Wall clock time and date at job start Tue Mar 31 2020 23:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.50917 * 2 1 4 4 C 1.53094 * 109.50927 * 239.90667 * 2 1 3 5 5 N 1.47014 * 109.25821 * 183.21987 * 4 2 1 6 6 C 1.46902 * 110.99835 * 182.39488 * 5 4 2 7 7 C 1.52999 * 109.47068 * 169.99975 * 6 5 4 8 8 N 1.46504 * 109.47133 * 179.97438 * 7 6 5 9 9 C 1.46494 * 120.00009 * 270.00407 * 8 7 6 10 10 C 1.34781 * 119.99832 * 89.99749 * 8 7 6 11 11 O 1.21588 * 119.99542 * 5.64053 * 10 8 7 12 12 N 1.34774 * 119.99912 * 185.36123 * 10 8 7 13 13 C 1.46499 * 119.99859 * 174.28407 * 12 10 8 14 14 C 1.53001 * 109.47017 * 184.56314 * 13 12 10 15 15 C 1.50701 * 115.54948 * 305.87520 * 14 13 12 16 16 H 1.07999 * 119.99680 * 143.94537 * 15 14 13 17 17 C 1.37873 * 120.00155 * 323.94499 * 15 14 13 18 18 N 1.31516 * 120.00083 * 356.42278 * 17 15 14 19 19 Si 1.86795 * 119.99942 * 176.42324 * 17 15 14 20 20 H 1.48502 * 109.47464 * 59.99772 * 19 17 15 21 21 H 1.48505 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47108 * 299.99796 * 19 17 15 23 23 C 1.53004 * 117.49714 * 160.20642 * 14 13 12 24 24 C 1.52999 * 117.49652 * 91.55045 * 14 13 12 25 25 C 1.47009 * 110.75347 * 58.61728 * 5 4 2 26 26 C 1.53092 * 109.26159 * 301.38401 * 25 5 4 27 27 H 1.09007 * 109.50490 * 296.91875 * 26 25 5 28 28 C 1.52993 * 109.50963 * 176.78351 * 26 25 5 29 29 O 1.43021 * 109.25773 * 56.84733 * 26 25 5 30 30 H 1.08996 * 109.47200 * 180.08834 * 1 2 3 31 31 H 1.09003 * 109.47391 * 300.09354 * 1 2 3 32 32 H 1.09009 * 109.46716 * 60.08620 * 1 2 3 33 33 H 1.08999 * 109.50378 * 63.28466 * 4 2 1 34 34 H 1.08998 * 109.54315 * 303.18184 * 4 2 1 35 35 H 1.09001 * 109.47094 * 50.00110 * 6 5 4 36 36 H 1.09007 * 109.47129 * 290.00085 * 6 5 4 37 37 H 1.09001 * 109.47053 * 60.00109 * 7 6 5 38 38 H 1.08995 * 109.47104 * 299.99754 * 7 6 5 39 39 H 1.08999 * 109.46851 * 264.52907 * 9 8 7 40 40 H 1.08997 * 109.47758 * 24.53273 * 9 8 7 41 41 H 1.09002 * 109.46923 * 144.53573 * 9 8 7 42 42 H 0.96999 * 120.00194 * 354.28959 * 12 10 8 43 43 H 1.09001 * 109.47335 * 304.56502 * 13 12 10 44 44 H 1.09001 * 109.46966 * 64.56554 * 13 12 10 45 45 H 0.97001 * 119.99765 * 185.02095 * 18 17 15 46 46 H 1.09004 * 117.49648 * 359.97438 * 23 14 13 47 47 H 1.08993 * 117.49857 * 145.01997 * 23 14 13 48 48 H 1.09005 * 117.49627 * 214.97873 * 24 14 13 49 49 H 1.08998 * 117.49755 * 359.97144 * 24 14 13 50 50 H 1.09005 * 109.50784 * 61.31987 * 25 5 4 51 51 H 1.09000 * 109.50876 * 181.44474 * 25 5 4 52 52 H 1.08999 * 109.47238 * 300.21267 * 28 26 25 53 53 H 1.08992 * 109.47391 * 60.21419 * 28 26 25 54 54 H 1.09007 * 109.47384 * 180.21755 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7236 -1.2485 5 7 3.5093 -0.7881 -1.2045 6 6 4.0447 -1.4262 -2.4146 7 6 5.5645 -1.2541 -2.4520 8 7 6.0985 -1.8909 -3.6585 9 6 6.5044 -3.2981 -3.6255 10 6 6.2162 -1.1821 -4.7988 11 8 5.9768 0.0099 -4.8011 12 7 6.6048 -1.7937 -5.9353 13 6 6.6124 -1.0536 -7.1996 14 6 6.9810 -2.0010 -8.3429 15 6 8.2667 -2.7665 -8.1638 16 1 8.3444 -3.7827 -8.5213 17 6 9.3438 -2.1696 -7.5437 18 7 9.2733 -0.9102 -7.1716 19 14 10.9031 -3.1498 -7.2321 20 1 11.4538 -3.6284 -8.5255 21 1 11.9048 -2.2853 -6.5577 22 1 10.5907 -4.3147 -6.3656 23 6 6.6050 -1.5741 -9.7633 24 6 5.8360 -2.7043 -9.0745 25 6 3.9639 -1.4885 0.0055 26 6 3.4334 -0.7573 1.2415 27 1 3.8533 0.2479 1.2779 28 6 3.8356 -1.5260 2.5017 29 8 2.0075 -0.6767 1.1661 30 1 -0.3633 -1.0276 0.0016 31 1 -0.3634 0.5153 0.8891 32 1 -0.3633 0.5125 -0.8909 33 1 1.7274 -0.1788 -2.1390 34 1 1.6331 -1.7338 -1.2773 35 1 3.6045 -0.9602 -3.2961 36 1 3.7994 -2.4883 -2.4042 37 1 6.0048 -1.7201 -1.5705 38 1 5.8098 -0.1921 -2.4625 39 1 7.5766 -3.3627 -3.4404 40 1 5.9666 -3.8129 -2.8294 41 1 6.2721 -3.7658 -4.5823 42 1 6.8792 -2.7238 -5.9162 43 1 5.6231 -0.6333 -7.3806 44 1 7.3448 -0.2482 -7.1446 45 1 10.0543 -0.4693 -6.8019 46 1 6.0946 -0.6184 -9.8830 47 1 7.2873 -1.8473 -10.5681 48 1 6.0128 -3.7207 -9.4266 49 1 4.8202 -2.4924 -8.7409 50 1 3.5865 -2.5111 -0.0024 51 1 5.0535 -1.5022 0.0304 52 1 3.4167 -2.5315 2.4632 53 1 4.9223 -1.5872 2.5586 54 1 3.4543 -1.0070 3.3812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797564878.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:37 Heat of formation + Delta-G solvation = -56.088624 kcal Electronic energy + Delta-G solvation = -30857.282729 eV Core-core repulsion = 26829.606947 eV Total energy + Delta-G solvation = -4027.675782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19673 -40.70142 -38.64262 -37.45903 -36.05053 -34.77485 -34.67145 -34.10493 -31.66135 -30.21970 -28.03290 -27.74706 -27.51165 -26.99470 -25.16110 -23.03988 -22.96530 -22.56656 -21.40452 -21.13102 -20.56543 -19.13930 -18.00361 -17.65020 -17.53332 -16.97887 -16.76405 -16.56985 -16.44014 -16.05417 -15.62442 -15.42768 -15.08553 -15.05962 -14.57897 -14.33726 -14.25089 -14.04552 -13.84061 -13.53894 -13.51296 -13.35268 -13.26086 -13.11702 -13.00780 -12.86514 -12.84234 -12.77150 -12.62315 -12.40855 -12.30016 -12.03940 -11.95624 -11.83036 -11.49068 -11.42444 -11.06607 -10.91305 -10.65680 -10.60218 -10.14037 -9.87777 -9.49379 -9.28922 -7.94671 -6.18444 1.44132 1.46933 1.53740 1.79235 2.31642 2.42977 2.65950 2.79823 3.03154 3.35465 3.67323 3.69037 3.83345 3.87266 4.01309 4.09573 4.15616 4.22147 4.27153 4.28369 4.34419 4.43498 4.48066 4.54134 4.60364 4.62385 4.64775 4.66137 4.76477 4.76774 4.79404 4.81821 4.87816 4.95626 4.96745 4.97742 5.01744 5.12212 5.12998 5.21704 5.29542 5.30034 5.53781 5.61570 5.63491 5.86597 5.88710 5.97111 5.99132 6.11682 6.25383 6.39655 6.83091 7.26755 7.46581 7.80153 8.94632 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.002452 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.242443 B =11418.642161 C =12436.863375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.061 0.939 4 C 0.027 3.973 5 N -0.547 5.547 6 C 0.057 3.943 7 C 0.144 3.856 8 N -0.635 5.635 9 C 0.079 3.921 10 C 0.693 3.307 11 O -0.645 6.645 12 N -0.700 5.700 13 C 0.193 3.807 14 C 0.011 3.989 15 C -0.505 4.505 16 H 0.061 0.939 17 C 0.035 3.965 18 N -0.892 5.892 19 Si 0.949 3.051 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.261 1.261 23 C -0.200 4.200 24 C -0.185 4.185 25 C 0.022 3.978 26 C 0.085 3.915 27 H 0.061 0.939 28 C -0.139 4.139 29 O -0.394 6.394 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.401 0.599 43 H 0.013 0.987 44 H 0.072 0.928 45 H 0.257 0.743 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.045 0.955 51 H 0.098 0.902 52 H 0.062 0.938 53 H 0.089 0.911 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 -5.042 17.641 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 H 0.079 0.921 4 C -0.101 4.101 5 N -0.272 5.272 6 C -0.072 4.072 7 C 0.020 3.980 8 N -0.373 5.373 9 C -0.064 4.064 10 C 0.394 3.606 11 O -0.528 6.528 12 N -0.353 5.353 13 C 0.068 3.932 14 C 0.010 3.990 15 C -0.543 4.543 16 H 0.079 0.921 17 C -0.167 4.167 18 N -0.529 5.529 19 Si 0.775 3.225 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.186 1.186 23 C -0.238 4.238 24 C -0.222 4.222 25 C -0.106 4.106 26 C 0.028 3.972 27 H 0.079 0.921 28 C -0.196 4.196 29 O -0.314 6.314 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.238 0.762 43 H 0.031 0.969 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.100 0.900 50 H 0.063 0.937 51 H 0.116 0.884 52 H 0.081 0.919 53 H 0.108 0.892 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.585 -3.688 17.915 22.202 hybrid contribution 1.010 -1.123 -0.704 1.666 sum -11.575 -4.811 17.211 21.292 Atomic orbital electron populations 1.21739 0.91193 1.03166 1.03561 1.22206 0.95984 0.95110 0.83554 0.92119 1.22823 0.87152 1.00259 0.99902 1.62079 1.09466 1.53371 1.02267 1.22291 0.95711 0.97143 0.92035 1.21171 0.92337 0.98781 0.85678 1.46960 1.68189 1.12680 1.09465 1.21874 1.00681 0.79911 1.03896 1.16178 0.78579 0.84563 0.81268 1.90803 1.61077 1.15263 1.85664 1.44875 1.68828 1.15424 1.06164 1.20539 0.96377 0.94970 0.81297 1.19247 0.93687 0.97019 0.89033 1.20656 0.96149 0.99188 1.38270 0.92125 1.25616 1.01112 0.95577 0.94389 1.70040 1.29479 1.11467 1.41908 0.85761 0.79517 0.78842 0.78395 1.20173 1.22114 1.18604 1.22947 1.04250 0.97732 0.98885 1.22934 0.96010 0.96512 1.06739 1.22961 1.01964 0.96046 0.89643 1.22277 0.80651 0.99241 0.95066 0.92086 1.21738 1.02541 1.00197 0.95122 1.87961 1.21791 1.78526 1.43171 0.91914 0.91102 0.89614 0.89835 0.94001 0.92863 0.93546 0.88103 0.92055 0.92672 0.87805 0.91565 0.76241 0.96887 0.91056 0.93381 0.90850 0.90388 0.89566 0.90014 0.93725 0.88353 0.91901 0.89192 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.57 71.98 0.69 -1.29 16 2 C 0.09 1.69 3.43 30.63 0.10 1.80 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.03 0.55 4.93 86.31 0.43 0.98 16 5 N -0.55 -12.43 4.73 -895.23 -4.23 -16.66 16 6 C 0.06 1.45 5.28 86.30 0.46 1.90 16 7 C 0.14 3.99 5.36 86.38 0.46 4.45 16 8 N -0.63 -20.54 2.87 -864.92 -2.49 -23.02 16 9 C 0.08 1.90 10.14 127.77 1.30 3.20 16 10 C 0.69 30.14 8.26 179.05 1.48 31.62 16 11 O -0.65 -33.46 15.91 -3.99 -0.06 -33.53 16 12 N -0.70 -30.90 5.20 -478.53 -2.49 -33.39 16 13 C 0.19 9.49 4.68 86.38 0.40 9.90 16 14 C 0.01 0.51 2.02 -52.93 -0.11 0.40 16 15 C -0.51 -25.20 8.28 25.60 0.21 -24.98 16 16 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 17 C 0.03 1.77 5.26 84.65 0.45 2.22 16 18 N -0.89 -48.93 10.53 21.45 0.23 -48.70 16 19 Si 0.95 40.51 29.54 68.60 2.03 42.54 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 23 C -0.20 -8.65 9.96 30.62 0.30 -8.34 16 24 C -0.18 -7.38 9.92 30.62 0.30 -7.07 16 25 C 0.02 0.39 4.72 86.31 0.41 0.80 16 26 C 0.09 1.51 3.43 30.62 0.10 1.62 16 27 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 28 C -0.14 -1.76 9.57 71.98 0.69 -1.07 16 29 O -0.39 -8.20 10.11 -148.98 -1.51 -9.70 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 33 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.65 8.04 -2.39 -0.02 1.63 16 36 H 0.05 1.05 8.12 -2.38 -0.02 1.03 16 37 H 0.10 2.10 6.45 -2.39 -0.02 2.08 16 38 H 0.06 2.11 7.35 -2.39 -0.02 2.10 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.71 8.03 -2.39 -0.02 1.69 16 41 H 0.07 1.65 6.53 -2.39 -0.02 1.63 16 42 H 0.40 16.55 5.75 -92.71 -0.53 16.02 16 43 H 0.01 0.64 8.09 -2.39 -0.02 0.62 16 44 H 0.07 4.11 5.94 -2.39 -0.01 4.09 16 45 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 46 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 47 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 48 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 49 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 50 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.10 1.56 6.38 -2.39 -0.02 1.55 16 52 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 53 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -65.48 422.03 -0.52 -66.00 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: 0.33 Total: 40.34 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 7.68 Total: 16.12 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -8.98 Total: -121.78 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.57 Total: -43.23 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -65.48 -0.52 -66.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797564878.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.909 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds