Wall clock time and date at job start Wed Apr 1 2020 00:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.46496 * 120.00271 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.52054 * 324.87101 * 6 5 3 8 8 C 1.53117 * 109.52282 * 84.99782 * 6 5 3 9 9 C 1.53038 * 109.27592 * 177.56207 * 8 6 5 10 10 N 1.46849 * 109.52258 * 300.81592 * 9 8 6 11 11 C 1.46904 * 111.00059 * 185.84159 * 10 9 8 12 12 C 1.50703 * 109.47042 * 293.95649 * 11 10 9 13 13 O 1.21288 * 120.00284 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00104 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99910 * 0.02562 * 14 12 11 16 16 C 1.53001 * 109.47047 * 89.99711 * 15 14 12 17 17 C 1.46498 * 119.99980 * 179.97438 * 14 12 11 18 18 C 1.50705 * 109.47135 * 90.00536 * 17 14 12 19 19 H 1.08002 * 119.99440 * 359.97438 * 18 17 14 20 20 C 1.37868 * 120.00166 * 179.97438 * 18 17 14 21 21 N 1.31517 * 120.00330 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99978 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46948 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47080 * 120.00336 * 22 20 18 25 25 H 1.48498 * 109.47328 * 240.00329 * 22 20 18 26 26 C 1.46848 * 111.19421 * 61.74469 * 10 9 8 27 27 H 1.09004 * 109.46100 * 58.27402 * 26 10 9 28 28 C 1.52998 * 109.46079 * 178.23807 * 26 10 9 29 29 C 1.53028 * 109.52356 * 298.25511 * 26 10 9 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 35 35 H 0.97005 * 119.99463 * 359.97438 * 5 3 2 36 36 H 1.08999 * 109.50095 * 297.49553 * 8 6 5 37 37 H 1.08995 * 109.50712 * 57.58062 * 8 6 5 38 38 H 1.09003 * 109.46532 * 60.83662 * 9 8 6 39 39 H 1.09002 * 109.46516 * 180.81294 * 9 8 6 40 40 H 1.08999 * 109.46790 * 53.95059 * 11 10 9 41 41 H 1.08998 * 109.47281 * 173.95901 * 11 10 9 42 42 H 1.08998 * 109.46969 * 209.99410 * 15 14 12 43 43 H 1.08992 * 109.46860 * 330.00091 * 15 14 12 44 44 H 1.08994 * 109.47113 * 179.97438 * 16 15 14 45 45 H 1.09004 * 109.47398 * 300.00263 * 16 15 14 46 46 H 1.09002 * 109.47305 * 60.00030 * 16 15 14 47 47 H 1.09004 * 109.47283 * 209.99885 * 17 14 12 48 48 H 1.08995 * 109.47921 * 330.00390 * 17 14 12 49 49 H 0.96998 * 120.00063 * 179.97438 * 21 20 18 50 50 H 1.09004 * 109.47057 * 60.00118 * 28 26 10 51 51 H 1.09000 * 109.47197 * 179.97438 * 28 26 10 52 52 H 1.09000 * 109.47748 * 300.00400 * 28 26 10 53 53 H 1.08995 * 109.51008 * 299.23927 * 29 26 10 54 54 H 1.09004 * 109.50301 * 179.11970 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1746 3.6722 -0.5904 8 6 3.8983 3.5719 1.4380 9 6 4.4662 4.9930 1.4377 10 7 5.8127 4.9833 0.8518 11 6 6.4439 6.3053 0.9610 12 6 5.6896 7.2940 0.1098 13 8 4.7211 6.9331 -0.5250 14 7 6.0904 8.5796 0.0546 15 6 7.2598 9.0158 0.8218 16 6 8.5192 8.8537 -0.0319 17 6 5.3574 9.5405 -0.7733 18 6 4.2657 10.1795 0.0460 19 1 4.1312 9.8975 1.0798 20 6 3.4389 11.1239 -0.5243 21 7 3.6024 11.4668 -1.7834 22 14 2.0853 11.9153 0.4911 23 1 2.1109 11.3606 1.8683 24 1 2.3012 13.3835 0.5452 25 1 0.7680 11.6315 -0.1330 26 6 5.7809 4.5290 -0.5443 27 1 5.1272 5.1810 -1.1236 28 6 7.1944 4.5759 -1.1279 29 6 5.2523 3.0941 -0.6032 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.9877 0.9299 -0.0005 36 1 2.8928 3.5820 1.8586 37 1 4.5373 2.9241 2.0380 38 1 3.8186 5.6429 0.8491 39 1 4.5185 5.3634 2.4616 40 1 6.4249 6.6322 2.0007 41 1 7.4767 6.2443 0.6180 42 1 7.1418 10.0630 1.1001 43 1 7.3507 8.4085 1.7223 44 1 9.3891 9.1787 0.5387 45 1 8.6372 7.8065 -0.3103 46 1 8.4283 9.4610 -0.9325 47 1 6.0423 10.3102 -1.1292 48 1 4.9167 9.0239 -1.6258 49 1 3.0204 12.1310 -2.1846 50 1 7.8486 3.9243 -0.5485 51 1 7.1711 4.2383 -2.1640 52 1 7.5708 5.5980 -1.0868 53 1 5.9131 2.4391 -0.0355 54 1 5.2141 2.7627 -1.6409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484972854.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:38 Heat of formation + Delta-G solvation = -102.309778 kcal Electronic energy + Delta-G solvation = -31514.620604 eV Core-core repulsion = 27484.940523 eV Total energy + Delta-G solvation = -4029.680081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68951 -40.79523 -39.22884 -37.00236 -36.06485 -34.95331 -33.87393 -33.38692 -32.58334 -31.58686 -29.68284 -28.27932 -27.49065 -25.63584 -24.76736 -24.08214 -23.72058 -22.34999 -21.43462 -20.81845 -19.77644 -18.66877 -18.21389 -17.86368 -17.33492 -17.08667 -16.79554 -16.58184 -16.38844 -16.25021 -15.73156 -15.35914 -14.98239 -14.92184 -14.68439 -14.51386 -14.28732 -14.05477 -13.87256 -13.61499 -13.31575 -13.17414 -13.16722 -13.07151 -12.99171 -12.82298 -12.74172 -12.67193 -12.65597 -12.51511 -12.21319 -12.11103 -12.03170 -11.90116 -11.81677 -11.74173 -11.56155 -11.49246 -11.12779 -10.80270 -10.69854 -10.07135 -9.42513 -9.08574 -8.27202 -6.41906 1.29784 1.33096 1.44129 1.67016 1.82156 2.20106 2.28648 2.45908 2.85747 3.02080 3.66532 3.74499 3.80590 3.84932 3.99967 4.10240 4.15648 4.21702 4.27735 4.33999 4.43599 4.45089 4.48644 4.51732 4.55250 4.64545 4.69661 4.75379 4.81314 4.87424 4.92277 4.94612 4.97162 5.00628 5.02710 5.04641 5.05695 5.07416 5.18001 5.20345 5.21815 5.32878 5.40581 5.44911 5.53033 5.57025 5.85147 5.93792 6.03051 6.05823 6.61784 6.66571 6.82328 7.24956 7.34008 7.50932 8.79666 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.003199 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.573608 B = 8750.698555 C =10677.005866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.497 3.503 4 O -0.599 6.599 5 N -0.710 5.710 6 C 0.146 3.854 7 H 0.034 0.966 8 C -0.106 4.106 9 C 0.045 3.955 10 N -0.489 5.489 11 C 0.040 3.960 12 C 0.465 3.535 13 O -0.587 6.587 14 N -0.603 5.603 15 C 0.098 3.902 16 C -0.160 4.160 17 C 0.264 3.736 18 C -0.538 4.538 19 H 0.050 0.950 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.265 1.265 25 H -0.285 1.285 26 C 0.054 3.946 27 H 0.039 0.961 28 C -0.136 4.136 29 C -0.098 4.098 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.420 0.580 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.016 0.984 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.018 0.982 48 H -0.009 1.009 49 H 0.267 0.733 50 H 0.088 0.912 51 H 0.064 0.936 52 H 0.043 0.957 53 H 0.105 0.895 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.698 -24.421 7.506 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.286 3.714 4 O -0.479 6.479 5 N -0.362 5.362 6 C 0.041 3.959 7 H 0.053 0.947 8 C -0.145 4.145 9 C -0.084 4.084 10 N -0.211 5.211 11 C -0.091 4.091 12 C 0.253 3.747 13 O -0.469 6.469 14 N -0.335 5.335 15 C -0.024 4.024 16 C -0.218 4.218 17 C 0.143 3.857 18 C -0.577 4.577 19 H 0.068 0.932 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.190 1.190 25 H -0.211 1.211 26 C -0.055 4.055 27 H 0.057 0.943 28 C -0.194 4.194 29 C -0.136 4.136 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.258 0.742 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.034 0.966 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.009 0.991 49 H 0.075 0.925 50 H 0.107 0.893 51 H 0.083 0.917 52 H 0.062 0.938 53 H 0.123 0.877 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.889 -24.188 7.308 27.135 hybrid contribution -1.636 1.787 -0.638 2.506 sum 8.253 -22.401 6.669 24.787 Atomic orbital electron populations 1.21554 0.94175 1.02607 1.01456 1.21689 0.97643 0.90861 1.06986 1.21765 0.82189 0.93183 0.74311 1.90734 1.56809 1.48820 1.51558 1.45956 1.07154 1.08348 1.74758 1.20795 0.95744 0.83063 0.96319 0.94743 1.21761 1.00137 0.95768 0.96807 1.22127 0.89786 0.97042 0.99426 1.62622 1.19115 1.21692 1.17691 1.22557 0.99856 0.86151 1.00552 1.22722 0.85040 0.83869 0.83069 1.90588 1.30120 1.78465 1.47724 1.48460 1.29694 1.08974 1.46337 1.21761 0.84170 1.01553 0.94947 1.22147 0.97349 1.02141 1.00123 1.18612 0.90695 0.86554 0.89887 1.21715 1.16176 1.22114 0.97686 0.93177 1.25846 0.99881 0.97317 0.96163 1.70055 1.40247 1.33137 1.13414 0.85414 0.78369 0.78601 0.78725 1.19182 1.19035 1.21067 1.21929 0.98601 0.95996 0.88974 0.94336 1.21817 0.94612 1.01887 1.01052 1.21755 0.93702 0.96412 1.01732 0.93966 0.94233 0.89204 0.85813 0.86119 0.74226 0.93526 0.88477 0.96603 0.90104 0.86328 0.84879 0.91350 0.87920 0.88486 0.91830 0.94639 0.96353 0.99087 0.92459 0.89341 0.91746 0.93791 0.87677 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.20 71.98 0.66 -1.63 16 2 C -0.13 -1.69 6.42 29.85 0.19 -1.49 16 3 C 0.50 11.75 7.80 87.66 0.68 12.43 16 4 O -0.60 -21.87 15.65 -3.02 -0.05 -21.91 16 5 N -0.71 -13.49 5.08 -442.17 -2.25 -15.74 16 6 C 0.15 3.86 2.52 45.07 0.11 3.97 16 7 H 0.03 1.30 7.58 -2.39 -0.02 1.28 16 8 C -0.11 -2.82 5.67 30.65 0.17 -2.65 16 9 C 0.04 1.42 5.09 86.33 0.44 1.86 16 10 N -0.49 -13.24 4.69 -875.64 -4.11 -17.35 16 11 C 0.04 1.10 3.86 85.56 0.33 1.43 16 12 C 0.46 19.00 6.93 87.66 0.61 19.61 16 13 O -0.59 -30.21 11.20 -3.05 -0.03 -30.25 16 14 N -0.60 -25.56 2.46 -826.15 -2.03 -27.59 16 15 C 0.10 2.93 5.93 86.38 0.51 3.44 16 16 C -0.16 -3.79 10.24 71.98 0.74 -3.05 16 17 C 0.26 14.65 5.16 85.63 0.44 15.10 16 18 C -0.54 -32.07 9.39 25.60 0.24 -31.83 16 19 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.93 -58.06 13.29 21.44 0.28 -57.77 16 22 Si 0.96 46.85 29.54 68.60 2.03 48.88 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 26 C 0.05 1.49 1.95 44.93 0.09 1.58 16 27 H 0.04 1.54 5.36 -2.38 -0.01 1.53 16 28 C -0.14 -2.94 8.76 71.98 0.63 -2.31 16 29 C -0.10 -2.07 4.85 30.64 0.15 -1.92 16 30 H 0.04 0.84 8.10 -2.39 -0.02 0.83 16 31 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.12 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.42 4.15 8.60 -92.70 -0.80 3.35 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 0.68 6.00 -2.39 -0.01 0.66 16 39 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 40 H 0.12 2.77 7.32 -2.39 -0.02 2.75 16 41 H 0.13 2.85 5.37 -2.39 -0.01 2.84 16 42 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 43 H 0.10 2.30 6.44 -2.39 -0.02 2.28 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.35 7.22 -2.38 -0.02 1.33 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.02 1.04 8.07 -2.38 -0.02 1.02 16 48 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 49 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 50 H 0.09 1.41 8.14 -2.38 -0.02 1.40 16 51 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.04 1.04 6.24 -2.39 -0.01 1.03 16 53 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 54 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -87.47 416.10 0.38 -87.08 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.08 Total: 19.25 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.46 Total: 15.40 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -8.10 Total: -118.44 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.08 Total: -52.16 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -87.47 0.38 -87.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484972854.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.228 kcal (2) G-P(sol) polarization free energy of solvation -87.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds