Wall clock time and date at job start Tue Mar 31 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58282 * 2 1 4 4 C 1.53190 * 109.58309 * 120.42629 * 2 1 3 5 5 C 1.53045 * 109.31049 * 174.42485 * 4 2 1 6 6 H 1.08998 * 109.46100 * 58.65415 * 5 4 2 7 7 N 1.46505 * 109.46005 * 178.62827 * 5 4 2 8 8 C 1.34772 * 119.99867 * 204.99877 * 7 5 4 9 9 O 1.21278 * 120.00110 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00001 * 180.02562 * 8 7 5 11 11 C 1.52999 * 109.47148 * 84.99881 * 10 8 7 12 12 C 1.52999 * 109.47128 * 204.99914 * 10 8 7 13 13 N 1.46902 * 109.47022 * 324.99730 * 10 8 7 14 14 C 1.47015 * 111.00280 * 303.63868 * 13 10 8 15 15 C 1.53092 * 109.26116 * 177.60938 * 14 13 10 16 16 O 1.43013 * 109.26154 * 56.84180 * 15 14 13 17 17 C 1.43021 * 113.73982 * 301.33417 * 16 15 14 18 18 C 1.47012 * 111.00193 * 179.97438 * 13 10 8 19 19 C 1.53040 * 109.53590 * 298.63330 * 5 4 2 20 20 C 1.53185 * 109.31295 * 61.36450 * 19 5 4 21 21 N 1.46915 * 109.58729 * 239.71491 * 2 1 3 22 22 C 1.36935 * 120.63246 * 6.58283 * 21 2 1 23 23 H 1.08000 * 120.00112 * 330.17884 * 22 21 2 24 24 C 1.38816 * 120.00067 * 150.17699 * 22 21 2 25 25 N 1.31613 * 120.00133 * 344.49798 * 24 22 21 26 26 Si 1.86807 * 119.99848 * 164.49238 * 24 22 21 27 27 H 1.48496 * 109.47002 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46825 * 120.00191 * 26 24 22 29 29 H 1.48498 * 109.47280 * 239.99995 * 26 24 22 30 30 H 1.09004 * 109.47540 * 180.28319 * 1 2 3 31 31 H 1.09003 * 109.47193 * 300.28904 * 1 2 3 32 32 H 1.09006 * 109.47082 * 60.28198 * 1 2 3 33 33 H 1.09005 * 109.50086 * 294.36876 * 4 2 1 34 34 H 1.08997 * 109.50138 * 54.47388 * 4 2 1 35 35 H 0.97001 * 120.00051 * 24.99453 * 7 5 4 36 36 H 1.08992 * 109.47349 * 60.00097 * 11 10 8 37 37 H 1.09001 * 109.47090 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.47147 * 299.99593 * 11 10 8 39 39 H 1.09004 * 109.47212 * 60.00219 * 12 10 8 40 40 H 1.09001 * 109.47057 * 179.97438 * 12 10 8 41 41 H 1.08992 * 109.47057 * 299.99712 * 12 10 8 42 42 H 1.09004 * 109.50179 * 297.53772 * 14 13 10 43 43 H 1.08997 * 109.50744 * 57.66927 * 14 13 10 44 44 H 1.09008 * 109.50531 * 296.91114 * 15 14 13 45 45 H 1.08996 * 109.51105 * 176.78086 * 15 14 13 46 46 H 1.08996 * 109.50607 * 298.73412 * 17 16 15 47 47 H 1.09001 * 109.50366 * 178.60341 * 17 16 15 48 48 H 1.08994 * 109.51251 * 302.33454 * 18 13 10 49 49 H 1.09007 * 109.50418 * 62.46098 * 18 13 10 50 50 H 1.08998 * 109.49740 * 301.41266 * 19 5 4 51 51 H 1.09001 * 109.49628 * 181.31916 * 19 5 4 52 52 H 1.08997 * 109.58834 * 185.57586 * 20 19 5 53 53 H 1.09004 * 109.58607 * 65.15197 * 20 19 5 54 54 H 0.97002 * 120.00257 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0434 -0.7309 1.2445 5 6 3.5674 -0.8494 1.1692 6 1 4.0060 0.1460 1.0996 7 7 4.0651 -1.5190 2.3735 8 6 5.3293 -1.3060 2.7892 9 8 6.0550 -0.5604 2.1661 10 6 5.8414 -1.9952 4.0277 11 6 6.3527 -3.3897 3.6608 12 6 6.9835 -1.1759 4.6319 13 7 4.7530 -2.1147 5.0071 14 6 4.1779 -0.7981 5.3190 15 6 3.0116 -0.9748 6.2948 16 8 3.4743 -1.6546 7.4649 17 6 4.0400 -2.9407 7.1978 18 6 5.2167 -2.7844 6.2309 19 6 3.9568 -1.6656 -0.0655 20 6 3.4650 -0.9453 -1.3248 21 7 2.0225 -0.6980 -1.1952 22 6 1.1536 -1.1108 -2.1698 23 1 0.1397 -1.3783 -1.9114 24 6 1.5760 -1.1853 -3.4901 25 7 2.6865 -0.5839 -3.8607 26 14 0.5683 -2.1392 -4.7407 27 1 -0.6270 -2.7175 -4.0758 28 1 0.1356 -1.2254 -5.8284 29 1 1.3949 -3.2325 -5.3122 30 1 -0.3634 -1.0277 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8926 33 1 1.7659 -0.1694 2.1367 34 1 1.6029 -1.7269 1.2892 35 1 3.4847 -2.1155 2.8716 36 1 7.1603 -3.3011 2.9341 37 1 6.7227 -3.8884 4.5566 38 1 5.5391 -3.9735 3.2304 39 1 6.6192 -0.1823 4.8934 40 1 7.3536 -1.6741 5.5280 41 1 7.7910 -1.0872 3.9053 42 1 4.9408 -0.1664 5.7742 43 1 3.8179 -0.3317 4.4020 44 1 2.2254 -1.5619 5.8199 45 1 2.6187 0.0029 6.5734 46 1 3.2838 -3.5848 6.7491 47 1 4.3909 -3.3846 8.1294 48 1 5.6147 -3.7674 5.9796 49 1 5.9963 -2.1847 6.7009 50 1 3.4983 -2.6528 -0.0084 51 1 5.0412 -1.7694 -0.1057 52 1 3.6518 -1.5690 -2.1989 53 1 3.9903 0.0038 -1.4315 54 1 2.9819 -0.6362 -4.7831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947799933.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:29 Heat of formation + Delta-G solvation = -72.370741 kcal Electronic energy + Delta-G solvation = -32305.913689 eV Core-core repulsion = 28277.531861 eV Total energy + Delta-G solvation = -4028.381827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90507 -40.25668 -39.28982 -37.45212 -36.12939 -34.20358 -33.02847 -32.94521 -32.12164 -31.18508 -28.43704 -28.01157 -27.55176 -26.77032 -25.30087 -24.14055 -23.47434 -22.19344 -21.51362 -21.09274 -20.09313 -18.72328 -18.17696 -17.43310 -17.11477 -16.84449 -16.80867 -16.16252 -15.95251 -15.81798 -15.67380 -15.57128 -15.38054 -15.18924 -15.05758 -14.80406 -14.59660 -14.33007 -13.71300 -13.53555 -13.33552 -13.17604 -13.06898 -12.95130 -12.83346 -12.73115 -12.67204 -12.60461 -12.47770 -12.34882 -12.30825 -12.05759 -12.02765 -11.83584 -11.72021 -11.49952 -11.41013 -11.30416 -10.75867 -10.57998 -10.55756 -9.96207 -9.48790 -8.63931 -7.83491 -5.30442 1.46805 1.48871 1.56210 1.58891 2.16841 2.52984 2.57194 2.99806 3.32704 3.49597 3.61183 3.83027 3.85796 3.94250 3.97373 4.03062 4.09057 4.15012 4.27637 4.30804 4.36096 4.39284 4.53310 4.61177 4.62037 4.63372 4.69357 4.72530 4.74850 4.76086 4.83054 4.83560 4.88841 4.92206 4.96041 5.03786 5.07246 5.11237 5.14684 5.16468 5.22340 5.38969 5.48734 5.55769 5.58370 5.70579 5.73602 5.73974 5.86396 6.23051 6.43748 6.63011 7.17481 7.28568 7.89179 8.42552 9.24084 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002923 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.866998 B = 9575.757620 C =10299.396513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.009 0.991 4 C -0.115 4.115 5 C 0.161 3.839 6 H 0.052 0.948 7 N -0.698 5.698 8 C 0.521 3.479 9 O -0.586 6.586 10 C 0.099 3.901 11 C -0.135 4.135 12 C -0.163 4.163 13 N -0.519 5.519 14 C 0.007 3.993 15 C 0.070 3.930 16 O -0.404 6.404 17 C 0.062 3.938 18 C 0.012 3.988 19 C -0.128 4.128 20 C 0.185 3.815 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.057 4.057 25 N -0.941 5.941 26 Si 0.963 3.037 27 H -0.261 1.261 28 H -0.297 1.297 29 H -0.295 1.295 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.416 0.584 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.042 0.958 52 H 0.053 0.947 53 H -0.015 1.015 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -6.960 25.536 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.053 3.947 3 H 0.027 0.973 4 C -0.154 4.154 5 C 0.056 3.944 6 H 0.070 0.930 7 N -0.348 5.348 8 C 0.308 3.692 9 O -0.466 6.466 10 C 0.006 3.994 11 C -0.193 4.193 12 C -0.222 4.222 13 N -0.245 5.245 14 C -0.121 4.121 15 C -0.007 4.007 16 O -0.323 6.323 17 C -0.015 4.015 18 C -0.115 4.115 19 C -0.168 4.168 20 C 0.058 3.942 21 N -0.327 5.327 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.251 4.251 25 N -0.588 5.588 26 Si 0.792 3.208 27 H -0.184 1.184 28 H -0.224 1.224 29 H -0.222 1.222 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.084 0.916 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.071 0.929 53 H 0.003 0.997 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.965 -6.640 24.925 25.964 hybrid contribution 0.544 0.279 -1.395 1.523 sum 3.509 -6.361 23.530 24.625 Atomic orbital electron populations 1.21707 0.93812 1.01707 1.01124 1.20639 0.94755 0.92787 0.86500 0.97309 1.22151 0.92385 1.02148 0.98727 1.20658 0.95015 0.95007 0.83707 0.92975 1.46089 1.13360 1.47957 1.27411 1.20874 0.81711 0.80468 0.86169 1.90711 1.57491 1.39248 1.59122 1.21231 0.91149 0.97622 0.89409 1.21862 1.01570 0.92487 1.03340 1.22227 0.98307 0.99773 1.01888 1.62486 1.30005 1.20138 1.11915 1.22943 0.98188 0.90596 1.00406 1.22671 0.94418 0.98461 0.85146 1.87973 1.79964 1.32381 1.31933 1.22839 0.94371 0.84639 0.99639 1.23019 0.97985 1.01026 0.89487 1.22284 0.98823 0.99595 0.96145 1.20412 0.83741 0.95261 0.94747 1.44422 1.02566 1.65681 1.19987 1.19585 0.95677 1.36035 0.86470 0.90186 1.25888 0.99150 1.01044 0.99061 1.70208 1.26159 1.45934 1.16497 0.85261 0.78596 0.77887 0.79068 1.18450 1.22396 1.22186 0.92595 0.90403 0.94218 0.89316 0.90696 0.74599 0.92336 0.88473 0.90991 0.93313 0.89250 0.92120 0.94155 0.90325 0.91362 0.87557 0.91647 0.86597 0.87107 0.93326 0.92014 0.93943 0.92870 0.99700 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.95 71.98 0.57 -3.75 16 2 C 0.16 6.31 3.50 44.98 0.16 6.47 16 3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 4 C -0.11 -3.52 4.84 30.67 0.15 -3.37 16 5 C 0.16 5.49 2.42 45.02 0.11 5.59 16 6 H 0.05 2.09 7.58 -2.39 -0.02 2.08 16 7 N -0.70 -18.61 3.97 -442.40 -1.76 -20.36 16 8 C 0.52 14.91 5.37 87.66 0.47 15.39 16 9 O -0.59 -22.53 15.76 -3.02 -0.05 -22.58 16 10 C 0.10 1.95 0.64 2.78 0.00 1.95 16 11 C -0.14 -2.19 8.23 71.98 0.59 -1.59 16 12 C -0.16 -3.21 7.31 71.98 0.53 -2.69 16 13 N -0.52 -8.11 3.82 -849.95 -3.25 -11.36 16 14 C 0.01 0.12 4.86 86.31 0.42 0.54 16 15 C 0.07 1.03 7.01 72.01 0.50 1.53 16 16 O -0.40 -6.65 10.83 -148.98 -1.61 -8.26 16 17 C 0.06 0.68 7.01 72.01 0.50 1.19 16 18 C 0.01 0.14 4.87 86.31 0.42 0.56 16 19 C -0.13 -5.19 5.65 30.67 0.17 -5.02 16 20 C 0.19 9.39 5.28 86.36 0.46 9.85 16 21 N -0.60 -29.86 2.99 -675.26 -2.02 -31.87 16 22 C -0.25 -13.21 8.57 84.03 0.72 -12.49 16 23 H 0.08 4.05 6.24 -2.91 -0.02 4.03 16 24 C -0.06 -3.18 4.94 84.86 0.42 -2.76 16 25 N -0.94 -57.09 11.23 21.65 0.24 -56.84 16 26 Si 0.96 44.95 29.58 68.60 2.03 46.98 16 27 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 30 H 0.05 1.89 7.44 -2.38 -0.02 1.87 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.52 7.63 -2.38 -0.02 1.51 16 33 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.42 9.01 7.92 -92.71 -0.73 8.28 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.00 6.35 -2.39 -0.02 0.99 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.07 6.54 -2.39 -0.02 1.06 16 40 H 0.09 1.28 6.46 -2.39 -0.02 1.26 16 41 H 0.06 1.39 7.87 -2.39 -0.02 1.38 16 42 H 0.04 0.77 6.52 -2.38 -0.02 0.76 16 43 H 0.08 1.59 6.22 -2.39 -0.01 1.58 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.11 0.85 6.18 -2.39 -0.01 0.84 16 49 H 0.05 0.59 6.44 -2.38 -0.02 0.57 16 50 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.05 3.04 6.15 -2.39 -0.01 3.03 16 53 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 16 54 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -70.91 397.62 -0.06 -70.98 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.15 Total: 21.92 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.20 Total: 11.40 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.78 Total: -120.43 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.66 Total: -30.83 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.91 -0.06 -70.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947799933.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.393 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds