Wall clock time and date at job start Tue Mar 31 2020 23:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.91656 * 2 1 4 4 C 1.54908 * 111.00021 * 236.10175 * 2 1 3 5 5 N 1.47423 * 104.83357 * 204.91611 * 4 2 1 6 6 C 1.34777 * 125.65491 * 204.09186 * 5 4 2 7 7 O 1.21281 * 120.00351 * 180.02562 * 6 5 4 8 8 C 1.50706 * 119.99592 * 0.04362 * 6 5 4 9 9 C 1.52997 * 109.47001 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46944 * 60.00219 * 9 8 6 11 11 C 1.53004 * 109.47101 * 179.97438 * 9 8 6 12 12 C 1.53004 * 109.47503 * 300.00061 * 9 8 6 13 13 C 1.47023 * 108.70235 * 24.12824 * 5 4 2 14 14 C 1.54330 * 107.27020 * 358.94091 * 13 5 4 15 15 H 1.09002 * 110.71820 * 96.34389 * 14 13 5 16 16 C 1.52997 * 110.72125 * 219.44185 * 14 13 5 17 17 N 1.46899 * 109.47254 * 293.54572 * 16 14 13 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46800 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00338 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99855 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00193 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00238 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99909 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00181 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47032 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47011 * 119.99494 * 26 24 22 29 29 H 1.48500 * 109.46924 * 239.99470 * 26 24 22 30 30 H 1.09003 * 109.46772 * 296.09590 * 1 2 3 31 31 H 1.09001 * 109.47037 * 56.09370 * 1 2 3 32 32 H 1.08999 * 109.47466 * 176.09471 * 1 2 3 33 33 H 1.09003 * 110.37026 * 86.07782 * 4 2 1 34 34 H 1.08997 * 110.46466 * 323.79981 * 4 2 1 35 35 H 1.08995 * 109.47285 * 299.99941 * 8 6 5 36 36 H 1.09000 * 109.46751 * 59.99913 * 8 6 5 37 37 H 1.09003 * 109.47302 * 59.99741 * 10 9 8 38 38 H 1.09002 * 109.47157 * 180.02562 * 10 9 8 39 39 H 1.08999 * 109.46986 * 299.99853 * 10 9 8 40 40 H 1.09000 * 109.46492 * 60.00464 * 11 9 8 41 41 H 1.09002 * 109.46948 * 180.02562 * 11 9 8 42 42 H 1.08998 * 109.46763 * 300.00281 * 11 9 8 43 43 H 1.08999 * 109.46990 * 59.99802 * 12 9 8 44 44 H 1.08991 * 109.46998 * 179.97438 * 12 9 8 45 45 H 1.08994 * 109.46754 * 299.99994 * 12 9 8 46 46 H 1.08993 * 109.88798 * 239.52640 * 13 5 4 47 47 H 1.09002 * 110.01431 * 118.42977 * 13 5 4 48 48 H 1.09002 * 109.47153 * 173.54568 * 16 14 13 49 49 H 1.09001 * 109.46832 * 53.54759 * 16 14 13 50 50 H 1.00908 * 110.99847 * 56.04959 * 17 16 14 51 51 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 52 52 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 53 53 H 0.97000 * 119.99567 * 0.02562 * 21 19 18 54 54 H 0.96998 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8066 -1.2004 5 7 3.4270 -1.2431 -0.7735 6 6 4.4475 -1.5616 -1.5942 7 8 5.5126 -1.9101 -1.1305 8 6 4.2652 -1.4844 -3.0882 9 6 5.5656 -1.8940 -3.7825 10 6 5.9259 -3.3272 -3.3860 11 6 5.3804 -1.8163 -5.2993 12 6 6.6909 -0.9489 -3.3565 13 6 3.4674 -1.2743 0.6958 14 6 2.0861 -0.8080 1.2021 15 1 1.4478 -1.6633 1.4237 16 6 2.2350 0.0874 2.4338 17 7 2.7630 -0.7036 3.5533 18 6 2.9200 0.1254 4.7559 19 6 3.4630 -0.7183 5.8802 20 8 3.6966 -1.8944 5.6977 21 7 3.6890 -0.1660 7.0887 22 6 4.1834 -0.9334 8.1115 23 1 4.3914 -1.9806 7.9490 24 6 4.4159 -0.3641 9.3575 25 7 4.1623 0.9101 9.5554 26 14 5.0889 -1.4099 10.7514 27 1 5.2874 -2.8021 10.2743 28 1 6.3879 -0.8520 11.2061 29 1 4.1260 -1.4070 11.8818 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1559 -0.1719 -2.0838 34 1 1.4524 -1.6703 -1.4044 35 1 3.4634 -2.1574 -3.3917 36 1 4.0090 -0.4633 -3.3706 37 1 5.1242 -4.0006 -3.6895 38 1 6.8526 -3.6189 -3.8803 39 1 6.0577 -3.3830 -2.3055 40 1 5.1235 -0.7954 -5.5820 41 1 6.3067 -2.1085 -5.7939 42 1 4.5789 -2.4899 -5.6024 43 1 6.8227 -1.0047 -2.2760 44 1 7.6173 -1.2410 -3.8508 45 1 6.4342 0.0721 -3.6390 46 1 4.2425 -0.6000 1.0598 47 1 3.6661 -2.2885 1.0421 48 1 1.2619 0.4968 2.7052 49 1 2.9224 0.9029 2.2091 50 1 3.6345 -1.1468 3.3037 51 1 3.6123 0.9410 4.5470 52 1 1.9518 0.5353 5.0434 53 1 3.5018 0.7745 7.2347 54 1 4.3242 1.3074 10.4253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105829052.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:28 Heat of formation + Delta-G solvation = -112.244842 kcal Electronic energy + Delta-G solvation = -29852.422943 eV Core-core repulsion = 25822.312044 eV Total energy + Delta-G solvation = -4030.110898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48128 -40.22778 -39.58535 -37.29757 -36.61974 -35.83606 -33.93693 -33.28455 -31.68743 -29.77938 -28.13389 -28.12700 -28.02958 -27.18547 -26.44730 -25.01462 -22.45817 -21.40403 -20.93282 -20.68756 -19.93192 -19.49490 -18.18114 -17.87024 -17.43924 -16.79465 -16.53191 -16.42750 -16.01302 -15.72880 -15.42730 -15.30404 -15.26185 -15.05058 -14.94671 -14.56760 -14.22831 -14.11330 -13.78437 -13.59570 -13.45498 -13.23071 -13.13974 -13.00078 -12.93179 -12.86576 -12.73661 -12.64535 -12.51330 -12.42833 -12.19106 -12.13457 -12.01311 -11.79533 -11.66917 -11.57104 -11.54704 -11.53481 -11.42623 -10.47550 -10.37633 -10.03615 -9.63941 -9.37023 -8.48864 -5.97617 1.34954 1.40218 1.54660 1.64819 1.99156 2.02719 2.27631 2.87131 3.18155 3.40286 3.46332 3.57140 3.72219 3.83279 3.86930 3.93691 4.18165 4.22976 4.29771 4.37060 4.39901 4.45577 4.52982 4.53326 4.57726 4.61249 4.63905 4.68561 4.72678 4.76969 4.83999 4.84850 4.86084 4.94355 4.97253 5.07063 5.12024 5.15890 5.17021 5.22278 5.26964 5.37658 5.39222 5.41214 5.51537 5.53923 5.62659 5.86141 6.08039 6.31504 6.56860 6.58061 7.10637 7.22230 7.53782 8.09525 8.68743 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.001947 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.855963 B =14377.375720 C =15687.440644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.092 0.908 4 C 0.100 3.900 5 N -0.621 5.621 6 C 0.514 3.486 7 O -0.573 6.573 8 C -0.118 4.118 9 C -0.054 4.054 10 C -0.152 4.152 11 C -0.135 4.135 12 C -0.152 4.152 13 C 0.110 3.890 14 C -0.084 4.084 15 H 0.090 0.910 16 C 0.073 3.927 17 N -0.685 5.685 18 C 0.065 3.935 19 C 0.435 3.565 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.993 3.007 27 H -0.275 1.275 28 H -0.270 1.270 29 H -0.269 1.269 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.094 0.906 49 H 0.037 0.963 50 H 0.339 0.661 51 H 0.064 0.936 52 H 0.110 0.890 53 H 0.397 0.603 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 3.306 -31.036 32.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.110 0.890 4 C -0.021 4.021 5 N -0.355 5.355 6 C 0.306 3.694 7 O -0.453 6.453 8 C -0.157 4.157 9 C -0.054 4.054 10 C -0.209 4.209 11 C -0.192 4.192 12 C -0.209 4.209 13 C -0.013 4.013 14 C -0.103 4.103 15 H 0.109 0.891 16 C -0.056 4.056 17 N -0.317 5.317 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.194 1.194 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.112 0.888 49 H 0.055 0.945 50 H 0.157 0.843 51 H 0.082 0.918 52 H 0.128 0.872 53 H 0.231 0.769 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.574 2.209 -30.617 31.618 hybrid contribution 1.469 0.317 1.240 1.948 sum -6.105 2.527 -29.378 30.112 Atomic orbital electron populations 1.21691 0.91869 1.02810 1.03093 1.22373 0.97510 0.99042 0.91904 0.89009 1.22701 0.81523 0.99289 0.98589 1.48711 1.13718 1.66822 1.06207 1.21184 0.82046 0.75867 0.90339 1.90616 1.27435 1.48669 1.78606 1.21808 1.00222 1.05556 0.88143 1.20325 0.93663 0.95382 0.96077 1.22062 1.01057 0.95721 1.02099 1.21834 1.02290 1.02729 0.92371 1.22054 0.98045 0.98721 1.02056 1.21879 0.98345 1.00187 0.80934 1.22260 0.94496 0.99287 0.94288 0.89128 1.22051 1.00886 0.93911 0.88757 1.60143 1.35229 1.32373 1.03941 1.21546 1.02101 0.93731 0.89354 1.20945 0.83234 0.88747 0.84792 1.90495 1.58229 1.18886 1.83572 1.41930 1.57415 1.12364 1.09272 1.19697 1.41209 0.94925 0.90603 0.90498 1.26047 0.97378 0.97408 1.00443 1.69673 1.48687 1.12020 1.25622 0.84867 0.78187 0.77865 0.77380 1.19980 1.19554 1.19376 0.92025 0.90418 0.92101 0.87755 0.89793 0.86879 0.86651 0.92503 0.93034 0.93013 0.91382 0.92517 0.91482 0.92988 0.93064 0.92387 0.93540 0.93710 0.88800 0.94517 0.84334 0.91814 0.87193 0.76891 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.31 71.98 0.67 -0.43 16 2 C -0.09 -1.00 3.09 -9.40 -0.03 -1.02 16 3 H 0.09 0.98 8.05 -2.39 -0.02 0.96 16 4 C 0.10 1.06 6.16 86.86 0.53 1.59 16 5 N -0.62 -12.06 3.33 -811.78 -2.70 -14.76 16 6 C 0.51 11.36 7.26 87.66 0.64 12.00 16 7 O -0.57 -17.93 11.67 -3.03 -0.04 -17.97 16 8 C -0.12 -1.53 3.78 29.85 0.11 -1.42 16 9 C -0.05 -0.83 0.77 -52.18 -0.04 -0.87 16 10 C -0.15 -2.92 8.17 71.98 0.59 -2.33 16 11 C -0.14 -1.32 8.47 71.98 0.61 -0.71 16 12 C -0.15 -2.86 8.18 71.98 0.59 -2.27 16 13 C 0.11 2.64 5.64 86.73 0.49 3.13 16 14 C -0.08 -1.56 2.67 -9.61 -0.03 -1.59 16 15 H 0.09 1.85 8.04 -2.39 -0.02 1.83 16 16 C 0.07 1.57 5.06 86.30 0.44 2.01 16 17 N -0.68 -21.91 6.13 -517.93 -3.17 -25.08 16 18 C 0.07 2.26 6.17 85.55 0.53 2.79 16 19 C 0.44 21.35 7.82 87.65 0.69 22.04 16 20 O -0.63 -36.02 15.78 -3.06 -0.05 -36.07 16 21 N -0.57 -30.07 5.29 -306.99 -1.62 -31.70 16 22 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 26 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.50 8.08 -2.39 -0.02 0.49 16 33 H 0.10 0.55 7.48 -2.39 -0.02 0.53 16 34 H 0.08 0.72 7.99 -2.39 -0.02 0.70 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 0.95 7.85 -2.39 -0.02 0.93 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 1.37 5.51 -2.39 -0.01 1.35 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.05 1.35 5.51 -2.39 -0.01 1.34 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 1.28 7.76 -2.39 -0.02 1.26 16 47 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.04 0.76 8.06 -2.39 -0.02 0.74 16 50 H 0.34 12.06 7.65 -89.69 -0.69 11.37 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 53 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 54 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -75.89 423.17 1.26 -74.63 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -0.54 Total: 40.97 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 7.07 Total: 14.00 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -7.21 Total: -121.40 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.08 Total: -54.04 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -75.89 1.26 -74.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105829052.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.611 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds