Wall clock time and date at job start Tue Mar 31 2020 23:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47348 * 2 1 4 4 C 1.53004 * 109.46938 * 120.00134 * 2 1 3 5 5 C 1.53003 * 109.47172 * 65.15970 * 4 2 1 6 6 H 1.08997 * 109.47158 * 305.45508 * 5 4 2 7 7 C 1.53001 * 109.47294 * 185.45756 * 5 4 2 8 8 C 1.50701 * 109.46827 * 65.45894 * 5 4 2 9 9 O 1.21277 * 120.00167 * 33.35356 * 8 5 4 10 10 N 1.34773 * 119.99748 * 213.34892 * 8 5 4 11 11 C 1.47430 * 125.65066 * 4.65392 * 10 8 5 12 12 C 1.54904 * 104.83231 * 204.16369 * 11 10 8 13 13 C 1.55152 * 101.58433 * 322.98830 * 12 11 10 14 14 H 1.08999 * 110.72520 * 276.96506 * 13 12 11 15 15 N 1.46901 * 110.72332 * 153.86687 * 13 12 11 16 16 C 1.46892 * 111.00291 * 80.20341 * 15 13 12 17 17 C 1.50700 * 109.47745 * 179.97438 * 16 15 13 18 18 O 1.21297 * 119.99590 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00251 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99829 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00043 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00096 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99650 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00145 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47287 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47323 * 300.00381 * 24 22 20 27 27 H 1.48501 * 109.47055 * 60.00059 * 24 22 20 28 28 C 1.47319 * 125.61771 * 184.51374 * 10 8 5 29 29 H 1.09000 * 110.06393 * 298.25381 * 28 10 8 30 30 C 1.53002 * 109.84908 * 59.50911 * 28 10 8 31 31 H 1.09003 * 109.47503 * 178.49944 * 1 2 3 32 32 H 1.09007 * 109.47093 * 298.50263 * 1 2 3 33 33 H 1.08997 * 109.46866 * 58.49765 * 1 2 3 34 34 H 1.08997 * 109.46697 * 239.99279 * 2 1 3 35 35 H 1.09000 * 109.47268 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47290 * 299.99533 * 3 2 1 37 37 H 1.09002 * 109.47413 * 60.00207 * 3 2 1 38 38 H 1.08997 * 109.46930 * 305.16569 * 4 2 1 39 39 H 1.08990 * 109.47397 * 185.16293 * 4 2 1 40 40 H 1.08998 * 109.46849 * 299.18642 * 7 5 4 41 41 H 1.09000 * 109.46916 * 59.17551 * 7 5 4 42 42 H 1.08993 * 109.47254 * 179.18040 * 7 5 4 43 43 H 1.09000 * 110.36523 * 85.32140 * 11 10 8 44 44 H 1.08995 * 110.45930 * 323.04853 * 11 10 8 45 45 H 1.09007 * 111.00641 * 204.91948 * 12 11 10 46 46 H 1.09005 * 111.04076 * 81.07885 * 12 11 10 47 47 H 1.00903 * 111.00246 * 204.16019 * 15 13 12 48 48 H 1.09006 * 109.47126 * 60.00159 * 16 15 13 49 49 H 1.09003 * 109.47632 * 300.00427 * 16 15 13 50 50 H 0.96994 * 120.00226 * 0.02562 * 19 17 16 51 51 H 0.96995 * 119.99458 * 179.97438 * 23 22 20 52 52 H 1.09001 * 109.46830 * 181.59124 * 30 28 10 53 53 H 1.09000 * 109.47262 * 301.58587 * 30 28 10 54 54 H 1.08998 * 109.47066 * 61.58767 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6386 -2.1964 1.1861 6 1 0.5611 -2.2739 1.0412 7 6 2.0283 -2.8875 2.4943 8 6 2.3494 -2.8614 0.0356 9 8 3.4653 -2.5034 -0.2763 10 7 1.7448 -3.8542 -0.6467 11 6 0.3619 -4.3212 -0.4392 12 6 0.3541 -5.7806 -0.9584 13 6 1.3027 -5.6810 -2.1822 14 1 0.7648 -5.3199 -3.0588 15 7 1.9319 -6.9792 -2.4592 16 6 1.0181 -7.8601 -3.1986 17 6 1.6970 -9.1790 -3.4645 18 8 2.8305 -9.3669 -3.0757 19 7 1.0443 -10.1501 -4.1333 20 6 1.6618 -11.3501 -4.3746 21 1 2.6711 -11.5174 -4.0284 22 6 0.9887 -12.3516 -5.0637 23 7 -0.2395 -12.1482 -5.4845 24 14 1.8302 -13.9864 -5.3932 25 1 0.9063 -14.8771 -6.1402 26 1 3.0566 -13.7584 -6.1990 27 1 2.1972 -14.6232 -4.1028 28 6 2.3562 -4.6500 -1.7252 29 1 2.6280 -4.0031 -2.5592 30 6 3.5972 -5.3731 -1.1978 31 1 -0.3634 -1.0273 -0.0269 32 1 -0.3633 0.4904 0.9032 33 1 -0.3633 0.5370 -0.8762 34 1 1.8932 -0.5139 -0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6768 1.9562 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.6030 -0.2637 2.1368 39 1 3.1259 -0.6420 1.2968 40 1 3.1076 -2.8226 2.6320 41 1 1.5256 -2.3971 3.3279 42 1 1.7293 -3.9349 2.4550 43 1 -0.3348 -3.7105 -1.0134 44 1 0.1054 -4.2939 0.6198 45 1 -0.6480 -6.0811 -1.2644 46 1 0.7532 -6.4646 -0.2094 47 1 2.8016 -6.8607 -2.9568 48 1 0.7500 -7.3925 -4.1461 49 1 0.1172 -8.0272 -2.6082 50 1 0.1378 -10.0000 -4.4439 51 1 -0.7092 -12.8472 -5.9659 52 1 4.0604 -5.9372 -2.0073 53 1 4.3073 -4.6417 -0.8119 54 1 3.3079 -6.0554 -0.3985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179792955.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:48 Heat of formation + Delta-G solvation = -109.648631 kcal Electronic energy + Delta-G solvation = -30466.216843 eV Core-core repulsion = 26436.218525 eV Total energy + Delta-G solvation = -4029.998318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58159 -40.20232 -39.26646 -37.37842 -36.18929 -35.55607 -33.98215 -33.25553 -32.20006 -31.46367 -28.24772 -28.03893 -27.54190 -26.54240 -25.65708 -24.77686 -23.13760 -21.30023 -21.04768 -20.62344 -19.91010 -19.61108 -18.43493 -17.79264 -17.21507 -16.90296 -16.48632 -16.39192 -16.16336 -15.89274 -15.69911 -15.38450 -15.16304 -14.74014 -14.48697 -14.36320 -14.23064 -14.00719 -13.71438 -13.50262 -13.48717 -13.39404 -13.19661 -13.05245 -13.01192 -12.89606 -12.73878 -12.69068 -12.57998 -12.47700 -12.42420 -12.23074 -12.12493 -11.85327 -11.63166 -11.54890 -11.49483 -11.40483 -11.34909 -10.64819 -10.32861 -10.00472 -9.67450 -9.35719 -8.46016 -5.94315 1.39892 1.42014 1.52501 1.65598 1.92400 2.07098 2.29840 2.91926 3.21499 3.31528 3.51384 3.62511 3.67088 3.81099 3.93955 4.04820 4.08392 4.25426 4.29792 4.31390 4.34784 4.35999 4.43058 4.47171 4.52809 4.61288 4.64449 4.69060 4.72834 4.75253 4.80350 4.84236 4.89504 4.95432 5.01619 5.03764 5.05120 5.07260 5.15969 5.25178 5.27256 5.31682 5.34521 5.41609 5.42275 5.47236 5.53468 5.89298 6.10741 6.31975 6.57179 6.61494 7.13788 7.20230 7.57839 8.13567 8.71006 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.001894 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.888752 B =14780.395940 C =15012.696112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.096 4.096 5 C -0.103 4.103 6 H 0.116 0.884 7 C -0.139 4.139 8 C 0.530 3.470 9 O -0.583 6.583 10 N -0.613 5.613 11 C 0.099 3.901 12 C -0.120 4.120 13 C 0.080 3.920 14 H 0.073 0.927 15 N -0.667 5.667 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.273 1.273 28 C 0.139 3.861 29 H 0.064 0.936 30 C -0.139 4.139 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.344 0.656 48 H 0.068 0.932 49 H 0.110 0.890 50 H 0.397 0.603 51 H 0.278 0.722 52 H 0.061 0.939 53 H 0.043 0.957 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 24.653 13.074 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.134 4.134 5 C -0.124 4.124 6 H 0.134 0.866 7 C -0.196 4.196 8 C 0.321 3.679 9 O -0.463 6.463 10 N -0.347 5.347 11 C -0.023 4.023 12 C -0.158 4.158 13 C -0.030 4.030 14 H 0.091 0.909 15 N -0.301 5.301 16 C -0.065 4.065 17 C 0.225 3.775 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.198 1.198 28 C 0.035 3.965 29 H 0.083 0.917 30 C -0.198 4.198 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.091 0.909 47 H 0.165 0.835 48 H 0.086 0.914 49 H 0.128 0.872 50 H 0.231 0.769 51 H 0.087 0.913 52 H 0.080 0.920 53 H 0.062 0.938 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.750 24.388 13.701 28.558 hybrid contribution 0.486 -0.711 -1.642 1.855 sum -5.264 23.677 12.059 27.087 Atomic orbital electron populations 1.21882 0.93628 1.02200 1.02480 1.21120 0.96989 0.96428 0.97401 1.21786 1.00376 0.95575 1.02344 1.21560 1.00939 0.92006 0.98870 1.21464 1.01938 0.96162 0.92843 0.86636 1.21722 1.01701 1.00779 0.95440 1.20995 0.85700 0.78075 0.83174 1.90660 1.21876 1.64601 1.69157 1.48751 1.15362 1.34351 1.36232 1.22600 0.81901 0.94516 1.03317 1.22874 1.00328 0.95976 0.96628 1.22604 0.94322 0.87423 0.98662 0.90889 1.60302 1.06333 1.11788 1.51720 1.21556 0.96339 0.90224 0.98411 1.20914 0.87326 0.87312 0.81979 1.90504 1.21192 1.82777 1.56629 1.41905 1.16359 1.12692 1.50017 1.19610 1.00037 0.91574 1.35162 0.90477 1.26002 0.96358 1.02687 0.96139 1.69657 1.11598 1.36200 1.38488 0.85020 0.77914 0.77124 0.78468 1.19430 1.19869 1.19814 1.21487 0.93578 0.91601 0.89832 0.91748 1.21779 0.97070 0.99254 1.01666 0.92111 0.91141 0.92835 0.94218 0.93919 0.92624 0.91253 0.88702 0.93060 0.93728 0.88721 0.92016 0.88932 0.88127 0.87756 0.90917 0.83499 0.91429 0.87192 0.76888 0.91303 0.92043 0.93771 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.92 71.98 0.64 -0.84 16 2 C -0.10 -1.52 2.81 -10.80 -0.03 -1.55 16 3 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 4 C -0.10 -1.41 3.90 30.60 0.12 -1.29 16 5 C -0.10 -1.51 2.09 -11.54 -0.02 -1.53 16 6 H 0.12 1.11 5.06 -2.39 -0.01 1.10 16 7 C -0.14 -1.81 9.18 71.98 0.66 -1.15 16 8 C 0.53 12.16 5.60 87.66 0.49 12.65 16 9 O -0.58 -18.56 14.94 -3.02 -0.05 -18.61 16 10 N -0.61 -12.56 3.09 -787.35 -2.43 -14.99 16 11 C 0.10 1.28 6.33 86.85 0.55 1.83 16 12 C -0.12 -2.00 6.40 31.98 0.20 -1.80 16 13 C 0.08 1.73 3.08 46.10 0.14 1.87 16 14 H 0.07 1.37 8.00 -2.39 -0.02 1.35 16 15 N -0.67 -19.82 5.07 -489.46 -2.48 -22.30 16 16 C 0.07 2.13 6.02 85.56 0.51 2.64 16 17 C 0.44 20.27 7.82 87.66 0.69 20.96 16 18 O -0.62 -34.31 15.78 -3.08 -0.05 -34.36 16 19 N -0.57 -28.79 5.29 -306.98 -1.62 -30.41 16 20 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 23 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 24 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 C 0.14 3.35 3.41 45.29 0.15 3.50 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 C -0.14 -4.01 8.33 71.98 0.60 -3.41 16 31 H 0.06 0.54 6.53 -2.39 -0.02 0.52 16 32 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.04 0.84 7.08 -2.39 -0.02 0.82 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.05 1.02 7.66 -2.39 -0.02 1.00 16 40 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.90 7.29 -2.39 -0.02 0.88 16 45 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.34 11.28 6.59 -89.69 -0.59 10.69 16 48 H 0.07 1.87 8.11 -2.38 -0.02 1.85 16 49 H 0.11 3.03 7.89 -2.39 -0.02 3.01 16 50 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 51 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 52 H 0.06 1.83 6.59 -2.39 -0.02 1.82 16 53 H 0.04 1.39 6.80 -2.39 -0.02 1.38 16 54 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.82 421.30 1.90 -70.92 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.44 Total: 41.20 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.65 Total: 12.36 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -6.25 Total: -116.32 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.09 Total: -52.97 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -72.82 1.90 -70.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179792955.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.724 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds