Wall clock time and date at job start Tue Mar 31 2020 23:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.28625 * 2 1 4 4 C 1.54379 * 110.32619 * 237.76015 * 2 1 3 5 5 N 1.48552 * 104.59504 * 217.25478 * 4 2 1 6 6 C 1.46906 * 110.99759 * 159.04110 * 5 4 2 7 7 C 1.48561 * 104.22573 * 39.48351 * 5 4 2 8 8 C 1.54257 * 110.32151 * 122.12627 * 2 1 3 9 9 H 1.08995 * 110.32210 * 237.89623 * 8 2 1 10 10 C 1.50705 * 110.32308 * 359.97438 * 8 2 1 11 11 O 1.21280 * 120.00244 * 96.38766 * 10 8 2 12 12 N 1.34776 * 119.99963 * 276.38643 * 10 8 2 13 13 C 1.46927 * 120.63126 * 174.01332 * 12 10 8 14 14 C 1.53194 * 108.77840 * 126.41008 * 13 12 10 15 15 C 1.53045 * 109.33753 * 54.61752 * 14 13 12 16 16 N 1.46502 * 109.45838 * 178.63184 * 15 14 13 17 17 C 1.36934 * 119.99805 * 59.99869 * 16 15 14 18 18 H 1.08001 * 120.00260 * 323.13304 * 17 16 15 19 19 C 1.38813 * 120.00069 * 143.13561 * 17 16 15 20 20 N 1.31617 * 120.00311 * 160.14895 * 19 17 16 21 21 Si 1.86802 * 119.99735 * 340.14985 * 19 17 16 22 22 H 1.48503 * 109.47067 * 92.91197 * 21 19 17 23 23 H 1.48496 * 109.47326 * 212.91501 * 21 19 17 24 24 H 1.48501 * 109.47172 * 332.91468 * 21 19 17 25 25 C 1.46494 * 119.99729 * 240.00142 * 16 15 14 26 26 C 1.53000 * 109.47428 * 84.09806 * 25 16 15 27 27 O 1.42899 * 109.47454 * 63.56117 * 26 25 16 28 28 C 1.53039 * 109.53801 * 298.68399 * 15 14 13 29 29 C 1.46935 * 120.62991 * 354.02693 * 12 10 8 30 30 H 1.08997 * 109.47130 * 301.31238 * 1 2 3 31 31 H 1.09003 * 109.46882 * 61.30833 * 1 2 3 32 32 H 1.08997 * 109.47503 * 181.29921 * 1 2 3 33 33 H 1.08999 * 110.40923 * 336.03647 * 4 2 1 34 34 H 1.09006 * 110.41072 * 98.35321 * 4 2 1 35 35 H 1.09000 * 109.47563 * 60.12897 * 6 5 4 36 36 H 1.09007 * 109.47126 * 180.12192 * 6 5 4 37 37 H 1.08991 * 109.47142 * 300.12198 * 6 5 4 38 38 H 1.08989 * 110.41203 * 201.73676 * 7 5 4 39 39 H 1.09001 * 110.40882 * 79.29162 * 7 5 4 40 40 H 1.09002 * 109.58454 * 6.62134 * 13 12 10 41 41 H 1.08999 * 109.58198 * 246.19810 * 13 12 10 42 42 H 1.08994 * 109.49689 * 174.58718 * 14 13 12 43 43 H 1.08998 * 109.49617 * 294.65172 * 14 13 12 44 44 H 1.08992 * 109.45863 * 58.67371 * 15 14 13 45 45 H 0.97004 * 119.99444 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.46853 * 204.09058 * 25 16 15 47 47 H 1.08997 * 109.47438 * 324.08824 * 25 16 15 48 48 H 1.09001 * 109.47187 * 183.57092 * 26 25 16 49 49 H 1.09005 * 109.46671 * 303.56276 * 26 25 16 50 50 H 0.96698 * 113.99875 * 179.97438 * 27 26 25 51 51 H 1.09003 * 109.47329 * 301.36470 * 28 15 14 52 52 H 1.08999 * 109.52222 * 181.29993 * 28 15 14 53 53 H 1.08997 * 109.58590 * 353.37963 * 29 12 10 54 54 H 1.09004 * 109.57911 * 113.80470 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7723 -1.2245 5 7 3.2693 -1.4836 -0.7209 6 6 3.6068 -2.6233 -1.5842 7 6 2.8806 -1.9416 0.6378 8 6 2.0658 -0.7693 1.2251 9 1 2.7066 -0.1245 1.8264 10 6 0.9223 -1.2908 2.0567 11 8 0.5378 -2.4318 1.9115 12 7 0.3269 -0.4891 2.9619 13 6 -0.8701 -0.9375 3.6863 14 6 -0.6227 -0.7841 5.1904 15 6 -0.2094 0.6584 5.4914 16 7 -0.0037 0.8164 6.9333 17 6 0.9393 0.0606 7.5772 18 1 1.1026 -0.9654 7.2822 19 6 1.6854 0.6132 8.6091 20 7 2.2920 -0.1703 9.4754 21 14 1.8286 2.4689 8.7682 22 1 0.7699 2.9706 9.6808 23 1 3.1629 2.8171 9.3192 24 1 1.6666 3.0943 7.4311 25 6 -0.8070 1.7828 7.6861 26 6 -2.1416 1.1437 8.0751 27 8 -1.9040 0.0411 8.9526 28 6 1.0903 0.9834 4.7517 29 6 0.8623 0.8501 3.2427 30 1 -0.3633 0.5341 0.8780 31 1 -0.3633 0.4934 -0.9015 32 1 -0.3634 -1.0273 0.0233 33 1 1.3229 -1.4864 -1.5789 34 1 2.3375 -0.0800 -2.0216 35 1 3.8110 -2.2666 -2.5937 36 1 4.4898 -3.1276 -1.1916 37 1 2.7701 -3.3214 -1.6078 38 1 3.7669 -2.1297 1.2436 39 1 2.2647 -2.8387 0.5748 40 1 -1.0676 -1.9839 3.4534 41 1 -1.7247 -0.3280 3.3926 42 1 -1.5360 -1.0222 5.7354 43 1 0.1727 -1.4624 5.4992 44 1 -0.9947 1.3377 5.1603 45 1 2.8130 0.2159 10.1967 46 1 -0.2695 2.0783 8.5872 47 1 -0.9913 2.6617 7.0684 48 1 -2.7646 1.8821 8.5798 49 1 -2.6506 0.7910 7.1781 50 1 -2.7079 -0.4124 9.2408 51 1 1.8700 0.2889 5.0646 52 1 1.3967 2.0032 4.9845 53 1 1.8079 0.9831 2.7171 54 1 0.1489 1.6053 2.9128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098479280.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:14 Heat of formation + Delta-G solvation = -67.597423 kcal Electronic energy + Delta-G solvation = -32208.632863 eV Core-core repulsion = 28180.458022 eV Total energy + Delta-G solvation = -4028.174841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87065 -39.83933 -38.79603 -37.68988 -36.32426 -34.64516 -33.76415 -32.48694 -32.08819 -30.88380 -29.60325 -28.02282 -26.80817 -25.86759 -24.66255 -24.10613 -23.08871 -22.28005 -21.92974 -21.04611 -19.48881 -18.49657 -18.35420 -17.95562 -17.31420 -17.14974 -17.00134 -16.34268 -16.02491 -15.72831 -15.53857 -15.41286 -15.13772 -14.76990 -14.71384 -14.56141 -14.45374 -14.16092 -14.10959 -13.60846 -13.53946 -13.42349 -13.38015 -13.15063 -13.13020 -12.81464 -12.52881 -12.47668 -12.40350 -12.22416 -12.11470 -12.04800 -11.84810 -11.77424 -11.68750 -11.54671 -11.30857 -11.20111 -10.72104 -10.64404 -10.48059 -9.59964 -9.55699 -8.65583 -8.04229 -5.41884 1.33967 1.43230 1.54184 1.59838 2.01693 2.51689 3.00145 3.12340 3.35134 3.45935 3.55993 3.65785 3.74752 3.86889 4.06387 4.12596 4.22026 4.24621 4.32189 4.36033 4.42330 4.45325 4.47692 4.50413 4.53703 4.55059 4.64839 4.67535 4.70371 4.74563 4.77738 4.79322 4.81528 4.85036 4.90129 4.96391 4.99680 5.05369 5.08485 5.10322 5.18492 5.20609 5.33909 5.46954 5.59544 5.65324 5.73028 5.96865 6.07335 6.30453 6.45358 7.09187 7.17342 7.20018 7.78471 8.15065 9.17062 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.003092 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.282554 B = 9053.249888 C = 9576.755607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.072 4.072 3 H 0.114 0.886 4 C 0.035 3.965 5 N -0.520 5.520 6 C 0.012 3.988 7 C 0.042 3.958 8 C -0.114 4.114 9 H 0.115 0.885 10 C 0.528 3.472 11 O -0.590 6.590 12 N -0.603 5.603 13 C 0.123 3.877 14 C -0.126 4.126 15 C 0.177 3.823 16 N -0.603 5.603 17 C -0.210 4.210 18 H 0.024 0.976 19 C -0.032 4.032 20 N -0.965 5.965 21 Si 0.948 3.052 22 H -0.284 1.284 23 H -0.321 1.321 24 H -0.242 1.242 25 C 0.115 3.885 26 C 0.061 3.939 27 O -0.580 6.580 28 C -0.138 4.138 29 C 0.114 3.886 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.021 0.979 44 H 0.090 0.910 45 H 0.254 0.746 46 H 0.035 0.965 47 H 0.090 0.910 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.376 0.624 51 H 0.034 0.966 52 H 0.074 0.926 53 H 0.101 0.899 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 6.788 -22.541 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 H 0.132 0.868 4 C -0.092 4.092 5 N -0.243 5.243 6 C -0.136 4.136 7 C -0.087 4.087 8 C -0.135 4.135 9 H 0.133 0.867 10 C 0.317 3.683 11 O -0.472 6.472 12 N -0.335 5.335 13 C 0.000 4.000 14 C -0.166 4.166 15 C 0.071 3.929 16 N -0.324 5.324 17 C -0.341 4.341 18 H 0.042 0.958 19 C -0.225 4.225 20 N -0.611 5.611 21 Si 0.779 3.221 22 H -0.212 1.212 23 H -0.251 1.251 24 H -0.165 1.165 25 C -0.010 4.010 26 C -0.018 4.018 27 O -0.385 6.385 28 C -0.177 4.177 29 C -0.008 4.008 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.040 0.960 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.223 0.777 51 H 0.053 0.947 52 H 0.093 0.907 53 H 0.119 0.881 54 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.837 6.735 -22.599 24.293 hybrid contribution -0.718 -0.905 1.381 1.800 sum -6.554 5.830 -21.218 22.960 Atomic orbital electron populations 1.21997 0.94144 1.01171 1.03604 1.21855 0.95943 1.00325 0.91026 0.86767 1.23304 0.90679 0.97527 0.97718 1.65422 1.33469 1.23557 1.01858 1.22559 1.00557 0.92176 0.98335 1.23008 0.98308 0.96007 0.91343 1.22230 0.95029 0.98784 0.97475 0.86693 1.20695 0.83540 0.84489 0.79533 1.90634 1.66624 1.19976 1.69921 1.48202 1.28908 1.17227 1.39156 1.21539 0.87338 1.00817 0.90265 1.22146 1.00337 0.99185 0.94905 1.20548 0.95869 0.94330 0.82134 1.44168 1.39755 1.45197 1.03307 1.18229 1.10772 0.91974 1.13114 0.95826 1.26026 0.97663 1.01460 0.97399 1.70029 1.38274 1.36546 1.16240 0.85825 0.74417 0.82945 0.78949 1.21243 1.25106 1.16482 1.21613 0.91339 0.92345 0.95700 1.22905 0.97799 0.88497 0.92627 1.86848 1.36123 1.47929 1.67632 1.22259 0.99124 1.01685 0.94674 1.22016 1.01123 0.82709 0.94947 0.91274 0.90099 0.94894 0.94297 0.87745 0.89449 0.90963 0.95897 0.90152 0.93874 0.91479 0.88565 0.91869 0.95998 0.89171 0.93697 0.94669 0.89215 0.92700 0.92911 0.77741 0.94704 0.90698 0.88063 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 7.93 71.98 0.57 -1.90 16 2 C -0.07 -1.16 3.65 -9.90 -0.04 -1.20 16 3 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.04 0.59 6.04 86.45 0.52 1.11 16 5 N -0.52 -10.39 5.66 -907.65 -5.14 -15.53 16 6 C 0.01 0.21 9.53 127.69 1.22 1.43 16 7 C 0.04 1.02 5.96 86.45 0.52 1.53 16 8 C -0.11 -2.50 2.61 -10.64 -0.03 -2.53 16 9 H 0.12 2.29 6.24 -2.39 -0.01 2.28 16 10 C 0.53 15.02 4.72 87.66 0.41 15.44 16 11 O -0.59 -21.60 14.64 -3.03 -0.04 -21.65 16 12 N -0.60 -15.62 2.22 -818.88 -1.81 -17.44 16 13 C 0.12 3.39 6.44 86.36 0.56 3.94 16 14 C -0.13 -4.33 5.30 30.67 0.16 -4.17 16 15 C 0.18 5.88 2.59 45.02 0.12 6.00 16 16 N -0.60 -25.96 1.99 -677.90 -1.35 -27.31 16 17 C -0.21 -11.77 8.49 84.03 0.71 -11.06 16 18 H 0.02 1.56 7.03 -2.91 -0.02 1.54 16 19 C -0.03 -1.87 5.32 84.86 0.45 -1.42 16 20 N -0.96 -62.99 13.97 21.65 0.30 -62.69 16 21 Si 0.95 46.23 24.92 68.60 1.71 47.94 16 22 H -0.28 -13.48 6.59 99.48 0.66 -12.83 16 23 H -0.32 -16.31 7.11 99.48 0.71 -15.60 16 24 H -0.24 -10.40 7.11 99.48 0.71 -9.69 16 25 C 0.11 4.41 4.60 86.38 0.40 4.81 16 26 C 0.06 2.02 7.39 71.98 0.53 2.55 16 27 O -0.58 -23.48 13.35 -148.98 -1.99 -25.47 16 28 C -0.14 -4.25 5.31 30.67 0.16 -4.09 16 29 C 0.11 2.40 5.66 86.36 0.49 2.89 16 30 H 0.07 1.09 6.35 -2.39 -0.02 1.08 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.03 0.73 7.15 -2.39 -0.02 0.71 16 33 H 0.04 0.71 7.69 -2.39 -0.02 0.69 16 34 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.02 0.42 7.97 -2.39 -0.02 0.40 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.27 6.56 -2.39 -0.02 1.25 16 40 H 0.07 2.11 7.00 -2.39 -0.02 2.10 16 41 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.02 0.95 7.05 -2.39 -0.02 0.94 16 44 H 0.09 2.35 7.87 -2.39 -0.02 2.33 16 45 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 46 H 0.04 1.60 3.22 -2.39 -0.01 1.59 16 47 H 0.09 2.71 8.05 -2.39 -0.02 2.69 16 48 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 50 H 0.38 10.88 9.12 -74.06 -0.68 10.21 16 51 H 0.03 1.37 7.71 -2.39 -0.02 1.35 16 52 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 53 H 0.10 1.77 5.45 -2.39 -0.01 1.76 16 54 H 0.10 1.51 8.07 -2.38 -0.02 1.49 16 Total: -1.00 -80.91 399.47 -1.40 -82.32 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.16 Total: 26.52 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.76 Total: 13.32 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -7.99 Total: -122.97 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -2.03 Total: -47.12 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.71 Total: 47.94 kcal Total: -80.91 -1.40 -82.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098479280.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.718 kcal (2) G-P(sol) polarization free energy of solvation -80.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds