Wall clock time and date at job start Wed Apr 1 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 110.43914 * 2 1 4 4 C 1.54893 * 110.48470 * 237.31397 * 2 1 3 5 5 C 1.54964 * 102.77691 * 203.40622 * 4 2 1 6 6 C 1.54270 * 104.16117 * 37.89349 * 5 4 2 7 7 H 1.08998 * 110.03355 * 95.74595 * 6 5 4 8 8 C 1.52996 * 110.03120 * 217.13404 * 6 5 4 9 9 C 1.50698 * 109.47220 * 292.90160 * 8 6 5 10 10 O 1.21280 * 120.00130 * 0.02562 * 9 8 6 11 11 N 1.34770 * 120.00236 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00217 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47210 * 179.97438 * 13 12 11 15 15 N 1.46903 * 109.47073 * 179.97438 * 14 13 12 16 16 C 1.46901 * 110.99788 * 293.95231 * 15 14 13 17 17 C 1.46901 * 110.99790 * 170.00177 * 15 14 13 18 18 C 1.50701 * 109.46921 * 189.99765 * 17 15 14 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 15 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46986 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47457 * 119.99901 * 25 23 21 28 28 H 1.48501 * 109.47104 * 239.99973 * 25 23 21 29 29 C 1.53882 * 106.63572 * 336.44300 * 6 5 4 30 30 H 1.08997 * 109.46815 * 297.46253 * 1 2 3 31 31 H 1.09010 * 109.46763 * 57.45439 * 1 2 3 32 32 H 1.08996 * 109.47453 * 177.45812 * 1 2 3 33 33 H 1.08992 * 110.76098 * 321.69826 * 4 2 1 34 34 H 1.09001 * 110.75205 * 84.88440 * 4 2 1 35 35 H 1.08996 * 110.48313 * 279.23648 * 5 4 2 36 36 H 1.09005 * 110.52887 * 156.56768 * 5 4 2 37 37 H 1.09003 * 109.46852 * 172.90517 * 8 6 5 38 38 H 1.08993 * 109.47411 * 52.90683 * 8 6 5 39 39 H 0.97005 * 120.00216 * 0.02562 * 11 9 8 40 40 H 1.08993 * 109.47148 * 60.00113 * 12 11 9 41 41 H 1.08997 * 109.47149 * 299.99579 * 12 11 9 42 42 H 1.09003 * 109.47182 * 59.99791 * 13 12 11 43 43 H 1.09002 * 109.47222 * 300.00099 * 13 12 11 44 44 H 1.09003 * 109.47179 * 59.99837 * 14 13 12 45 45 H 1.08993 * 109.47094 * 299.99998 * 14 13 12 46 46 H 1.09001 * 109.47121 * 296.04690 * 16 15 14 47 47 H 1.09005 * 109.47342 * 56.04784 * 16 15 14 48 48 H 1.08999 * 109.46894 * 176.04703 * 16 15 14 49 49 H 1.09002 * 109.47401 * 69.99793 * 17 15 14 50 50 H 1.09001 * 109.46874 * 309.99805 * 17 15 14 51 51 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 52 52 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 53 53 H 1.09000 * 110.02839 * 119.26375 * 29 6 5 54 54 H 1.08998 * 110.02600 * 240.64164 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0720 -0.7836 -1.2212 5 6 3.4912 -1.2001 -0.7587 6 6 3.3165 -1.5398 0.7360 7 1 3.1693 -2.6126 0.8604 8 6 4.5465 -1.0849 1.5240 9 6 5.7383 -1.9123 1.1167 10 8 5.6161 -2.7801 0.2783 11 7 6.9402 -1.6874 1.6833 12 6 8.0989 -2.4914 1.2870 13 6 9.3290 -2.0365 2.0752 14 6 10.5390 -2.8766 1.6617 15 7 11.7201 -2.4395 2.4180 16 6 12.1034 -1.0699 2.0502 17 6 12.8412 -3.3693 2.2270 18 6 13.9438 -3.0327 3.1976 19 8 13.8087 -2.1094 3.9725 20 7 15.0797 -3.7583 3.2052 21 6 16.0825 -3.4524 4.0885 22 1 15.9625 -2.6298 4.7780 23 6 17.2536 -4.2000 4.0960 24 7 17.3999 -5.2006 3.2568 25 14 18.6198 -3.7838 5.3001 26 1 18.2106 -2.6231 6.1310 27 1 18.8803 -4.9535 6.1769 28 1 19.8548 -3.4434 4.5490 29 6 2.0698 -0.7774 1.2182 30 1 -0.3633 0.4739 0.9119 31 1 -0.3633 0.5529 -0.8664 32 1 -0.3634 -1.0266 -0.0456 33 1 1.4580 -1.6618 -1.4203 34 1 2.1220 -0.1417 -2.1007 35 1 4.1907 -0.3735 -0.8828 36 1 3.8318 -2.0757 -1.3115 37 1 4.3624 -1.2133 2.5907 38 1 4.7447 -0.0340 1.3135 39 1 7.0381 -0.9930 2.3537 40 1 8.2826 -2.3629 0.2203 41 1 7.9011 -3.5423 1.4977 42 1 9.1451 -2.1653 3.1418 43 1 9.5270 -0.9855 1.8649 44 1 10.7230 -2.7483 0.5950 45 1 10.3407 -3.9275 1.8723 46 1 12.4032 -1.0454 1.0025 47 1 11.2551 -0.4022 2.2011 48 1 12.9363 -0.7458 2.6741 49 1 13.2159 -3.2821 1.2071 50 1 12.5010 -4.3897 2.4031 51 1 15.1875 -4.4968 2.5857 52 1 18.2173 -5.7227 3.2623 53 1 1.3175 -1.4804 1.5759 54 1 2.3410 -0.0841 2.0143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689823655.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:58 Heat of formation + Delta-G solvation = -121.723989 kcal Electronic energy + Delta-G solvation = -28408.633958 eV Core-core repulsion = 24378.112013 eV Total energy + Delta-G solvation = -4030.521945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98122 -40.36903 -39.15928 -38.23196 -36.22144 -35.75518 -33.61616 -33.27491 -32.50540 -30.52178 -29.38916 -28.37785 -27.29333 -26.42811 -25.05411 -23.75862 -22.10586 -21.53431 -20.97140 -20.96599 -20.20503 -19.84237 -18.08651 -17.84983 -17.08268 -17.01466 -16.57075 -16.52006 -16.41086 -16.04220 -15.89991 -15.59379 -15.26194 -15.01030 -14.86729 -14.44017 -14.33388 -14.11042 -13.76979 -13.73015 -13.49462 -13.47035 -13.13390 -13.01380 -12.80625 -12.70479 -12.57855 -12.50884 -12.37750 -12.31403 -12.10471 -11.97069 -11.66430 -11.63488 -11.61240 -11.52260 -11.45494 -11.42908 -11.21758 -10.73858 -10.26883 -10.04396 -9.98773 -9.19322 -8.45596 -5.94158 1.37151 1.42362 1.56478 1.72000 2.06799 2.20404 2.31153 2.83043 3.21494 3.43878 3.64293 3.68526 3.80509 3.96866 3.98855 4.10560 4.15918 4.22542 4.33830 4.36206 4.41105 4.49575 4.55642 4.58757 4.60754 4.62307 4.65315 4.67965 4.75741 4.76050 4.79121 4.81438 4.83701 4.98330 5.03259 5.10518 5.14452 5.20114 5.20462 5.24070 5.30435 5.37370 5.40577 5.42571 5.50849 5.58687 5.60764 5.89489 6.08304 6.23455 6.61840 6.62276 7.14492 7.32993 7.58087 8.13936 8.72126 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.048193 B = 0.001270 C = 0.001258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.860732 B =22049.926799 C =22259.096606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.077 4.077 7 H 0.057 0.943 8 C -0.128 4.128 9 C 0.504 3.496 10 O -0.583 6.583 11 N -0.723 5.723 12 C 0.128 3.872 13 C -0.113 4.113 14 C 0.057 3.943 15 N -0.537 5.537 16 C 0.024 3.976 17 C 0.056 3.944 18 C 0.441 3.559 19 O -0.614 6.614 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.271 1.271 29 C -0.113 4.113 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.415 0.585 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.025 0.975 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.066 0.934 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.061 9.557 -7.411 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.096 4.096 7 H 0.076 0.924 8 C -0.168 4.168 9 C 0.293 3.707 10 O -0.463 6.463 11 N -0.376 5.376 12 C 0.003 3.997 13 C -0.151 4.151 14 C -0.071 4.071 15 N -0.261 5.261 16 C -0.123 4.123 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.150 4.150 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.252 0.748 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.043 0.957 47 H 0.104 0.896 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.127 0.873 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.085 0.915 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -31.191 9.417 -7.013 33.328 hybrid contribution 1.489 -0.339 -0.459 1.594 sum -29.703 9.078 -7.472 31.945 Atomic orbital electron populations 1.21802 0.94599 1.01724 1.02010 1.21969 0.95790 0.99275 0.94383 0.90273 1.22612 0.95652 0.99699 0.98009 1.22339 0.97009 1.00106 0.95625 1.21492 0.93773 0.99660 0.94636 0.92447 1.21905 0.91116 1.00738 1.03026 1.21362 0.85094 0.83791 0.80493 1.90690 1.85607 1.35536 1.34463 1.46004 1.08434 1.39129 1.44004 1.21130 0.84658 0.95168 0.98739 1.21624 0.92040 1.00512 1.00914 1.22088 0.89224 1.00211 0.95550 1.61518 1.04605 1.02334 1.57645 1.22475 1.02133 0.89747 0.97979 1.21754 0.90607 0.98368 0.96745 1.20784 0.84216 0.84596 0.87525 1.90455 1.81439 1.33300 1.44780 1.41947 1.14354 1.30639 1.34340 1.19702 0.95492 1.15626 1.15277 0.90272 1.26019 1.00399 0.95363 0.99453 1.69683 1.28977 1.19901 1.37758 0.84880 0.77443 0.78267 0.77809 1.19714 1.19681 1.19670 1.22294 0.95847 0.98900 0.98004 0.92038 0.92563 0.92976 0.92049 0.91490 0.92089 0.93605 0.86636 0.86694 0.74809 0.92315 0.92373 0.90471 0.90342 0.93817 0.89956 0.95655 0.89573 0.92724 0.91642 0.87344 0.77094 0.91367 0.91538 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.12 71.98 0.66 -0.51 16 2 C -0.10 -0.90 3.46 -9.72 -0.03 -0.93 16 3 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.12 -1.51 6.33 31.91 0.20 -1.31 16 5 C -0.11 -1.77 5.40 31.70 0.17 -1.60 16 6 C -0.08 -1.02 2.55 -10.07 -0.03 -1.05 16 7 H 0.06 1.02 7.95 -2.39 -0.02 1.00 16 8 C -0.13 -1.32 4.83 29.85 0.14 -1.17 16 9 C 0.50 8.97 7.61 87.66 0.67 9.63 16 10 O -0.58 -15.65 14.78 -3.03 -0.04 -15.70 16 11 N -0.72 -10.40 5.56 -463.08 -2.57 -12.97 16 12 C 0.13 2.21 5.67 86.38 0.49 2.70 16 13 C -0.11 -1.97 5.26 30.60 0.16 -1.81 16 14 C 0.06 1.27 4.96 86.30 0.43 1.69 16 15 N -0.54 -16.67 4.50 -927.03 -4.17 -20.85 16 16 C 0.02 0.75 9.01 127.69 1.15 1.90 16 17 C 0.06 1.95 5.45 85.56 0.47 2.42 16 18 C 0.44 21.00 7.51 87.66 0.66 21.66 16 19 O -0.61 -33.62 13.89 -3.07 -0.04 -33.67 16 20 N -0.58 -29.60 5.29 -306.98 -1.62 -31.23 16 21 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 24 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 25 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 C -0.11 -1.03 6.03 31.32 0.19 -0.84 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.05 0.46 8.12 -2.39 -0.02 0.44 16 33 H 0.06 0.81 8.04 -2.39 -0.02 0.79 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.92 7.77 -2.39 -0.02 0.90 16 36 H 0.05 0.96 7.63 -2.38 -0.02 0.95 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.72 8.02 -2.39 -0.02 0.70 16 39 H 0.42 3.58 8.47 -92.70 -0.79 2.79 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.27 6.47 -2.39 -0.02 1.25 16 44 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 45 H 0.08 1.73 7.93 -2.39 -0.02 1.71 16 46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 2.12 6.30 -2.38 -0.02 2.10 16 48 H 0.05 2.15 5.88 -2.39 -0.01 2.13 16 49 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 50 H 0.11 3.31 7.93 -2.39 -0.02 3.29 16 51 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 52 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 53 H 0.07 0.62 7.84 -2.39 -0.02 0.60 16 54 H 0.08 0.50 7.67 -2.39 -0.02 0.48 16 Total: -1.00 -72.75 425.20 -0.17 -72.93 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.63 Total: 33.61 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.60 Total: 12.53 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -8.08 Total: -114.69 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.09 Total: -49.36 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -72.75 -0.17 -72.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689823655.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.795 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds