 C 1.53000 * 109.47446 * 60.00229 * 11 10 9 30 30 H 1.09000 * 109.47339 * 299.99895 * 1 2 3 31 31 H 1.09002 * 109.46926 * 60.00175 * 1 2 3 32 32 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46837 * 240.00021 * 2 1 3 34 34 H 1.09002 * 109.46926 * 119.99825 * 2 1 3 35 35 H 0.97000 * 119.99339 * 0.02562 * 5 3 2 36 36 H 1.08994 * 109.47399 * 179.97438 * 8 6 5 37 37 H 1.09003 * 109.46886 * 300.00173 * 8 6 5 38 38 H 1.09003 * 109.47466 * 300.00584 * 9 8 6 39 39 H 1.09004 * 109.47221 * 179.97438 * 9 8 6 40 40 H 1.08996 * 109.47219 * 179.97438 * 10 9 8 41 41 H 1.09003 * 109.46912 * 59.99857 * 10 9 8 42 42 H 1.00903 * 110.99978 * 321.04928 * 13 11 10 43 43 H 1.08997 * 109.47411 * 300.00433 * 14 13 11 44 44 H 1.09007 * 109.46692 * 60.00346 * 14 13 11 45 45 H 1.09000 * 109.47225 * 210.00292 * 18 17 15 46 46 H 1.09006 * 109.47164 * 330.00210 * 18 17 15 47 47 H 1.08994 * 109.47170 * 180.02562 * 19 18 17 48 48 H 1.09005 * 109.46962 * 300.00542 * 19 18 17 49 49 H 1.09000 * 109.47044 * 60.00003 * 19 18 17 50 50 H 1.09003 * 109.47041 * 210.00130 * 20 17 15 51 51 H 1.09002 * 109.47436 * 329.99550 * 20 17 15 52 52 H 0.96995 * 119.99771 * 180.02562 * 24 23 21 53 53 H 1.09004 * 109.47221 * 180.02562 * 29 11 10 54 54 H 1.08994 * 109.47255 * 59.99752 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0482 -0.0055 7 1 3.1740 3.6685 -0.5989 8 6 3.8954 3.5780 1.4290 9 6 4.8383 2.7073 2.2619 10 6 6.2418 2.7493 1.6538 11 6 6.1921 2.2196 0.2194 12 1 5.8287 1.1919 0.2239 13 7 7.5394 2.2605 -0.3647 14 6 8.3025 1.0555 -0.0129 15 6 9.6761 1.1334 -0.6277 16 8 9.9888 2.0981 -1.2930 17 7 10.5571 0.1312 -0.4383 18 6 10.1792 -1.0343 0.3648 19 6 9.5548 -2.0973 -0.5413 20 6 11.8927 0.2073 -1.0356 21 6 12.8361 0.8807 -0.0725 22 1 12.4766 1.2187 0.8883 23 6 14.1578 1.0664 -0.4183 24 7 14.5954 0.6554 -1.5884 25 14 15.3269 1.9018 0.7753 26 1 14.5928 2.2675 2.0133 27 1 16.4361 0.9739 1.1129 28 1 15.8813 3.1286 0.1484 29 6 5.2492 3.0903 -0.6135 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9877 0.9297 0.0005 36 1 4.2592 4.6054 1.4245 37 1 2.8956 3.5480 1.8621 38 1 4.4750 1.6796 2.2664 39 1 4.8741 3.0850 3.2838 40 1 6.9136 2.1294 2.2474 41 1 6.6051 3.7770 1.6493 42 1 8.0310 3.0950 -0.0817 43 1 8.3933 0.9865 1.0710 44 1 7.7843 0.1741 -0.3910 45 1 11.0653 -1.4446 0.8491 46 1 9.4566 -0.7338 1.1236 47 1 9.2732 -2.9642 0.0563 48 1 8.6687 -1.6869 -1.0256 49 1 10.2773 -2.3978 -1.3001 50 1 12.2517 -0.7988 -1.2522 51 1 11.8451 0.7829 -1.9600 52 1 15.5253 0.7857 -1.8315 53 1 5.2135 2.7126 -1.6354 54 1 5.6126 4.1179 -0.6181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001437329125.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:52 Heat of formation + Delta-G solvation = -117.412925 kcal Electronic energy + Delta-G solvation = -30456.795383 eV Core-core repulsion = 26426.460380 eV Total energy + Delta-G solvation = -4030.335003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33396 -40.66063 -39.37761 -36.97004 -36.16636 -34.89315 -34.21342 -33.47227 -31.66214 -31.20622 -30.42594 -29.09604 -26.77485 -25.48157 -24.63932 -23.84653 -23.37142 -22.58897 -21.58773 -20.37241 -19.75472 -18.61705 -18.25127 -17.87928 -17.37641 -16.87757 -16.66394 -16.52197 -16.33700 -16.10298 -15.42520 -15.32816 -14.91104 -14.83550 -14.65591 -14.59464 -14.29024 -14.00361 -13.79036 -13.57975 -13.47290 -13.35882 -13.25185 -13.19472 -13.05170 -12.88525 -12.82638 -12.66942 -12.59703 -12.45674 -12.18014 -12.12218 -11.98708 -11.86165 -11.70991 -11.67563 -11.41274 -11.20921 -10.79504 -10.64902 -10.51764 -10.00999 -9.39324 -9.27041 -8.21863 -6.36684 1.35638 1.38242 1.49591 1.73330 1.91163 2.27406 2.31305 2.42908 3.07323 3.18076 3.73303 3.74044 3.82297 3.88559 4.02314 4.12515 4.18915 4.19239 4.26899 4.31509 4.37407 4.41650 4.43036 4.51512 4.56930 4.63483 4.67702 4.71683 4.78001 4.87311 4.97210 5.02865 5.03155 5.05964 5.08621 5.10070 5.11972 5.14494 5.24622 5.27074 5.34986 5.37868 5.38215 5.43562 5.59738 5.63171 5.87770 6.05337 6.08351 6.33980 6.63467 6.72418 6.87836 7.29936 7.35049 7.56743 8.85135 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.002183 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.435741 B =12822.181788 C =13561.630011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.590 6.590 5 N -0.713 5.713 6 C 0.153 3.847 7 H 0.069 0.931 8 C -0.126 4.126 9 C -0.103 4.103 10 C -0.148 4.148 11 C 0.096 3.904 12 H 0.095 0.905 13 N -0.684 5.684 14 C 0.059 3.941 15 C 0.492 3.508 16 O -0.589 6.589 17 N -0.605 5.605 18 C 0.100 3.900 19 C -0.161 4.161 20 C 0.263 3.737 21 C -0.538 4.538 22 H 0.054 0.946 23 C 0.004 3.996 24 N -0.929 5.929 25 Si 0.968 3.032 26 H -0.266 1.266 27 H -0.270 1.270 28 H -0.283 1.283 29 C -0.107 4.107 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.412 0.588 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.343 0.657 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.020 0.980 51 H -0.007 1.007 52 H 0.266 0.734 53 H 0.070 0.930 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.591 -5.519 9.298 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.294 3.706 4 O -0.471 6.471 5 N -0.366 5.366 6 C 0.048 3.952 7 H 0.087 0.913 8 C -0.165 4.165 9 C -0.142 4.142 10 C -0.187 4.187 11 C -0.013 4.013 12 H 0.113 0.887 13 N -0.315 5.315 14 C -0.072 4.072 15 C 0.280 3.720 16 O -0.469 6.469 17 N -0.337 5.337 18 C -0.023 4.023 19 C -0.219 4.219 20 C 0.141 3.859 21 C -0.577 4.577 22 H 0.072 0.928 23 C -0.195 4.195 24 N -0.569 5.569 25 Si 0.792 3.208 26 H -0.190 1.190 27 H -0.195 1.195 28 H -0.209 1.209 29 C -0.146 4.146 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.162 0.838 43 H 0.097 0.903 44 H 0.141 0.859 45 H 0.087 0.913 46 H 0.121 0.879 47 H 0.115 0.885 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.038 0.962 51 H 0.011 0.989 52 H 0.075 0.925 53 H 0.089 0.911 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.994 -4.657 8.223 27.659 hybrid contribution 1.726 0.661 0.882 2.048 sum -24.268 -3.996 9.105 26.226 Atomic orbital electron populations 1.21526 0.93879 1.02428 1.01708 1.21707 0.97925 0.91846 1.06550 1.21448 0.82113 0.92774 0.74310 1.90682 1.56504 1.48269 1.51647 1.46120 1.06990 1.08868 1.74605 1.20803 0.94554 0.83378 0.96489 0.91267 1.21868 0.99562 1.00073 0.94991 1.21359 0.93545 1.00572 0.98684 1.22288 0.97988 1.01755 0.96682 1.21592 0.87857 1.00373 0.91520 0.88743 1.60236 1.03496 1.04044 1.63696 1.21848 0.89833 0.96231 0.99317 1.21378 0.87715 0.81983 0.80896 1.90646 1.79896 1.34011 1.42338 1.48284 1.13960 1.20238 1.51230 1.21748 1.00936 0.85715 0.93857 1.22157 1.00443 0.99169 1.00131 1.18658 0.78953 0.95546 0.92756 1.21735 0.94674 1.38858 1.02405 0.92809 1.25888 1.00111 0.96240 0.97214 1.70066 1.16646 1.48000 1.22212 0.85364 0.78509 0.78128 0.78763 1.18974 1.19497 1.20938 1.21698 0.92149 1.01356 0.99403 0.93565 0.93792 0.89914 0.86781 0.86416 0.75075 0.90912 0.92828 0.90971 0.91581 0.91429 0.92181 0.83767 0.90334 0.85906 0.91296 0.87941 0.88529 0.91837 0.94680 0.96241 0.98862 0.92486 0.91142 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.20 71.98 0.66 -0.92 16 2 C -0.14 -1.23 6.42 29.85 0.19 -1.04 16 3 C 0.51 8.26 7.79 87.65 0.68 8.95 16 4 O -0.59 -15.28 15.65 -3.04 -0.05 -15.33 16 5 N -0.71 -9.00 4.23 -442.53 -1.87 -10.87 16 6 C 0.15 2.40 2.78 44.99 0.13 2.53 16 7 H 0.07 1.39 7.58 -2.39 -0.02 1.38 16 8 C -0.13 -1.89 5.60 30.59 0.17 -1.72 16 9 C -0.10 -1.26 5.77 30.60 0.18 -1.08 16 10 C -0.15 -2.07 5.17 30.60 0.16 -1.91 16 11 C 0.10 1.47 2.30 44.91 0.10 1.57 16 12 H 0.09 1.05 6.17 -2.39 -0.01 1.03 16 13 N -0.68 -16.34 5.87 -495.57 -2.91 -19.25 16 14 C 0.06 1.44 4.52 85.56 0.39 1.83 16 15 C 0.49 19.43 7.71 87.66 0.68 20.11 16 16 O -0.59 -30.05 15.78 -3.04 -0.05 -30.10 16 17 N -0.61 -24.58 2.46 -826.16 -2.03 -26.61 16 18 C 0.10 2.78 5.93 86.38 0.51 3.29 16 19 C -0.16 -3.56 10.24 71.98 0.74 -2.82 16 20 C 0.26 14.09 5.16 85.63 0.44 14.53 16 21 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 22 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 23 C 0.00 0.24 5.46 84.65 0.46 0.70 16 24 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 25 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 29 C -0.11 -1.74 5.21 30.60 0.16 -1.58 16 30 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 31 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.41 3.13 6.87 -92.71 -0.64 2.49 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.74 7.60 -2.39 -0.02 0.72 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.93 7.45 -2.39 -0.02 0.91 16 41 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 42 H 0.34 9.49 8.17 -89.69 -0.73 8.75 16 43 H 0.08 1.54 6.70 -2.39 -0.02 1.53 16 44 H 0.12 2.28 7.10 -2.38 -0.02 2.26 16 45 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 46 H 0.10 2.03 6.44 -2.38 -0.02 2.02 16 47 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.06 1.25 7.22 -2.38 -0.02 1.24 16 49 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 51 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 52 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 53 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 54 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -81.15 423.52 0.80 -80.35 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.48 Total: 19.29 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.89 Total: 11.88 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -6.53 Total: -112.88 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -0.10 Total: -45.43 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -81.15 0.80 -80.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001437329125.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.065 kcal (2) G-P(sol) polarization free energy of solvation -81.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds