Wall clock time and date at job start Tue Mar 31 2020 23:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.50770 * 2 1 4 4 C 1.53099 * 109.50667 * 239.90952 * 2 1 3 5 5 N 1.47011 * 109.25606 * 183.16997 * 4 2 1 6 6 C 1.46907 * 111.00007 * 182.39520 * 5 4 2 7 7 C 1.47015 * 110.75401 * 58.62043 * 5 4 2 8 8 C 1.53096 * 109.25677 * 301.37957 * 7 5 4 9 9 H 1.08997 * 109.50890 * 296.91507 * 8 7 5 10 10 C 1.50700 * 109.50832 * 176.82637 * 8 7 5 11 11 O 1.21282 * 119.99667 * 255.07859 * 10 8 7 12 12 N 1.34776 * 120.00020 * 75.07375 * 10 8 7 13 13 C 1.46959 * 120.35204 * 184.93482 * 12 10 8 14 14 C 1.52340 * 109.08880 * 68.38095 * 13 12 10 15 15 C 1.53793 * 109.16062 * 72.70124 * 14 13 12 16 16 C 1.52444 * 109.42346 * 282.12605 * 15 14 13 17 17 C 1.53969 * 110.73459 * 113.73221 * 16 15 14 18 18 C 1.52881 * 109.71202 * 315.65144 * 17 16 15 19 19 H 1.09001 * 109.48392 * 47.09355 * 18 17 16 20 20 N 1.46504 * 109.47682 * 167.11526 * 18 17 16 21 21 C 1.36941 * 119.99493 * 205.00029 * 20 18 17 22 22 H 1.07998 * 120.00230 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99562 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99413 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.47257 * 90.00021 * 25 23 21 27 27 H 1.48496 * 109.47235 * 209.99902 * 25 23 21 28 28 H 1.48499 * 109.47282 * 330.00376 * 25 23 21 29 29 C 1.45339 * 120.35136 * 4.66081 * 12 10 8 30 30 O 1.43015 * 109.54405 * 120.10636 * 2 1 3 31 31 H 1.09012 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47094 * 299.99822 * 1 2 3 33 33 H 1.08998 * 109.47205 * 60.00416 * 1 2 3 34 34 H 1.08996 * 109.50945 * 303.10498 * 4 2 1 35 35 H 1.08997 * 109.50606 * 63.19860 * 4 2 1 36 36 H 1.08997 * 109.47165 * 63.95377 * 6 5 4 37 37 H 1.09003 * 109.47363 * 183.95566 * 6 5 4 38 38 H 1.08998 * 109.47073 * 303.95393 * 6 5 4 39 39 H 1.08997 * 109.50802 * 61.31903 * 7 5 4 40 40 H 1.09007 * 109.51098 * 181.40403 * 7 5 4 41 41 H 1.09002 * 109.53113 * 188.26331 * 13 12 10 42 42 H 1.08998 * 109.53777 * 308.49415 * 13 12 10 43 43 H 1.09003 * 109.51950 * 192.60343 * 14 13 12 44 44 H 1.09000 * 109.52329 * 312.79515 * 14 13 12 45 45 H 1.08997 * 109.48544 * 42.11517 * 15 14 13 46 46 H 1.09001 * 109.48291 * 162.14357 * 15 14 13 47 47 H 1.09000 * 109.23259 * 234.05346 * 16 15 14 48 48 H 1.09001 * 109.22425 * 353.45239 * 16 15 14 49 49 H 1.08994 * 109.43073 * 75.72354 * 17 16 15 50 50 H 1.09002 * 109.43349 * 195.62426 * 17 16 15 51 51 H 0.97001 * 120.00425 * 24.99264 * 20 18 17 52 52 H 0.97001 * 119.99071 * 180.02562 * 24 23 21 53 53 H 1.08995 * 109.67554 * 343.07494 * 29 12 10 54 54 H 1.08999 * 109.67523 * 103.61358 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 3.5093 -0.7871 -1.2052 6 6 4.0446 -1.4250 -2.4154 7 6 3.9649 -1.4869 0.0048 8 6 3.4344 -0.7557 1.2409 9 1 3.8537 0.2497 1.2769 10 6 3.8325 -1.5117 2.4822 11 8 3.0082 -2.1678 3.0831 12 7 5.1045 -1.4588 2.9246 13 6 5.5272 -2.2772 4.0697 14 6 5.5105 -3.7459 3.6655 15 6 6.6914 -4.0227 2.7199 16 6 6.3536 -3.5114 1.3240 17 6 7.2685 -2.3346 0.9384 18 6 7.3877 -1.3667 2.1158 19 1 7.5915 -1.9274 3.0281 20 7 8.4824 -0.4258 1.8658 21 6 9.1192 0.1785 2.9168 22 1 8.8142 -0.0383 3.9299 23 6 10.1569 1.0697 2.6800 24 7 10.7686 1.6508 3.6901 25 14 10.6850 1.4440 0.9277 26 1 9.9067 2.5989 0.4121 27 1 12.1327 1.7739 0.9068 28 1 10.4354 0.2569 0.0712 29 6 6.0743 -0.5963 2.2704 30 8 2.0084 -0.6760 1.1659 31 1 -0.3634 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6338 -1.7341 -1.2761 35 1 1.7260 -0.1796 -2.1391 36 1 3.8054 -0.8130 -3.2849 37 1 5.1266 -1.5227 -2.3263 38 1 3.5992 -2.4129 -2.5327 39 1 3.5882 -2.5097 -0.0027 40 1 5.0546 -1.5005 0.0290 41 1 6.5361 -1.9927 4.3683 42 1 4.8416 -2.1206 4.9025 43 1 5.6022 -4.3695 4.5549 44 1 4.5744 -3.9728 3.1553 45 1 7.5804 -3.5113 3.0890 46 1 6.8801 -5.0954 2.6782 47 1 6.4855 -4.3192 0.6042 48 1 5.3156 -3.1795 1.3048 49 1 8.2570 -2.7136 0.6791 50 1 6.8445 -1.8113 0.0813 51 1 8.7563 -0.2309 0.9559 52 1 11.4935 2.2738 3.5245 53 1 5.7025 -0.3048 1.2882 54 1 6.2434 0.2927 2.8780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088336250.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:34 Heat of formation + Delta-G solvation = -64.617765 kcal Electronic energy + Delta-G solvation = -33203.717631 eV Core-core repulsion = 29175.671998 eV Total energy + Delta-G solvation = -4028.045633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.11741 -40.43439 -38.93778 -36.81192 -36.34402 -35.36964 -34.34150 -33.76849 -32.20487 -30.58292 -28.76309 -28.01416 -27.52694 -26.30979 -25.10324 -23.59586 -23.58499 -22.74397 -21.62729 -21.12454 -19.93389 -19.52584 -18.36946 -18.00487 -17.27747 -17.16998 -16.79373 -16.51472 -16.37769 -16.15022 -15.66874 -15.38436 -15.30480 -15.02721 -14.95792 -14.75511 -14.36347 -14.08306 -13.95385 -13.87411 -13.66472 -13.37031 -13.33054 -13.16732 -13.06702 -12.90027 -12.84863 -12.74951 -12.48401 -12.25662 -12.17291 -12.09275 -11.94198 -11.78879 -11.76846 -11.56771 -11.46930 -11.17978 -11.03891 -10.72299 -10.65003 -9.66406 -9.52467 -9.23619 -7.97627 -5.31955 1.38529 1.43049 1.45740 1.52868 1.65817 2.53157 2.66433 2.76367 3.33939 3.37174 3.58701 3.62906 3.70955 3.77317 3.86032 3.96322 4.01404 4.04586 4.13980 4.18395 4.21418 4.27074 4.31699 4.43226 4.46754 4.50635 4.55419 4.56731 4.65573 4.66046 4.68805 4.72127 4.80142 4.83419 4.92231 4.96438 5.00043 5.01726 5.10348 5.16764 5.22860 5.27569 5.33705 5.38456 5.43997 5.64001 5.75268 5.82865 5.87918 6.02459 6.24172 6.36035 7.03707 7.12578 7.86672 8.05675 9.23486 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.004147 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.195484 B = 6750.281772 C = 7709.863492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.070 0.930 4 C 0.024 3.976 5 N -0.548 5.548 6 C 0.023 3.977 7 C 0.034 3.966 8 C 0.079 3.921 9 H 0.090 0.910 10 C 0.523 3.477 11 O -0.560 6.560 12 N -0.587 5.587 13 C 0.111 3.889 14 C -0.127 4.127 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.121 4.121 18 C 0.158 3.842 19 H 0.072 0.928 20 N -0.743 5.743 21 C -0.226 4.226 22 H 0.059 0.941 23 C -0.060 4.060 24 N -0.984 5.984 25 Si 0.949 3.051 26 H -0.280 1.280 27 H -0.303 1.303 28 H -0.246 1.246 29 C 0.086 3.914 30 O -0.381 6.381 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.367 0.633 52 H 0.256 0.744 53 H 0.091 0.909 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.045 -9.008 -13.572 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.019 3.981 3 H 0.088 0.912 4 C -0.104 4.104 5 N -0.272 5.272 6 C -0.124 4.124 7 C -0.094 4.094 8 C 0.017 3.983 9 H 0.107 0.893 10 C 0.310 3.690 11 O -0.438 6.438 12 N -0.320 5.320 13 C -0.010 4.010 14 C -0.165 4.165 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.159 4.159 18 C 0.049 3.951 19 H 0.090 0.910 20 N -0.386 5.386 21 C -0.357 4.357 22 H 0.077 0.923 23 C -0.252 4.252 24 N -0.634 5.634 25 Si 0.777 3.223 26 H -0.206 1.206 27 H -0.230 1.230 28 H -0.171 1.171 29 C -0.039 4.039 30 O -0.300 6.300 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.058 0.942 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.201 0.799 52 H 0.065 0.935 53 H 0.109 0.891 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.358 -8.906 -12.893 23.385 hybrid contribution 0.643 0.110 -0.514 0.831 sum -16.715 -8.797 -13.408 23.163 Atomic orbital electron populations 1.21744 0.90757 1.03129 1.03865 1.22534 0.96435 0.95605 0.83492 0.91206 1.22918 0.87169 1.00429 0.99870 1.62240 1.09749 1.52801 1.02453 1.22478 1.00862 0.97574 0.91503 1.22765 1.02067 0.95364 0.89250 1.21904 0.83639 0.99798 0.92927 0.89267 1.20245 0.81799 0.81368 0.85591 1.90653 1.50796 1.43538 1.58805 1.47731 1.08676 1.43316 1.32255 1.21636 1.00739 0.91047 0.87597 1.21955 0.98772 0.95036 1.00728 1.21815 0.97887 1.01571 0.94953 1.21716 0.98980 0.97241 0.97185 1.22057 1.00585 0.96096 0.97207 1.21001 0.85438 0.89533 0.99102 0.91037 1.42711 1.38877 1.52465 1.04570 1.18976 1.10793 1.17669 0.88216 0.92267 1.25441 0.99135 0.99779 1.00809 1.69886 1.27363 1.34336 1.31817 0.85496 0.76665 0.78992 0.81149 1.20647 1.23001 1.17060 1.22481 0.90183 0.93411 0.97868 1.88067 1.18523 1.78965 1.44493 0.92249 0.91979 0.87923 0.94153 0.86864 0.89267 0.90643 0.94943 0.94236 0.87662 0.89312 0.91769 0.89609 0.92312 0.91496 0.90620 0.90781 0.92687 0.91318 0.91085 0.79926 0.93529 0.89103 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.57 71.98 0.69 -1.44 16 2 C 0.08 1.57 3.42 30.63 0.10 1.67 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.02 0.42 4.94 86.32 0.43 0.84 16 5 N -0.55 -10.72 4.99 -921.43 -4.59 -15.31 16 6 C 0.02 0.34 9.63 127.69 1.23 1.57 16 7 C 0.03 0.78 3.51 86.31 0.30 1.09 16 8 C 0.08 2.19 2.35 29.88 0.07 2.26 16 9 H 0.09 2.45 7.08 -2.39 -0.02 2.44 16 10 C 0.52 16.69 5.49 87.66 0.48 17.17 16 11 O -0.56 -21.42 15.52 15.51 0.24 -21.18 16 12 N -0.59 -17.47 1.69 -824.72 -1.40 -18.87 16 13 C 0.11 3.19 5.18 86.07 0.45 3.64 16 14 C -0.13 -3.14 5.56 30.64 0.17 -2.97 16 15 C -0.13 -2.88 5.49 30.68 0.17 -2.71 16 16 C -0.11 -2.54 5.22 30.74 0.16 -2.38 16 17 C -0.12 -3.08 4.80 30.88 0.15 -2.94 16 18 C 0.16 5.12 2.29 44.97 0.10 5.23 16 19 H 0.07 2.47 3.29 -2.39 -0.01 2.46 16 20 N -0.74 -30.70 4.93 -323.03 -1.59 -32.29 16 21 C -0.23 -11.83 10.36 84.03 0.87 -10.96 16 22 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 23 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 24 N -0.98 -60.89 13.97 21.65 0.30 -60.59 16 25 Si 0.95 42.92 27.73 68.60 1.90 44.82 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.25 -9.78 6.52 99.48 0.65 -9.13 16 29 C 0.09 2.67 5.05 86.61 0.44 3.10 16 30 O -0.38 -11.07 9.69 -130.43 -1.26 -12.34 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 38 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.04 0.98 7.98 -2.39 -0.02 0.96 16 40 H 0.11 2.34 3.36 -2.38 -0.01 2.33 16 41 H 0.09 2.64 6.07 -2.39 -0.01 2.63 16 42 H 0.06 1.90 8.04 -2.39 -0.02 1.88 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 1.65 6.36 -2.39 -0.02 1.64 16 45 H 0.07 1.75 5.47 -2.39 -0.01 1.74 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.05 1.33 3.54 -2.39 -0.01 1.32 16 49 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 50 H 0.07 1.61 6.09 -2.39 -0.01 1.60 16 51 H 0.37 14.54 5.66 -92.71 -0.52 14.01 16 52 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 53 H 0.09 2.53 4.25 -2.39 -0.01 2.52 16 54 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 Total: -1.00 -69.36 385.04 0.20 -69.16 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.32 Total: 36.29 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.28 Total: 10.29 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -7.28 Total: -127.06 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.02 Total: -33.52 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.90 Total: 44.82 kcal Total: -69.36 0.20 -69.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088336250.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.546 kcal (2) G-P(sol) polarization free energy of solvation -69.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds